Autism spectrum disorder is one of the leading neurodevelopmental disorders in our world, present in over 1% of the population and rapidly increasing in prevalence, yet the condition lacks a robust, objective, and efficient diagnostic. Clinical diagnostic criteria rely on subjective behavioral assessments, which are prone to misdiagnosis as they face limitations in terms of their heterogeneity, specificity, and biases. This study proposes a novel convolutional neural network-based classification tool that aims to identify the potential of different neuroimaging features as autism biomarkers. The model is constructed using a set of sequential layers specifically designed to extract relevant features from brain imaging data. Trained and tested on over 300,000 distinct features across three imaging types, the model shows promise in classifying individuals with autism from typical controls, outperforming metrics of current gold standard diagnostics by achieving an accuracy of 95.4% on a dataset of 1,111 samples with 521 autistic subjects (260 male and 261 female) and 590 controls (297 male and 293 female). 32 optimal features from the training data were identified and classified as candidate biomarkers using an independent samples t-test, in which functional features such as connectivity and the time series of signal intensity from each voxel exhibited the highest mean value differences between individuals with autism and typical control subjects. The p-values of these biomarkers were < 0.001, proving the statistical significance of the results and indicating that this research could pave the way towards the usage of neuroimaging in conjunction with behavioral criteria in clinics.
Hyperalignment has been widely employed in Multivariate Pattern (MVP) analysis to discover the cognitive states in the human brains based on multi-subject functional Magnetic Resonance Imaging (fMRI) datasets. Most of the existing HA methods utilized unsupervised approaches, where they only maximized the correlation between the voxels with the same position in the time series. However, these unsupervised solutions may not be optimum for handling the functional alignment in the supervised MVP problems. This paper proposes a Supervised Hyperalignment (SHA) method to ensure better functional alignment for MVP analysis, where the proposed method provides a supervised shared space that can maximize the correlation among the stimuli belonging to the same category and minimize the correlation between distinct categories of stimuli. Further, SHA employs a generalized optimization solution, which generates the shared space and calculates the mapped features in a single iteration, hence with optimum time and space complexities for large datasets. Experiments on multi-subject datasets demonstrate that SHA method achieves up to 19% better performance for multi-class problems over the state-of-the-art HA algorithms.
Multi-subject fMRI data analysis is an interesting and challenging problem in human brain decoding studies. The inherent anatomical and functional variability across subjects make it necessary to do both anatomical and functional alignment before classification analysis. Besides, when it comes to big data, time complexity becomes a problem that cannot be ignored. This paper proposes Gradient Hyperalignment (Gradient-HA) as a gradient-based functional alignment method that is suitable for multi-subject fMRI datasets with large amounts of samples and voxels. The advantage of Gradient-HA is that it can solve independence and high dimension problems by using Independent Component Analysis (ICA) and Stochastic Gradient Ascent (SGA). Validation using multi-classification tasks on big data demonstrates that Gradient-HA method has less time complexity and better or comparable performance compared with other state-of-the-art functional alignment methods.
Multivariate Pattern (MVP) classification can map different cognitive states to the brain tasks. One of the main challenges in MVP analysis is validating the generated results across subjects. However, analyzing multi-subject fMRI data requires accurate functional alignments between neuronal activities of different subjects, which can rapidly increase the performance and robustness of the final results. Hyperalignment (HA) is one of the most effective functional alignment methods, which can be mathematically formulated by the Canonical Correlation Analysis (CCA) methods. Since HA mostly uses the unsupervised CCA techniques, its solution may not be optimized for MVP analysis. By incorporating the idea of Local Discriminant Analysis (LDA) into CCA, this paper proposes Local Discriminant Hyperalignment (LDHA) as a novel supervised HA method, which can provide better functional alignment for MVP analysis. Indeed, the locality is defined based on the stimuli categories in the train-set, where the correlation between all stimuli in the same category will be maximized and the correlation between distinct categories of stimuli approaches to near zero. Experimental studies on multi-subject MVP analysis confirm that the LDHA method achieves superior performance to other state-of-the-art HA algorithms.