The question-answering system for Life science research, which is characterized by the rapid pace of discovery, evolving insights, and complex interactions among knowledge entities, presents unique challenges in maintaining a comprehensive knowledge warehouse and accurate information retrieval. To address these issues, we introduce BioRAG, a novel Retrieval-Augmented Generation (RAG) with the Large Language Models (LLMs) framework. Our approach starts with parsing, indexing, and segmenting an extensive collection of 22 million scientific papers as the basic knowledge, followed by training a specialized embedding model tailored to this domain. Additionally, we enhance the vector retrieval process by incorporating a domain-specific knowledge hierarchy, which aids in modeling the intricate interrelationships among each query and context. For queries requiring the most current information, BioRAG deconstructs the question and employs an iterative retrieval process incorporated with the search engine for step-by-step reasoning. Rigorous experiments have demonstrated that our model outperforms fine-tuned LLM, LLM with search engines, and other scientific RAG frameworks across multiple life science question-answering tasks.
We introduce SciQAG, a novel framework for automatically generating high-quality science question-answer pairs from a large corpus of scientific literature based on large language models (LLMs). SciQAG consists of a QA generator and a QA evaluator, which work together to extract diverse and research-level questions and answers from scientific papers. Utilizing this framework, we construct a large-scale, high-quality, open-ended science QA dataset containing 188,042 QA pairs extracted from 22,743 scientific papers across 24 scientific domains. We also introduce SciQAG-24D, a new benchmark task designed to evaluate the science question-answering ability of LLMs. Extensive experiments demonstrate that fine-tuning LLMs on the SciQAG dataset significantly improves their performance on both open-ended question answering and scientific tasks. To foster research and collaboration, we make the datasets, models, and evaluation codes publicly available, contributing to the advancement of science question answering and developing more interpretable and reasoning-capable AI systems.
In light of recent advances in multimodal Large Language Models (LLMs), there is increasing attention to scaling them from image-text data to more informative real-world videos. Compared to static images, video poses unique challenges for effective large-scale pre-training due to the modeling of its spatiotemporal dynamics. In this paper, we address such limitations in video-language pre-training with an efficient video decomposition that represents each video as keyframes and temporal motions. These are then adapted to an LLM using well-designed tokenizers that discretize visual and temporal information as a few tokens, thus enabling unified generative pre-training of videos, images, and text. At inference, the generated tokens from the LLM are carefully recovered to the original continuous pixel space to create various video content. Our proposed framework is both capable of comprehending and generating image and video content, as demonstrated by its competitive performance across 13 multimodal benchmarks in image and video understanding and generation. Our code and models are available at https://video-lavit.github.io.
Automated answer validation can help improve learning outcomes by providing appropriate feedback to learners, and by making question answering systems and online learning solutions more widely available. There have been some works in science question answering which show that information retrieval methods outperform neural methods, especially in the multiple choice version of this problem. We implement Siamese neural network models and produce a generalised solution to this problem. We compare our supervised model with other text similarity based solutions.
In Multimodal Large Language Models (MLLMs), a visual projector plays a crucial role in bridging pre-trained vision encoders with LLMs, enabling profound visual understanding while harnessing the LLMs' robust capabilities. Despite the importance of the visual projector, it has been relatively less explored. In this study, we first identify two essential projector properties: (i) flexibility in managing the number of visual tokens, crucial for MLLMs' overall efficiency, and (ii) preservation of local context from visual features, vital for spatial understanding. Based on these findings, we propose a novel projector design that is both flexible and locality-enhanced, effectively satisfying the two desirable properties. Additionally, we present comprehensive strategies to effectively utilize multiple and multifaceted instruction datasets. Through extensive experiments, we examine the impact of individual design choices. Finally, our proposed MLLM, Honeybee, remarkably outperforms previous state-of-the-art methods across various benchmarks, including MME, MMBench, SEED-Bench, and LLaVA-Bench, achieving significantly higher efficiency. Code and models are available at https://github.com/kakaobrain/honeybee.
Recently, growing interest has been aroused in extending the multimodal capability of large language models (LLMs), e.g., vision-language (VL) learning, which is regarded as the next milestone of artificial general intelligence. However, existing solutions are prohibitively expensive, which not only need to optimize excessive parameters, but also require another large-scale pre-training before VL instruction tuning. In this paper, we propose a novel and affordable solution for the effective VL adaption of LLMs, called Mixture-of-Modality Adaptation (MMA). Instead of using large neural networks to connect the image encoder and LLM, MMA adopts lightweight modules, i.e., adapters, to bridge the gap between LLMs and VL tasks, which also enables the joint optimization of the image and language models. Meanwhile, MMA is also equipped with a routing algorithm to help LLMs achieve an automatic shift between single- and multi-modal instructions without compromising their ability of natural language understanding. To validate MMA, we apply it to a recent LLM called LLaMA and term this formed large vision-language instructed model as LaVIN. To validate MMA and LaVIN, we conduct extensive experiments under two setups, namely multimodal science question answering and multimodal dialogue. The experimental results not only demonstrate the competitive performance and the superior training efficiency of LaVIN than existing multimodal LLMs, but also confirm its great potential as a general-purpose chatbot. More importantly, the actual expenditure of LaVIN is extremely cheap, e.g., only 1.4 training hours with 3.8M trainable parameters, greatly confirming the effectiveness of MMA. Our project is released at https://luogen1996.github.io/lavin.
Multimodal reasoning is a challenging task that requires models to reason across multiple modalities to answer questions. Existing approaches have made progress by incorporating language and visual modalities into a two-stage reasoning framework, separating rationale generation from answer inference. However, these approaches often fall short due to the inadequate quality of the generated rationales. In this work, we delve into the importance of rationales in model reasoning. We observe that when rationales are completely accurate, the model's accuracy significantly improves, highlighting the need for high-quality rationale generation. Motivated by this, we propose MC-CoT, a self-consistency training strategy that generates multiple rationales and answers, subsequently selecting the most accurate through a voting process. This approach not only enhances the quality of generated rationales but also leads to more accurate and robust answers. Through extensive experiments, we demonstrate that our approach significantly improves model performance across various benchmarks. Remarkably, we show that even smaller base models, when equipped with our proposed approach, can achieve results comparable to those of larger models, illustrating the potential of our approach in harnessing the power of rationales for improved multimodal reasoning. The code is available at https://github.com/chengtan9907/mc-cot.
Large language models record impressive performance on many natural language processing tasks. However, their knowledge capacity is limited to the pretraining corpus. Retrieval augmentation offers an effective solution by retrieving context from external knowledge sources to complement the language model. However, existing retrieval augmentation techniques ignore the structural relationships between these documents. Furthermore, retrieval models are not explored much in scientific tasks, especially in regard to the faithfulness of retrieved documents. In this paper, we propose a novel structure-aware retrieval augmented language model that accommodates document structure during retrieval augmentation. We create a heterogeneous document graph capturing multiple types of relationships (e.g., citation, co-authorship, etc.) that connect documents from more than 15 scientific disciplines (e.g., Physics, Medicine, Chemistry, etc.). We train a graph neural network on the curated document graph to act as a structural encoder for the corresponding passages retrieved during the model pretraining. Particularly, along with text embeddings of the retrieved passages, we obtain structural embeddings of the documents (passages) and fuse them together before feeding them to the language model. We evaluate our model extensively on various scientific benchmarks that include science question-answering and scientific document classification tasks. Experimental results demonstrate that structure-aware retrieval improves retrieving more coherent, faithful and contextually relevant passages, while showing a comparable performance in the overall accuracy.
Large language models have demonstrated impressive universal capabilities across a wide range of open-ended tasks and have extended their utility to encompass multimodal conversations. However, existing methods encounter challenges in effectively handling both image and video understanding, particularly with limited visual tokens. In this work, we introduce Chat-UniVi, a Unified Vision-language model capable of comprehending and engaging in conversations involving images and videos through a unified visual representation. Specifically, we employ a set of dynamic visual tokens to uniformly represent images and videos. This representation framework empowers the model to efficiently utilize a limited number of visual tokens to simultaneously capture the spatial details necessary for images and the comprehensive temporal relationship required for videos. Moreover, we leverage a multi-scale representation, enabling the model to perceive both high-level semantic concepts and low-level visual details. Notably, Chat-UniVi is trained on a mixed dataset containing both images and videos, allowing direct application to tasks involving both mediums without requiring any modifications. Extensive experimental results demonstrate that Chat-UniVi consistently outperforms even existing methods exclusively designed for either images or videos. Code is available at https://github.com/PKU-YuanGroup/Chat-UniVi.
In recent years, cross-modal reasoning (CMR), the process of understanding and reasoning across different modalities, has emerged as a pivotal area with applications spanning from multimedia analysis to healthcare diagnostics. As the deployment of AI systems becomes more ubiquitous, the demand for transparency and comprehensibility in these systems' decision-making processes has intensified. This survey delves into the realm of interpretable cross-modal reasoning (I-CMR), where the objective is not only to achieve high predictive performance but also to provide human-understandable explanations for the results. This survey presents a comprehensive overview of the typical methods with a three-level taxonomy for I-CMR. Furthermore, this survey reviews the existing CMR datasets with annotations for explanations. Finally, this survey summarizes the challenges for I-CMR and discusses potential future directions. In conclusion, this survey aims to catalyze the progress of this emerging research area by providing researchers with a panoramic and comprehensive perspective, illuminating the state of the art and discerning the opportunities. The summarized methods, datasets, and other resources are available at https://github.com/ZuyiZhou/Awesome-Interpretable-Cross-modal-Reasoning.
Despite the progress of foundation models, knowledge-based reasoning remains a persistent challenge due to their limited capacity for knowledge recall and inference. Existing methods primarily focus on encouraging these models to plan and solve problems or extensively sample reasoning chains independently. However, these methods often overlook conceptual errors and inferential fallacies, inevitably leading to a series of notorious issues such as misleading conclusions, cognitive biases, and reduced decision quality. While explicit modeling of causality is argued to hold promise in addressing these issues, contemporary research efforts have thus far fallen short in achieving causality-based foundation models. Drawing inspiration from the orchestration of diverse specialized agents collaborating to tackle intricate tasks, we propose a framework named Causal-Consistency Chain-of-Thought (CaCo-CoT) that harnesses multi-agent collaboration to bolster the faithfulness and causality of foundation models, involving a set of reasoners and evaluators. These agents collaboratively work within a reasoning-and-consensus paradigm to improve faithfulness. The reasoners are tasked with generating reasoning chains for knowledge-intensive problems by mimicking human causal reasoning. Meanwhile, the evaluator scrutinizes the causal consistency of a reasoner's reasoning chain from a non-causal and a counterfactual perspective. Our framework demonstrates significant superiority over state-of-the-art methods through extensive and comprehensive evaluations across text-based and multi-modal knowledge reasoning tasks (e.g., science question answering and commonsense reasoning).
Large Language Models (LLMs) have recently demonstrated exceptional performance in various Natural Language Processing (NLP) tasks. They have also shown the ability to perform chain-of-thought (CoT) reasoning to solve complex problems. Recent studies have explored CoT reasoning in complex multimodal scenarios, such as the science question answering task, by fine-tuning multimodal models with high-quality human-annotated CoT rationales. However, collecting high-quality COT rationales is usually time-consuming and costly. Besides, the annotated rationales are hardly accurate due to the external essential information missed. To address these issues, we propose a novel method termed T-SciQ that aims at teaching science question answering with LLM signals. The T-SciQ approach generates high-quality CoT rationales as teaching signals and is advanced to train much smaller models to perform CoT reasoning in complex modalities. Additionally, we introduce a novel data mixing strategy to produce more effective teaching data samples for simple and complex science question answer problems. Extensive experimental results show that our T-SciQ method achieves a new state-of-the-art performance on the ScienceQA benchmark, with an accuracy of 96.18%. Moreover, our approach outperforms the most powerful fine-tuned baseline by 4.5%. The code is publicly available at https://github.com/T-SciQ/T-SciQ.
Large language models (LLMs) have shown impressive performance on complex reasoning by leveraging chain-of-thought (CoT) prompting to generate intermediate reasoning chains as the rationale to infer the answer. However, existing CoT studies have primarily focused on the language modality. We propose Multimodal-CoT that incorporates language (text) and vision (images) modalities into a two-stage framework that separates rationale generation and answer inference. In this way, answer inference can leverage better generated rationales that are based on multimodal information. Experimental results on ScienceQA and A-OKVQA benchmark datasets show the effectiveness of our proposed approach. With Multimodal-CoT, our model under 1 billion parameters achieves state-of-the-art performance on the ScienceQA benchmark. Our analysis indicates that Multimodal-CoT offers the advantages of mitigating hallucination and enhancing convergence speed. Code is publicly available at https://github.com/amazon-science/mm-cot.
We propose a simple refactoring of multi-choice question answering (MCQA) tasks as a series of binary classifications. The MCQA task is generally performed by scoring each (question, answer) pair normalized over all the pairs, and then selecting the answer from the pair that yield the highest score. For n answer choices, this is equivalent to an n-class classification setup where only one class (true answer) is correct. We instead show that classifying (question, true answer) as positive instances and (question, false answer) as negative instances is significantly more effective across various models and datasets. We show the efficacy of our proposed approach in different tasks -- abductive reasoning, commonsense question answering, science question answering, and sentence completion. Our DeBERTa binary classification model reaches the top or close to the top performance on public leaderboards for these tasks. The source code of the proposed approach is available at https://github.com/declare-lab/TEAM.
When answering a question, humans utilize the information available across different modalities to synthesize a consistent and complete chain of thought (CoT). This process is normally a black box in the case of deep learning models like large-scale language models. Recently, science question benchmarks have been used to diagnose the multi-hop reasoning ability and interpretability of an AI system. However, existing datasets fail to provide annotations for the answers, or are restricted to the textual-only modality, small scales, and limited domain diversity. To this end, we present Science Question Answering (ScienceQA), a new benchmark that consists of ~21k multimodal multiple choice questions with a diverse set of science topics and annotations of their answers with corresponding lectures and explanations. We further design language models to learn to generate lectures and explanations as the chain of thought (CoT) to mimic the multi-hop reasoning process when answering ScienceQA questions. ScienceQA demonstrates the utility of CoT in language models, as CoT improves the question answering performance by 1.20% in few-shot GPT-3 and 3.99% in fine-tuned UnifiedQA. We also explore the upper bound for models to leverage explanations by feeding those in the input; we observe that it improves the few-shot performance of GPT-3 by 18.96%. Our analysis further shows that language models, similar to humans, benefit from explanations to learn from fewer data and achieve the same performance with just 40% of the data. The data and code are available at https://scienceqa.github.io.
In multiple-choice exams, students select one answer from among typically four choices and can explain why they made that particular choice. Students are good at understanding natural language questions and based on their domain knowledge can easily infer the question's answer by 'connecting the dots' across various pertinent facts. Considering automated reasoning for elementary science question answering, we address the novel task of generating explanations for answers from human-authored facts. For this, we examine the practically scalable framework of feature-rich support vector machines leveraging domain-targeted, hand-crafted features. Explanations are created from a human-annotated set of nearly 5,000 candidate facts in the WorldTree corpus. Our aim is to obtain better matches for valid facts of an explanation for the correct answer of a question over the available fact candidates. To this end, our features offer a comprehensive linguistic and semantic unification paradigm. The machine learning problem is the preference ordering of facts, for which we test pointwise regression versus pairwise learning-to-rank. Our contributions are: (1) a case study in which two preference ordering approaches are systematically compared; (2) it is a practically competent approach that can outperform some variants of BERT-based reranking models; and (3) the human-engineered features make it an interpretable machine learning model for the task.
We propose a novel Chain Guided Retriever-reader ({\tt CGR}) framework to model the reasoning chain for multi-hop Science Question Answering. Our framework is capable of performing explainable reasoning without the need of any corpus-specific annotations, such as the ground-truth reasoning chain, or human-annotated entity mentions. Specifically, we first generate reasoning chains from a semantic graph constructed by Abstract Meaning Representation of retrieved evidence facts. A \textit{Chain-aware loss}, concerning both local and global chain information, is also designed to enable the generated chains to serve as distant supervision signals for training the retriever, where reinforcement learning is also adopted to maximize the utility of the reasoning chains. Our framework allows the retriever to capture step-by-step clues of the entire reasoning process, which is not only shown to be effective on two challenging multi-hop Science QA tasks, namely OpenBookQA and ARC-Challenge, but also favors explainability.
Knowledge retrieval and reasoning are two key stages in multi-hop question answering (QA) at web scale. Existing approaches suffer from low confidence when retrieving evidence facts to fill the knowledge gap and lack transparent reasoning process. In this paper, we propose a new framework to exploit more valid facts while obtaining explainability for multi-hop QA by dynamically constructing a semantic graph and reasoning over it. We employ Abstract Meaning Representation (AMR) as semantic graph representation. Our framework contains three new ideas: (a) {\tt AMR-SG}, an AMR-based Semantic Graph, constructed by candidate fact AMRs to uncover any hop relations among question, answer and multiple facts. (b) A novel path-based fact analytics approach exploiting {\tt AMR-SG} to extract active facts from a large fact pool to answer questions. (c) A fact-level relation modeling leveraging graph convolution network (GCN) to guide the reasoning process. Results on two scientific multi-hop QA datasets show that we can surpass recent approaches including those using additional knowledge graphs while maintaining high explainability on OpenBookQA and achieve a new state-of-the-art result on ARC-Challenge in a computationally practicable setting.
This paper describes N-XKT (Neural encoding based on eXplanatory Knowledge Transfer), a novel method for the automatic transfer of explanatory knowledge through neural encoding mechanisms. We demonstrate that N-XKT is able to improve accuracy and generalization on science Question Answering (QA). Specifically, by leveraging facts from background explanatory knowledge corpora, the N-XKT model shows a clear improvement on zero-shot QA. Furthermore, we show that N-XKT can be fine-tuned on a target QA dataset, enabling faster convergence and more accurate results. A systematic analysis is conducted to quantitatively analyze the performance of the N-XKT model and the impact of different categories of knowledge on the zero-shot generalization task.
We propose a novel approach for answering and explaining multiple-choice science questions by reasoning on grounding and abstract inference chains. This paper frames question answering as an abductive reasoning problem, constructing plausible explanations for each choice and then selecting the candidate with the best explanation as the final answer. Our system, ExplanationLP, elicits explanations by constructing a weighted graph of relevant facts for each candidate answer and extracting the facts that satisfy certain structural and semantic constraints. To extract the explanations, we employ a linear programming formalism designed to select the optimal subgraph. The graphs' weighting function is composed of a set of parameters, which we fine-tune to optimize answer selection performance. We carry out our experiments on the WorldTree and ARC-Challenge corpus to empirically demonstrate the following conclusions: (1) Grounding-Abstract inference chains provides the semantic control to perform explainable abductive reasoning (2) Efficiency and robustness in learning with a fewer number of parameters by outperforming contemporary explainable and transformer-based approaches in a similar setting (3) Generalisability by outperforming SOTA explainable approaches on general science question sets.