Inspired by the success of unsupervised pre-training paradigms, researchers have applied these approaches to DNA pre-training. However, we argue that these approaches alone yield suboptimal results because pure DNA sequences lack sufficient information, since their functions are regulated by genomic profiles like chromatin accessibility. Here, we demonstrate that supervised training for genomic profile prediction serves as a more effective alternative to pure sequence pre-training. Furthermore, considering the multi-species and multi-profile nature of genomic profile prediction, we introduce our $\textbf{S}$pecies-$\textbf{P}$rofile $\textbf{A}$daptive $\textbf{C}$ollaborative $\textbf{E}$xperts (SPACE) that leverages Mixture of Experts (MoE) to better capture the relationships between DNA sequences across different species and genomic profiles, thereby learning more effective DNA representations. Through extensive experiments across various tasks, our model achieves state-of-the-art performance, establishing that DNA models trained with supervised genomic profiles serve as powerful DNA representation learners. The code is available at https://github.com/ZhuJiwei111/SPACE.
In this work, we introduce the Qwen3 Embedding series, a significant advancement over its predecessor, the GTE-Qwen series, in text embedding and reranking capabilities, built upon the Qwen3 foundation models. Leveraging the Qwen3 LLMs' robust capabilities in multilingual text understanding and generation, our innovative multi-stage training pipeline combines large-scale unsupervised pre-training with supervised fine-tuning on high-quality datasets. Effective model merging strategies further ensure the robustness and adaptability of the Qwen3 Embedding series. During the training process, the Qwen3 LLMs serve not only as backbone models but also play a crucial role in synthesizing high-quality, rich, and diverse training data across multiple domains and languages, thus enhancing the training pipeline. The Qwen3 Embedding series offers a spectrum of model sizes (0.6B, 4B, 8B) for both embedding and reranking tasks, addressing diverse deployment scenarios where users can optimize for either efficiency or effectiveness. Empirical evaluations demonstrate that the Qwen3 Embedding series achieves state-of-the-art results across diverse benchmarks. Notably, it excels on the multilingual evaluation benchmark MTEB for text embedding, as well as in various retrieval tasks, including code retrieval, cross-lingual retrieval and multilingual retrieval. To facilitate reproducibility and promote community-driven research and development, the Qwen3 Embedding models are publicly available under the Apache 2.0 license.
Wireless Technology Recognition (WTR) is essential in modern communication systems, enabling efficient spectrum management and the seamless coexistence of diverse technologies. In real-world conditions, WTR solutions should be able to handle signals from various resources with different sampling rates, capturing devices, and frequency bands. However, traditional WTR methods, which rely on energy detection, Convolutional Neural Network (CNN) models, or Deep Learning (DL), lack the robustness and adaptability required to generalize across unseen environments, different sampling devices, and previously unencountered signal classes. In this work, we introduce a Transformer-based foundation model for WTR, trained in an unsupervised manner on large-scale, unlabeled wireless signal datasets. Foundation models are designed to learn general-purpose representations that transfer effectively across tasks and domains, allowing generalization towards new technologies and WTR sampling devices. Our approach leverages input patching for computational efficiency and incorporates a two-stage training pipeline: unsupervised pre-training followed by lightweight fine-tuning. This enables the model to generalize to new wireless technologies and environments using only a small number of labeled samples. Experimental results demonstrate that our model achieves superior accuracy across varying sampling rates and frequency bands while maintaining low computational complexity, supporting the vision of a reusable wireless foundation model adaptable to new technologies with minimal retraining.
In music source separation (MSS), obtaining isolated sources or stems is highly costly, making pre-training on unlabeled data a promising approach. Although source-agnostic unsupervised learning like mixture-invariant training (MixIT) has been explored in general sound separation, they have been largely overlooked in MSS due to its implicit assumption of source independence. We hypothesize, however, that the difficulty of applying MixIT to MSS arises from the ill-posed nature of MSS itself, where stem definitions are application-dependent and models lack explicit knowledge of what should or should not be separated, rather than from high inter-source correlation. While MixIT does not assume any source model and struggles with such ambiguities, our preliminary experiments show that it can still separate instruments to some extent, suggesting its potential for unsupervised pre-training. Motivated by these insights, this study investigates MixIT-based pre-training for MSS. We first pre-train a model on in-the-wild, unlabeled data from the Free Music Archive using MixIT, and then fine-tune it on MUSDB18 with supervision. Using the band-split TF-Locoformer, one of the state-of-the-art MSS models, we demonstrate that MixIT-based pre-training improves the performance over training from scratch.
We extend and study a semi-supervised model for text classification proposed earlier by Hatefi et al. for classification tasks in which document classes are described by a small number of gold-labeled examples, while the majority of training examples is unlabeled. The model leverages the teacher-student architecture of Meta Pseudo Labels in which a ''teacher'' generates labels for originally unlabeled training data to train the ''student'' and updates its own model iteratively based on the performance of the student on the gold-labeled portion of the data. We extend the original model of Hatefi et al. by an unsupervised pre-training phase based on objective masking, and conduct in-depth performance evaluations of the original model, our extension, and various independent baselines. Experiments are performed using three different datasets in two different languages (English and Swedish).
Few-shot tabular learning, in which machine learning models are trained with a limited amount of labeled data, provides a cost-effective approach to addressing real-world challenges. The advent of Large Language Models (LLMs) has sparked interest in leveraging their pre-trained knowledge for few-shot tabular learning. Despite promising results, existing approaches either rely on test-time knowledge extraction, which introduces undesirable latency, or text-level knowledge, which leads to unreliable feature engineering. To overcome these limitations, we propose Latte, a training-time knowledge extraction framework that transfers the latent prior knowledge within LLMs to optimize a more generalized downstream model. Latte enables general knowledge-guided downstream tabular learning, facilitating the weighted fusion of information across different feature values while reducing the risk of overfitting to limited labeled data. Furthermore, Latte is compatible with existing unsupervised pre-training paradigms and effectively utilizes available unlabeled samples to overcome the performance limitations imposed by an extremely small labeled dataset. Extensive experiments on various few-shot tabular learning benchmarks demonstrate the superior performance of Latte, establishing it as a state-of-the-art approach in this domain
Camouflaged object segmentation presents unique challenges compared to traditional segmentation tasks, primarily due to the high similarity in patterns and colors between camouflaged objects and their backgrounds. Effective solutions to this problem have significant implications in critical areas such as pest control, defect detection, and lesion segmentation in medical imaging. Prior research has predominantly emphasized supervised or unsupervised pre-training methods, leaving zero-shot approaches significantly underdeveloped. Existing zero-shot techniques commonly utilize the Segment Anything Model (SAM) in automatic mode or rely on vision-language models to generate cues for segmentation; however, their performances remain unsatisfactory, likely due to the similarity of the camouflaged object and the background. Optical flow, commonly utilized for detecting moving objects, has demonstrated effectiveness even with camouflaged entities. Our method integrates optical flow, a vision-language model, and SAM 2 into a sequential pipeline. Evaluated on the MoCA-Mask dataset, our approach achieves outstanding performance improvements, significantly outperforming existing zero-shot methods by raising the F-measure ($F_\beta^w$) from 0.296 to 0.628. Remarkably, our approach also surpasses supervised methods, increasing the F-measure from 0.476 to 0.628. Additionally, evaluation on the MoCA-Filter dataset demonstrates an increase in the success rate from 0.628 to 0.697 when compared with FlowSAM, a supervised transfer method. A thorough ablation study further validates the individual contributions of each component. More details can be found on https://github.com/weathon/vcos.
The pre-training paradigm plays a key role in the success of Large Language Models (LLMs), which have been recognized as one of the most significant advancements of AI recently. Building on these breakthroughs, code LLMs with advanced coding capabilities bring huge impacts on software engineering, showing the tendency to become an essential part of developers' daily routines. However, the current code LLMs still face serious challenges related to trustworthiness, as they can generate incorrect, insecure, or unreliable code. Recent exploratory studies find that it can be promising to detect such risky outputs by analyzing LLMs' internal states, akin to how the human brain unconsciously recognizes its own mistakes. Yet, most of these approaches are limited to narrow sub-domains of LLM operations and fall short of achieving industry-level scalability and practicability. To address these challenges, in this paper, we propose PtTrust, a two-stage risk assessment framework for code LLM based on internal state pre-training, designed to integrate seamlessly with the existing infrastructure of software companies. The core idea is that the risk assessment framework could also undergo a pre-training process similar to LLMs. Specifically, PtTrust first performs unsupervised pre-training on large-scale unlabeled source code to learn general representations of LLM states. Then, it uses a small, labeled dataset to train a risk predictor. We demonstrate the effectiveness of PtTrust through fine-grained, code line-level risk assessment and demonstrate that it generalizes across tasks and different programming languages. Further experiments also reveal that PtTrust provides highly intuitive and interpretable features, fostering greater user trust. We believe PtTrust makes a promising step toward scalable and trustworthy assurance for code LLMs.
Reinforcement fine-tuning has instrumental enhanced the instruction-following and reasoning abilities of large language models. In this work, we explore the applications of reinforcement fine-tuning to the autoregressive transformer-based materials generative model CrystalFormer (arXiv:2403.15734) using discriminative machine learning models such as interatomic potentials and property prediction models. By optimizing reward signals-such as energy above the convex hull and material property figures of merit-reinforcement fine-tuning infuses knowledge from discriminative models into generative models. The resulting model, CrystalFormer-RL, shows enhanced stability in generated crystals and successfully discovers crystals with desirable yet conflicting material properties, such as substantial dielectric constant and band gap simultaneously. Notably, we observe that reinforcement fine-tuning enables not only the property-guided novel material design ability of generative pre-trained model but also unlocks property-driven material retrieval from the unsupervised pre-training dataset. Leveraging rewards from discriminative models to fine-tune materials generative models opens an exciting gateway to the synergies of the machine learning ecosystem for materials.
Camouflaged object segmentation presents unique challenges compared to traditional segmentation tasks, primarily due to the high similarity in patterns and colors between camouflaged objects and their backgrounds. Effective solutions to this problem have significant implications in critical areas such as pest control, defect detection, and lesion segmentation in medical imaging. Prior research has predominantly emphasized supervised or unsupervised pre-training methods, leaving zero-shot approaches significantly underdeveloped. Existing zero-shot techniques commonly utilize the Segment Anything Model (SAM) in automatic mode or rely on vision-language models to generate cues for segmentation; however, their performances remain unsatisfactory. Optical flow, commonly utilized for detecting moving objects, has demonstrated effectiveness even with camouflaged entities. Our method integrates optical flow, a vision-language model, and SAM 2 into a sequential pipeline, where the output of one component provides cues for the next. Evaluated on the MoCA-Masks dataset, our approach achieves outstanding performance improvements, significantly outperforming existing zero-shot methods by raising the mean Intersection-over-Union (mIoU) from 0.273 to 0.561. Remarkably, this simple yet effective approach also surpasses supervised methods, increasing mIoU from 0.422 to 0.561. Additionally, evaluation on the MoCA-Filter dataset demonstrates an increase in the success rate from 0.628 to 0.697 when compared with FlowSAM, a supervised transfer method. A thorough ablation study further validates the individual contributions of each component.
Large language models (LLMs) undergo a three-phase training process: unsupervised pre-training, supervised fine-tuning (SFT), and learning from human feedback (RLHF/DPO). Notably, it is during the final phase that these models are exposed to negative examples -- incorrect, rejected, or suboptimal responses to queries. This paper delves into the role of negative examples in the training of LLMs, using a likelihood-ratio (Likra) model on multiple-choice question answering benchmarks to precisely manage the influence and the volume of negative examples. Our findings reveal three key insights: (1) During a critical phase in training, Likra with negative examples demonstrates a significantly larger improvement per training example compared to SFT using only positive examples. This leads to a sharp jump in the learning curve for Likra unlike the smooth and gradual improvement of SFT; (2) negative examples that are plausible but incorrect (near-misses) exert a greater influence; and (3) while training with positive examples fails to significantly decrease the likelihood of plausible but incorrect answers, training with negative examples more accurately identifies them. These results indicate a potentially significant role for negative examples in improving accuracy and reducing hallucinations for LLMs.
Generative Flow Networks (GFlowNets) have recently emerged as a suitable framework for generating diverse and high-quality molecular structures by learning from rewards treated as unnormalized distributions. Previous works in this framework often restrict exploration by using predefined molecular fragments as building blocks, limiting the chemical space that can be accessed. In this work, we introduce Atomic GFlowNets (A-GFNs), a foundational generative model leveraging individual atoms as building blocks to explore drug-like chemical space more comprehensively. We propose an unsupervised pre-training approach using drug-like molecule datasets, which teaches A-GFNs about inexpensive yet informative molecular descriptors such as drug-likeliness, topological polar surface area, and synthetic accessibility scores. These properties serve as proxy rewards, guiding A-GFNs towards regions of chemical space that exhibit desirable pharmacological properties. We further implement a goal-conditioned finetuning process, which adapts A-GFNs to optimize for specific target properties. In this work, we pretrain A-GFN on a subset of ZINC dataset, and by employing robust evaluation metrics we show the effectiveness of our approach when compared to other relevant baseline methods for a wide range of drug design tasks.
Unsupervised pre-training and transfer learning are commonly used techniques to initialize training algorithms for neural networks, particularly in settings with limited labeled data. In this paper, we study the effects of unsupervised pre-training and transfer learning on the sample complexity of high-dimensional supervised learning. Specifically, we consider the problem of training a single-layer neural network via online stochastic gradient descent. We establish that pre-training and transfer learning (under concept shift) reduce sample complexity by polynomial factors (in the dimension) under very general assumptions. We also uncover some surprising settings where pre-training grants exponential improvement over random initialization in terms of sample complexity.
The advancements in the Large Language Model (LLM) have helped in solving several problems related to language processing. Most of the researches have focused on the English language only, because of its popularity and abundance on the internet. However, a high-performance language model for Hindi and other Indic languages is lacking in the literature. In this work, we have pre-trained two autoregressive LLM models for the Hindi language, namely HindiLLM-Small and HindiLLM-Medium. We use a two-step process comprising unsupervised pre-training and supervised fine-tuning. First, we create a large and high-quality text corpus for unsupervised pre-training. Next, we train a Byte-Pair Encoding, named HindiLLM tokenizer, using the pre-training text data. We then perform training on the unlabeled data, known as the pre-training step, to get the HindiLLM base models. Furthermore, we perform fine-tuning of the HindiLLM base models for different tasks like sentiment analysis, text classification, natural language inference, and multiple choice question-answer on popular labeled datasets to measure the real-world performance. The evaluation shows that the HindiLLM-based fine-tuned models outperform several models in most of the language related tasks.
This work asks: with abundant, unlabeled real faces, how to learn a robust and transferable facial representation that boosts various face security tasks with respect to generalization performance? We make the first attempt and propose a self-supervised pretraining framework to learn fundamental representations of real face images, FSFM, that leverages the synergy between masked image modeling (MIM) and instance discrimination (ID). We explore various facial masking strategies for MIM and present a simple yet powerful CRFR-P masking, which explicitly forces the model to capture meaningful intra-region consistency and challenging inter-region coherency. Furthermore, we devise the ID network that naturally couples with MIM to establish underlying local-to-global correspondence via tailored self-distillation. These three learning objectives, namely 3C, empower encoding both local features and global semantics of real faces. After pretraining, a vanilla ViT serves as a universal vision foundation model for downstream face security tasks: cross-dataset deepfake detection, cross-domain face anti-spoofing, and unseen diffusion facial forgery detection. Extensive experiments on 10 public datasets demonstrate that our model transfers better than supervised pretraining, visual and facial self-supervised learning arts, and even outperforms task-specialized SOTA methods.
Network data packet anomaly detection faces numerous challenges, including exploring new anomaly supervision signals, researching weakly supervised anomaly detection, and improving model interpretability. This paper proposes NIDS-GPT, a GPT-based causal language model for network intrusion detection. Unlike previous work, NIDS-GPT innovatively treats each number in the packet as an independent "word" rather than packet fields, enabling a more fine-grained data representation. We adopt an improved GPT-2 model and design special tokenizers and embedding layers to better capture the structure and semantics of network data. NIDS-GPT has good scalability, supports unsupervised pre-training, and enhances model interpretability through attention weight visualization. Experiments on the CICIDS2017 and car-hacking datasets show that NIDS-GPT achieves 100\% accuracy under extreme imbalance conditions, far surpassing traditional methods; it also achieves over 90\% accuracy in one-shot learning. These results demonstrate NIDS-GPT's excellent performance and potential in handling complex network anomaly detection tasks, especially in data-imbalanced and resource-constrained scenarios. The code is available at \url{https://github.com/woshixiaobai2019/nids-gpt.gi
Structural health monitoring (SHM) has experienced significant advancements in recent decades, accumulating massive monitoring data. Data anomalies inevitably exist in monitoring data, posing significant challenges to their effective utilization. Recently, deep learning has emerged as an efficient and effective approach for anomaly detection in bridge SHM. Despite its progress, many deep learning models require large amounts of labeled data for training. The process of labeling data, however, is labor-intensive, time-consuming, and often impractical for large-scale SHM datasets. To address these challenges, this work explores the use of self-supervised learning (SSL), an emerging paradigm that combines unsupervised pre-training and supervised fine-tuning. The SSL-based framework aims to learn from only a very small quantity of labeled data by fine-tuning, while making the best use of the vast amount of unlabeled SHM data by pre-training. Mainstream SSL methods are compared and validated on the SHM data of two in-service bridges. Comparative analysis demonstrates that SSL techniques boost data anomaly detection performance, achieving increased F1 scores compared to conventional supervised training, especially given a very limited amount of labeled data. This work manifests the effectiveness and superiority of SSL techniques on large-scale SHM data, providing an efficient tool for preliminary anomaly detection with scarce label information.
Unsupervised 3D representation learning via masked-and-reconstruction with differentiable rendering is promising to reduce the labeling burden for fusion 3D perception. However, previous literature conduct pre-training for different modalities separately because of the hight GPU memory consumption. Consequently, the interaction between the two modalities (images and point clouds) is neglected during pre-training. In this paper, we explore joint unsupervised pre-training for fusion 3D perception via differentiable rendering and propose CLAP, short for Curvature sampLing and swApping Prototype assignment prediction. The contributions are three-fold. 1) To overcome the GPU memory consumption problem, we propose Curvature Sampling to sample the more informative points/pixels for pre-training. 2) We propose to use learnable prototypes to represent parts of the scenes in a common feature space and bring the idea of swapping prototype assignment prediction to learn the interaction between the two modalities. 3) To further optimize learnable prototypes, we propose an Expectation-Maximization training scheme to maximize the similarity between embeddings and prototypes, followed by a Gram Matrix Regularization Loss to avoid collapse. Experiment results on NuScenes show that CLAP achieves 300% more performance gain as compared to previous SOTA 3D pre-training method via differentiable rendering. Codes and models will be released.
Pre-training on large-scale unlabeled datasets contribute to the model achieving powerful performance on 3D vision tasks, especially when annotations are limited. However, existing rendering-based self-supervised frameworks are computationally demanding and memory-intensive during pre-training due to the inherent nature of volume rendering. In this paper, we propose an efficient framework named GS$^3$ to learn point cloud representation, which seamlessly integrates fast 3D Gaussian Splatting into the rendering-based framework. The core idea behind our framework is to pre-train the point cloud encoder by comparing rendered RGB images with real RGB images, as only Gaussian points enriched with learned rich geometric and appearance information can produce high-quality renderings. Specifically, we back-project the input RGB-D images into 3D space and use a point cloud encoder to extract point-wise features. Then, we predict 3D Gaussian points of the scene from the learned point cloud features and uses a tile-based rasterizer for image rendering. Finally, the pre-trained point cloud encoder can be fine-tuned to adapt to various downstream 3D tasks, including high-level perception tasks such as 3D segmentation and detection, as well as low-level tasks such as 3D scene reconstruction. Extensive experiments on downstream tasks demonstrate the strong transferability of the pre-trained point cloud encoder and the effectiveness of our self-supervised learning framework. In addition, our GS$^3$ framework is highly efficient, achieving approximately 9$\times$ pre-training speedup and less than 0.25$\times$ memory cost compared to the previous rendering-based framework Ponder.
Gaussian splatting and single/multi-view depth estimation are typically studied in isolation. In this paper, we present DepthSplat to connect Gaussian splatting and depth estimation and study their interactions. More specifically, we first contribute a robust multi-view depth model by leveraging pre-trained monocular depth features, leading to high-quality feed-forward 3D Gaussian splatting reconstructions. We also show that Gaussian splatting can serve as an unsupervised pre-training objective for learning powerful depth models from large-scale unlabeled datasets. We validate the synergy between Gaussian splatting and depth estimation through extensive ablation and cross-task transfer experiments. Our DepthSplat achieves state-of-the-art performance on ScanNet, RealEstate10K and DL3DV datasets in terms of both depth estimation and novel view synthesis, demonstrating the mutual benefits of connecting both tasks.