Since the completion of the human genome sequencing project in 2001, significant progress has been made in areas such as gene regulation editing and protein structure prediction. However, given the vast amount of genomic data, the segments that can be fully annotated and understood remain relatively limited. If we consider the genome as a book, constructing its equivalents of words, sentences, and paragraphs has been a long-standing and popular research direction. Recently, studies on transfer learning in large language models have provided a novel approach to this challenge.Multilingual transfer ability, which assesses how well models fine-tuned on a source language can be applied to other languages, has been extensively studied in multilingual pre-trained models. Similarly, the transfer of natural language capabilities to "DNA language" has also been validated. Building upon these findings, we first trained a foundational model capable of transferring linguistic capabilities from English to DNA sequences. Using this model, we constructed a vocabulary of DNA words and mapped DNA words to their English equivalents.Subsequently, we fine-tuned this model using English datasets for paragraphing and sentence segmentation to develop models capable of segmenting DNA sequences into sentences and paragraphs. Leveraging these models, we processed the GRCh38.p14 human genome by segmenting, tokenizing, and organizing it into a "book" comprised of genomic "words," "sentences," and "paragraphs." Additionally, based on the DNA-to-English vocabulary mapping, we created an "English version" of the genomic book. This study offers a novel perspective for understanding the genome and provides exciting possibilities for developing innovative tools for DNA search, generation, and analysis.
This paper presents a graph cascade for sentence segmentation of XML documents. Our proposal offers sentences inside sentences for cases introduced by quotation marks and hyphens, and also pays particular attention to situations involving incises introduced by parentheses and lists introduced by colons. We present how the tool works and compare the results obtained with those available in 2019 on the same dataset, together with an evaluation of the system's performance on a test corpus
Segmenting text into sentences plays an early and crucial role in many NLP systems. This is commonly achieved by using rule-based or statistical methods relying on lexical features such as punctuation. Although some recent works no longer exclusively rely on punctuation, we find that no prior method achieves all of (i) robustness to missing punctuation, (ii) effective adaptability to new domains, and (iii) high efficiency. We introduce a new model - Segment any Text (SaT) - to solve this problem. To enhance robustness, we propose a new pretraining scheme that ensures less reliance on punctuation. To address adaptability, we introduce an extra stage of parameter-efficient fine-tuning, establishing state-of-the-art performance in distinct domains such as verses from lyrics and legal documents. Along the way, we introduce architectural modifications that result in a threefold gain in speed over the previous state of the art and solve spurious reliance on context far in the future. Finally, we introduce a variant of our model with fine-tuning on a diverse, multilingual mixture of sentence-segmented data, acting as a drop-in replacement and enhancement for existing segmentation tools. Overall, our contributions provide a universal approach for segmenting any text. Our method outperforms all baselines - including strong LLMs - across 8 corpora spanning diverse domains and languages, especially in practically relevant situations where text is poorly formatted. Our models and code, including documentation, are available at https://github.com/segment-any-text/wtpsplit under the MIT license.
In this article, the beta version 0.1.0 of Opera Graeca Adnotata (OGA), the largest open-access multilayer corpus for Ancient Greek (AG) is presented. OGA consists of 1,687 literary works and 34M+ tokens coming from the PerseusDL and OpenGreekAndLatin GitHub repositories, which host AG texts ranging from about 800 BCE to about 250 CE. The texts have been enriched with seven annotation layers: (i) tokenization layer; (ii) sentence segmentation layer; (iii) lemmatization layer; (iv) morphological layer; (v) dependency layer; (vi) dependency function layer; (vii) Canonical Text Services (CTS) citation layer. The creation of each layer is described by highlighting the main technical and annotation-related issues encountered. Tokenization, sentence segmentation, and CTS citation are performed by rule-based algorithms, while morphosyntactic annotation is the output of the COMBO parser trained on the data of the Ancient Greek Dependency Treebank. For the sake of scalability and reusability, the corpus is released in the standoff formats PAULA XML and its offspring LAULA XML.
This study introduces Ascle, a pioneering natural language processing (NLP) toolkit designed for medical text generation. Ascle is tailored for biomedical researchers and healthcare professionals with an easy-to-use, all-in-one solution that requires minimal programming expertise. For the first time, Ascle evaluates and provides interfaces for the latest pre-trained language models, encompassing four advanced and challenging generative functions: question-answering, text summarization, text simplification, and machine translation. In addition, Ascle integrates 12 essential NLP functions, along with query and search capabilities for clinical databases. The toolkit, its models, and associated data are publicly available via https://github.com/Yale-LILY/MedGen.
While large language models (LLMs) have made considerable advancements in understanding and generating unstructured text, their application in structured data remains underexplored. Particularly, using LLMs for complex reasoning tasks on knowledge graphs (KGs) remains largely untouched. To address this, we propose KG-GPT, a multi-purpose framework leveraging LLMs for tasks employing KGs. KG-GPT comprises three steps: Sentence Segmentation, Graph Retrieval, and Inference, each aimed at partitioning sentences, retrieving relevant graph components, and deriving logical conclusions, respectively. We evaluate KG-GPT using KG-based fact verification and KGQA benchmarks, with the model showing competitive and robust performance, even outperforming several fully-supervised models. Our work, therefore, marks a significant step in unifying structured and unstructured data processing within the realm of LLMs.
In the context of the rapid development of large language models, we have meticulously trained and introduced the GujiBERT and GujiGPT language models, which are foundational models specifically designed for intelligent information processing of ancient texts. These models have been trained on an extensive dataset that encompasses both simplified and traditional Chinese characters, allowing them to effectively handle various natural language processing tasks related to ancient books, including but not limited to automatic sentence segmentation, punctuation, word segmentation, part-of-speech tagging, entity recognition, and automatic translation. Notably, these models have exhibited exceptional performance across a range of validation tasks using publicly available datasets. Our research findings highlight the efficacy of employing self-supervised methods to further train the models using classical text corpora, thus enhancing their capability to tackle downstream tasks. Moreover, it is worth emphasizing that the choice of font, the scale of the corpus, and the initial model selection all exert significant influence over the ultimate experimental outcomes. To cater to the diverse text processing preferences of researchers in digital humanities and linguistics, we have developed three distinct categories comprising a total of nine model variations. We believe that by sharing these foundational language models specialized in the domain of ancient texts, we can facilitate the intelligent processing and scholarly exploration of ancient literary works and, consequently, contribute to the global dissemination of China's rich and esteemed traditional culture in this new era.
Many NLP pipelines split text into sentences as one of the crucial preprocessing steps. Prior sentence segmentation tools either rely on punctuation or require a considerable amount of sentence-segmented training data: both central assumptions might fail when porting sentence segmenters to diverse languages on a massive scale. In this work, we thus introduce a multilingual punctuation-agnostic sentence segmentation method, currently covering 85 languages, trained in a self-supervised fashion on unsegmented text, by making use of newline characters which implicitly perform segmentation into paragraphs. We further propose an approach that adapts our method to the segmentation in a given corpus by using only a small number (64-256) of sentence-segmented examples. The main results indicate that our method outperforms all the prior best sentence-segmentation tools by an average of 6.1% F1 points. Furthermore, we demonstrate that proper sentence segmentation has a point: the use of a (powerful) sentence segmenter makes a considerable difference for a downstream application such as machine translation (MT). By using our method to match sentence segmentation to the segmentation used during training of MT models, we achieve an average improvement of 2.3 BLEU points over the best prior segmentation tool, as well as massive gains over a trivial segmenter that splits text into equally sized blocks.
Parsing spoken dialogue presents challenges that parsing text does not, including a lack of clear sentence boundaries. We know from previous work that prosody helps in parsing single sentences (Tran et al. 2018), but we want to show the effect of prosody on parsing speech that isn't segmented into sentences. In experiments on the English Switchboard corpus, we find prosody helps our model both with parsing and with accurately identifying sentence boundaries. However, we find that the best-performing parser is not necessarily the parser that produces the best sentence segmentation performance. We suggest that the best parses instead come from modelling sentence boundaries jointly with other constituent boundaries.
The sentence is a fundamental unit in many NLP applications. Sentence segmentation is widely used as the first preprocessing task, where an input text is split into consecutive sentences considering the end of the sentence (EOS) as their boundaries. This task formulation relies on a strong assumption that the input text consists only of sentences, or what we call the sentential units (SUs). However, real-world texts often contain non-sentential units (NSUs) such as metadata, sentence fragments, nonlinguistic markers, etc. which are unreasonable or undesirable to be treated as a part of an SU. To tackle this issue, we formulate a novel task of sentence identification, where the goal is to identify SUs while excluding NSUs in a given text. To conduct sentence identification, we propose a simple yet effective method which combines the beginning of the sentence (BOS) and EOS labels to determine the most probable SUs and NSUs based on dynamic programming. To evaluate this task, we design an automatic, language-independent procedure to convert the Universal Dependencies corpora into sentence identification benchmarks. Finally, our experiments on the sentence identification task demonstrate that our proposed method generally outperforms sentence segmentation baselines which only utilize EOS labels.
We present SLATE, a sequence labeling approach for extracting tasks from free-form content such as digitally handwritten (or "inked") notes on a virtual whiteboard. Our approach allows us to create a single, low-latency model to simultaneously perform sentence segmentation and classification of these sentences into task/non-task sentences. SLATE greatly outperforms a baseline two-model (sentence segmentation followed by classification model) approach, achieving a task F1 score of 84.4%, a sentence segmentation (boundary similarity) score of 88.4% and three times lower latency compared to the baseline. Furthermore, we provide insights into tackling challenges of performing NLP on the inking domain. We release both our code and dataset for this novel task.
Having sufficient resources for language X lifts it from the under-resourced languages class, but not necessarily from the under-researched class. In this paper, we address the problem of the absence of organized benchmarks in the Turkish language. We demonstrate that languages such as Turkish are left behind the state-of-the-art in NLP applications. As a solution, we present Mukayese, a set of NLP benchmarks for the Turkish language that contains several NLP tasks. We work on one or more datasets for each benchmark and present two or more baselines. Moreover, we present four new benchmarking datasets in Turkish for language modeling, sentence segmentation, and spell checking. All datasets and baselines are available under: https://github.com/alisafaya/mukayese
Chinese sentiment analysis (CSA) has always been one of the challenges in natural language processing due to its complexity and uncertainty. Transformer has succeeded in capturing semantic features, but it uses position encoding to capture sequence features, which has great shortcomings compared with the recurrent model. In this paper, we propose T-E-GRU for Chinese sentiment analysis, which combine transformer encoder and GRU. We conducted experiments on three Chinese comment datasets. In view of the confusion of punctuation marks in Chinese comment texts, we selectively retain some punctuation marks with sentence segmentation ability. The experimental results show that T-E-GRU outperforms classic recurrent model and recurrent model with attention.
We present our contribution to the IWPT 2021 shared task on parsing into enhanced Universal Dependencies. Our main system component is a hybrid tree-graph parser that integrates (a) predictions of spanning trees for the enhanced graphs with (b) additional graph edges not present in the spanning trees. We also adopt a finetuning strategy where we first train a language-generic parser on the concatenation of data from all available languages, and then, in a second step, finetune on each individual language separately. Additionally, we develop our own complete set of pre-processing modules relevant to the shared task, including tokenization, sentence segmentation, and multiword token expansion, based on pre-trained XLM-R models and our own pre-training of character-level language models. Our submission reaches a macro-average ELAS of 89.24 on the test set. It ranks top among all teams, with a margin of more than 2 absolute ELAS over the next best-performing submission, and best score on 16 out of 17 languages.
The impact of social media on the modern world is difficult to overstate. Virtually all companies and public figures have social media accounts on popular platforms such as Twitter and Facebook. In China, the micro-blogging service provider, Sina Weibo, is the most popular such service. To influence public opinion, Weibo trolls -- the so called Water Army -- can be hired to post deceptive comments. In this paper, we focus on troll detection via sentiment analysis and other user activity data on the Sina Weibo platform. We implement techniques for Chinese sentence segmentation, word embedding, and sentiment score calculation. In recent years, troll detection and sentiment analysis have been studied, but we are not aware of previous research that considers troll detection based on sentiment analysis. We employ the resulting techniques to develop and test a sentiment analysis approach for troll detection, based on a variety of machine learning strategies. Experimental results are generated and analyzed. A Chrome extension is presented that implements our proposed technique, which enables real-time troll detection when a user browses Sina Weibo.
This paper explores the difficulties of annotating transcribed spoken Dutch-Frisian code-switch utterances into Universal Dependencies. We make use of data from the FAME! corpus, which consists of transcriptions and audio data. Besides the usual annotation difficulties, this dataset is extra challenging because of Frisian being low-resource, the informal nature of the data, code-switching and non-standard sentence segmentation. As a starting point, two annotators annotated 150 random utterances in three stages of 50 utterances. After each stage, disagreements where discussed and resolved. An increase of 7.8 UAS and 10.5 LAS points was achieved between the first and third round. This paper will focus on the issues that arise when annotating a transcribed speech corpus. To resolve these issues several solutions are proposed.
We introduce Trankit, a light-weight Transformer-based Toolkit for multilingual Natural Language Processing (NLP). It provides a trainable pipeline for fundamental NLP tasks over 100 languages, and 90 pretrained pipelines for 56 languages. Built on a state-of-the-art pretrained language model, Trankit significantly outperforms prior multilingual NLP pipelines over sentence segmentation, part-of-speech tagging, morphological feature tagging, and dependency parsing while maintaining competitive performance for tokenization, multi-word token expansion, and lemmatization over 90 Universal Dependencies treebanks. Despite the use of a large pretrained transformer, our toolkit is still efficient in memory usage and speed. This is achieved by our novel plug-and-play mechanism with Adapters where a multilingual pretrained transformer is shared across pipelines for different languages. Our toolkit along with pretrained models and code are publicly available at: https://github.com/nlp-uoregon/trankit. A demo website for our toolkit is also available at: http://nlp.uoregon.edu/trankit. Finally, we create a demo video for Trankit at: https://youtu.be/q0KGP3zGjGc.
Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a machine learning architecture, and within a transfer learning strategy is still an open question since it is highly dependent on each specific task and domain. Here, we explore various BERT-based architectures and transfer learning strategies (i.e., frozen or fine-tuned) for the task of biomedical RE on two corpora. Among tested architectures and strategies, our *BERT-segMCNN with finetuning reaches performances higher than the state-of-the-art on the two corpora (1.73 % and 32.77 % absolute improvement on ChemProt and PGxCorpus corpora respectively). More generally, our experiments illustrate the expected interest of fine-tuning with BERT, but also the unexplored advantage of using structural information (with sentence segmentation), in addition to the context classically leveraged by BERT.
Texts obtained from web are noisy and do not necessarily follow the orthographic sentence and word boundary rules. Thus, sentence segmentation and word tokenization systems that have been developed on well-formed texts might not perform so well on unedited web texts. In this paper, we first describe the manual annotation of sentence boundaries of an Estonian web dataset and then present the evaluation results of three existing sentence segmentation and word tokenization systems on this corpus: EstNLTK, Stanza and UDPipe. While EstNLTK obtains the highest performance compared to other systems on sentence segmentation on this dataset, the sentence segmentation performance of Stanza and UDPipe remains well below the results obtained on the more well-formed Estonian UD test set.
Despite being the seventh most widely spoken language in the world, Bengali has received much less attention in machine translation literature due to being low in resources. Most publicly available parallel corpora for Bengali are not large enough; and have rather poor quality, mostly because of incorrect sentence alignments resulting from erroneous sentence segmentation, and also because of a high volume of noise present in them. In this work, we build a customized sentence segmenter for Bengali and propose two novel methods for parallel corpus creation on low-resource setups: aligner ensembling and batch filtering. With the segmenter and the two methods combined, we compile a high-quality Bengali-English parallel corpus comprising of 2.75 million sentence pairs, more than 2 million of which were not available before. Training on neural models, we achieve an improvement of more than 9 BLEU score over previous approaches to Bengali-English machine translation. We also evaluate on a new test set of 1000 pairs made with extensive quality control. We release the segmenter, parallel corpus, and the evaluation set, thus elevating Bengali from its low-resource status. To the best of our knowledge, this is the first ever large scale study on Bengali-English machine translation. We believe our study will pave the way for future research on Bengali-English machine translation as well as other low-resource languages. Our data and code are available at https://github.com/csebuetnlp/banglanmt.