Large Language Models (LLMs) have shown strong inductive reasoning ability across various domains, but their reliability is hindered by the outdated knowledge and hallucinations. Retrieval-Augmented Generation mitigates these issues by grounding LLMs with external knowledge; however, most existing RAG pipelines rely on unstructured text, limiting interpretability and structured reasoning. Knowledge graphs, which represent facts as relational triples, offer a more structured and compact alternative. Recent studies have explored integrating knowledge graphs with LLMs for knowledge graph question answering (KGQA), with a significant proportion adopting the retrieve-then-reasoning paradigm. In this framework, graph-based retrievers have demonstrated strong empirical performance, yet they still face challenges in generalization ability. In this work, we propose RAPL, a novel framework for efficient and effective graph retrieval in KGQA. RAPL addresses these limitations through three aspects: (1) a two-stage labeling strategy that combines heuristic signals with parametric models to provide causally grounded supervision; (2) a model-agnostic graph transformation approach to capture both intra- and inter-triple interactions, thereby enhancing representational capacity; and (3) a path-based reasoning strategy that facilitates learning from the injected rational knowledge, and supports downstream reasoner through structured inputs. Empirically, RAPL outperforms state-of-the-art methods by $2.66\%-20.34\%$, and significantly reduces the performance gap between smaller and more powerful LLM-based reasoners, as well as the gap under cross-dataset settings, highlighting its superior retrieval capability and generalizability. Codes are available at: https://github.com/tianyao-aka/RAPL.
Knowledge Graph Question Answering (KGQA) systems rely on high-quality benchmarks to evaluate complex multi-hop reasoning. However, despite their widespread use, popular datasets such as WebQSP and CWQ suffer from critical quality issues, including inaccurate or incomplete ground-truth annotations, poorly constructed questions that are ambiguous, trivial, or unanswerable, and outdated or inconsistent knowledge. Through a manual audit of 16 popular KGQA datasets, including WebQSP and CWQ, we find that the average factual correctness rate is only 57 %. To address these issues, we introduce KGQAGen, an LLM-in-the-loop framework that systematically resolves these pitfalls. KGQAGen combines structured knowledge grounding, LLM-guided generation, and symbolic verification to produce challenging and verifiable QA instances. Using KGQAGen, we construct KGQAGen-10k, a ten-thousand scale benchmark grounded in Wikidata, and evaluate a diverse set of KG-RAG models. Experimental results demonstrate that even state-of-the-art systems struggle on this benchmark, highlighting its ability to expose limitations of existing models. Our findings advocate for more rigorous benchmark construction and position KGQAGen as a scalable framework for advancing KGQA evaluation.
Recently, large language models (LLMs) have demonstrated impressive performance in Knowledge Graph Question Answering (KGQA) tasks, which aim to find answers based on knowledge graphs (KGs) for natural language questions. Existing LLMs-based KGQA methods typically follow the Graph Retrieval-Augmented Generation (GraphRAG) paradigm, which first retrieves reasoning paths from the large KGs, and then generates the answers based on them. However, these methods emphasize the exploration of new optimal reasoning paths in KGs while ignoring the exploitation of historical reasoning paths, which may lead to sub-optimal reasoning paths. Additionally, the complex semantics contained in questions may lead to the retrieval of inaccurate reasoning paths. To address these issues, this paper proposes a novel and training-free framework for KGQA tasks called Reward-guided Tree Search on Graph (RTSoG). RTSoG decomposes an original question into a series of simpler and well-defined sub-questions to handle the complex semantics. Then, a Self-Critic Monte Carlo Tree Search (SC-MCTS) guided by a reward model is introduced to iteratively retrieve weighted reasoning paths as contextual knowledge. Finally, it stacks the weighted reasoning paths according to their weights to generate the final answers. Extensive experiments on four datasets demonstrate the effectiveness of RTSoG. Notably, it achieves 8.7\% and 7.0\% performance improvement over the state-of-the-art method on the GrailQA and the WebQSP respectively.
The rise of Large Language Models (LLMs) has redefined the AI landscape, particularly due to their ability to encode factual and commonsense knowledge, and their outstanding performance in tasks requiring reasoning. Despite these advances, hallucinations and reasoning errors remain a significant barrier to their deployment in high-stakes settings. In this work, we observe that even the most prominent LLMs, such as OpenAI-o1, suffer from high rates of reasoning errors and hallucinations on tasks requiring commonsense reasoning over obscure, long-tail entities. To investigate this limitation, we present a new dataset for Commonsense reasoning over Long-Tail entities (CoLoTa), that consists of 3,300 queries from question answering and claim verification tasks and covers a diverse range of commonsense reasoning skills. We remark that CoLoTa can also serve as a Knowledge Graph Question Answering (KGQA) dataset since the support of knowledge required to answer its queries is present in the Wikidata knowledge graph. However, as opposed to existing KGQA benchmarks that merely focus on factoid questions, our CoLoTa queries also require commonsense reasoning. Our experiments with strong LLM-based KGQA methodologies indicate their severe inability to answer queries involving commonsense reasoning. Hence, we propose CoLoTa as a novel benchmark for assessing both (i) LLM commonsense reasoning capabilities and their robustness to hallucinations on long-tail entities and (ii) the commonsense reasoning capabilities of KGQA methods.
Large language models (LLMs) have demonstrated transformative potential across various domains, yet they face significant challenges in knowledge integration and complex problem reasoning, often leading to hallucinations and unreliable outputs. Retrieval-Augmented Generation (RAG) has emerged as a promising solution to enhance LLMs accuracy by incorporating external knowledge. However, traditional RAG systems struggle with processing complex relational information and multi-step reasoning, limiting their effectiveness in advanced problem-solving tasks. To address these limitations, we propose CogGRAG, a cognition inspired graph-based RAG framework, designed to improve LLMs performance in Knowledge Graph Question Answering (KGQA). Inspired by the human cognitive process of decomposing complex problems and performing self-verification, our framework introduces a three-stage methodology: decomposition, retrieval, and reasoning with self-verification. By integrating these components, CogGRAG enhances the accuracy of LLMs in complex problem solving. We conduct systematic experiments with three LLM backbones on four benchmark datasets, where CogGRAG outperforms the baselines.
Question answering (QA) requires accurately aligning user questions with structured queries, a process often limited by the scarcity of high-quality query-natural language (Q-NL) pairs. To overcome this, we present Q-NL Verifier, an approach to generating high-quality synthetic pairs of queries and NL translations. Our approach relies on large language models (LLMs) to generate semantically precise natural language paraphrases of structured queries. Building on these synthetic Q-NL pairs, we introduce a learned verifier component that automatically determines whether a generated paraphrase is semantically equivalent to the original query. Our experiments with the well-known LC-QuAD 2.0 benchmark show that Q-NL Verifier generalizes well to paraphrases from other models and even human-authored translations. Our approach strongly aligns with human judgments across varying query complexities and outperforms existing NLP metrics in assessing semantic correctness. We also integrate the verifier into QA pipelines, showing that verifier-filtered synthetic data has significantly higher quality in terms of translation correctness and enhances NL to Q translation accuracy. Lastly, we release an updated version of the LC-QuAD 2.0 benchmark containing our synthetic Q-NL pairs and verifier scores, offering a new resource for robust and scalable QA.
Due to the remarkable reasoning ability, Large language models (LLMs) have demonstrated impressive performance in knowledge graph question answering (KGQA) tasks, which find answers to natural language questions over knowledge graphs (KGs). To alleviate the hallucinations and lack of knowledge issues of LLMs, existing methods often retrieve the question-related information from KGs to enrich the input context. However, most methods focus on retrieving the relevant information while ignoring the importance of different types of knowledge in reasoning, which degrades their performance. To this end, this paper reformulates the KGQA problem as a graphical model and proposes a three-stage framework named the Evidence Path Enhanced Reasoning Model (EPERM) for KGQA. In the first stage, EPERM uses the fine-tuned LLM to retrieve a subgraph related to the question from the original knowledge graph. In the second stage, EPERM filters out the evidence paths that faithfully support the reasoning of the questions, and score their importance in reasoning. Finally, EPERM uses the weighted evidence paths to reason the final answer. Since considering the importance of different structural information in KGs for reasoning, EPERM can improve the reasoning ability of LLMs in KGQA tasks. Extensive experiments on benchmark datasets demonstrate that EPERM achieves superior performances in KGQA tasks.
Large language models (LLMs) have shown remarkable capabilities in natural language processing. However, in knowledge graph question answering tasks (KGQA), there remains the issue of answering questions that require multi-hop reasoning. Existing methods rely on entity vector matching, but the purpose of the question is abstract and difficult to match with specific entities. As a result, it is difficult to establish reasoning paths to the purpose, which leads to information loss and redundancy. To address this issue, inspired by human reverse thinking, we propose Ontology-Guided Reverse Thinking (ORT), a novel framework that constructs reasoning paths from purposes back to conditions. ORT operates in three key phases: (1) using LLM to extract purpose labels and condition labels, (2) constructing label reasoning paths based on the KG ontology, and (3) using the label reasoning paths to guide knowledge retrieval. Experiments on the WebQSP and CWQ datasets show that ORT achieves state-of-the-art performance and significantly enhances the capability of LLMs for KGQA.
Mitigating positional bias of language models (LMs) for listwise inputs is a well-known and important problem (e.g., lost-in-the-middle). While zero-shot order-invariant LMs have been proposed to solve this issue, their success on practical listwise problems has been limited. In this work, as a first contribution, we identify and overcome two limitations to make zero-shot invariant LMs more practical: (1) training and inference distribution mismatch arising from modifying positional ID assignments to enforce invariance, and (2) failure to adapt to a mixture of order-invariant and sensitive inputs in practical listwise problems. To overcome, we propose (1) RoToR, a zero-shot invariant LM for genuinely order-invariant inputs with minimal modifications of positional IDs, and (2) Selective Routing, an adaptive framework that handles both order-invariant and order-sensitive inputs in listwise tasks. On the Lost in the middle (LitM), Knowledge Graph Question Answering (KGQA), and MMLU benchmarks, we show that RoToR with Selective Routing can effectively handle practical listwise input tasks in a zero-shot manner.
Visual Question Answering (VQA) is a challenging problem that requires to process multimodal input. Answer-Set Programming (ASP) has shown great potential in this regard to add interpretability and explainability to modular VQA architectures. In this work, we address the problem of how to integrate ASP with modules for vision and natural language processing to solve a new and demanding VQA variant that is concerned with images of graphs (not graphs in symbolic form). Images containing graph-based structures are an ubiquitous and popular form of visualisation. Here, we deal with the particular problem of graphs inspired by transit networks, and we introduce a novel dataset that amends an existing one by adding images of graphs that resemble metro lines. Our modular neuro-symbolic approach combines optical graph recognition for graph parsing, a pretrained optical character recognition neural network for parsing labels, Large Language Models (LLMs) for language processing, and ASP for reasoning. This method serves as a first baseline and achieves an overall average accuracy of 73% on the dataset. Our evaluation provides further evidence of the potential of modular neuro-symbolic systems, in particular with pretrained models that do not involve any further training and logic programming for reasoning, to solve complex VQA tasks.
Most existing Knowledge Graph Question Answering (KGQA) approaches are designed for a specific KG, such as Wikidata, DBpedia or Freebase. Due to the heterogeneity of the underlying graph schema, topology and assertions, most KGQA systems cannot be transferred to unseen Knowledge Graphs (KGs) without resource-intensive training data. We present OntoSCPrompt, a novel Large Language Model (LLM)-based KGQA approach with a two-stage architecture that separates semantic parsing from KG-dependent interactions. OntoSCPrompt first generates a SPARQL query structure (including SPARQL keywords such as SELECT, ASK, WHERE and placeholders for missing tokens) and then fills them with KG-specific information. To enhance the understanding of the underlying KG, we present an ontology-guided, hybrid prompt learning strategy that integrates KG ontology into the learning process of hybrid prompts (e.g., discrete and continuous vectors). We also present several task-specific decoding strategies to ensure the correctness and executability of generated SPARQL queries in both stages. Experimental results demonstrate that OntoSCPrompt performs as well as SOTA approaches without retraining on a number of KGQA datasets such as CWQ, WebQSP and LC-QuAD 1.0 in a resource-efficient manner and can generalize well to unseen domain-specific KGs like DBLP-QuAD and CoyPu KG Code: \href{https://github.com/LongquanJiang/OntoSCPrompt}{https://github.com/LongquanJiang/OntoSCPrompt}
Question answering systems for knowledge graph (KGQA), answer factoid questions based on the data in the knowledge graph. KGQA systems are complex because the system has to understand the relations and entities in the knowledge-seeking natural language queries and map them to structured queries against the KG to answer them. In this paper, we introduce Chronos, a comprehensive evaluation framework for KGQA at industry scale. It is designed to evaluate such a multi-component system comprehensively, focusing on (1) end-to-end and component-level metrics, (2) scalable to diverse datasets and (3) a scalable approach to measure the performance of the system prior to release. In this paper, we discuss the unique challenges associated with evaluating KGQA systems at industry scale, review the design of Chronos, and how it addresses these challenges. We will demonstrate how it provides a base for data-driven decisions and discuss the challenges of using it to measure and improve a real-world KGQA system.
Question answering systems are the latest evolution in information retrieval technology, designed to accept complex queries in natural language and provide accurate answers using both unstructured and structured knowledge sources. Knowledge Graph Question Answering (KGQA) systems fulfill users' information needs by utilizing structured data, representing a vast number of facts as a graph. However, despite significant advancements, major challenges persist in answering multi-hop complex questions, particularly in Persian. One of the main challenges is the accurate understanding and transformation of these multi-hop complex questions into semantically equivalent SPARQL queries, which allows for precise answer retrieval from knowledge graphs. In this study, to address this issue, a dataset of 5,600 Persian multi-hop complex questions was developed, along with their decomposed forms based on the semantic representation of the questions. Following this, Persian language models were trained using this dataset, and an architecture was proposed for answering complex questions using a Persian knowledge graph. Finally, the proposed method was evaluated against similar systems on the PeCoQ dataset. The results demonstrated the superiority of our approach, with an improvement of 12.57% in F1-score and 12.06% in accuracy compared to the best comparable method.
The success of Large Language Models (LLMs) in various domains has led researchers to apply them to graph-related problems by converting graph data into natural language text. However, unlike graph data, natural language inherently has sequential order. We observe a counter-intuitive fact that when the order of nodes or edges in the natural language description of a graph is shuffled, despite describing the same graph, model performance fluctuates between high performance and random guessing. Additionally, due to LLMs' limited input context length, current methods typically randomly sample neighbors of target nodes as representatives of their neighborhood, which may not always be effective for accurate reasoning. To address these gaps, we introduce GraphSOS (Graph Sampling and Order Selection). This novel model framework features an Order Selector Module to ensure proper serialization order of the graph and a Subgraph Sampling Module to sample subgraphs with better structure for better reasoning. Furthermore, we propose Graph CoT obtained through distillation, and enhance LLM's reasoning and zero-shot learning capabilities for graph tasks through instruction tuning. Experiments on multiple datasets for node classification and graph question-answering demonstrate that GraphSOS improves LLMs' performance and generalization ability on graph tasks.
Large language models (LLMs) demonstrate exceptional performance across a variety of tasks, yet they are often affected by hallucinations and the timeliness of knowledge. Leveraging knowledge graphs (KGs) as external knowledge sources has emerged as a viable solution, but existing methods for LLM-based knowledge graph question answering (KGQA) are often limited by step-by-step decision-making on KGs, restricting the global planning and reasoning capabilities of LLMs, or they require fine-tuning or pre-training on specific KGs. To address these challenges, we propose Knowledge graph Assisted Reasoning Path Aggregation (KARPA), a novel framework that harnesses the global planning abilities of LLMs for efficient and accurate KG reasoning. KARPA operates in three steps: pre-planning relation paths using the LLM's global planning capabilities, matching semantically relevant paths via an embedding model, and reasoning over these paths to generate answers. Unlike existing KGQA methods, KARPA avoids stepwise traversal, requires no additional training, and is adaptable to various LLM architectures. Extensive experimental results show that KARPA achieves state-of-the-art performance in KGQA tasks, delivering both high efficiency and accuracy. Our code will be available on Github.
Large Language Models (LLMs) demonstrate remarkable capabilities, yet struggle with hallucination and outdated knowledge when tasked with complex knowledge reasoning, resulting in factually incorrect outputs. Previous studies have attempted to mitigate it by retrieving factual knowledge from large-scale knowledge graphs (KGs) to assist LLMs in logical reasoning and prediction of answers. However, this kind of approach often introduces noise and irrelevant data, especially in situations with extensive context from multiple knowledge aspects. In this way, LLM attention can be potentially mislead from question and relevant information. In our study, we introduce an Adaptive Multi-Aspect Retrieval-augmented over KGs (Amar) framework. This method retrieves knowledge including entities, relations, and subgraphs, and converts each piece of retrieved text into prompt embeddings. The Amar framework comprises two key sub-components: 1) a self-alignment module that aligns commonalities among entities, relations, and subgraphs to enhance retrieved text, thereby reducing noise interference; 2) a relevance gating module that employs a soft gate to learn the relevance score between question and multi-aspect retrieved data, to determine which information should be used to enhance LLMs' output, or even filtered altogether. Our method has achieved state-of-the-art performance on two common datasets, WebQSP and CWQ, showing a 1.9\% improvement in accuracy over its best competitor and a 6.6\% improvement in logical form generation over a method that directly uses retrieved text as context prompts. These results demonstrate the effectiveness of Amar in improving the reasoning of LLMs.
Diet plays a critical role in human health, yet tailoring dietary reasoning to individual health conditions remains a major challenge. Nutrition Question Answering (QA) has emerged as a popular method for addressing this problem. However, current research faces two critical limitations. On one hand, the absence of datasets involving user-specific medical information severely limits \textit{personalization}. This challenge is further compounded by the wide variability in individual health needs. On the other hand, while large language models (LLMs), a popular solution for this task, demonstrate strong reasoning abilities, they struggle with the domain-specific complexities of personalized healthy dietary reasoning, and existing benchmarks fail to capture these challenges. To address these gaps, we introduce the Nutritional Graph Question Answering (NGQA) benchmark, the first graph question answering dataset designed for personalized nutritional health reasoning. NGQA leverages data from the National Health and Nutrition Examination Survey (NHANES) and the Food and Nutrient Database for Dietary Studies (FNDDS) to evaluate whether a food is healthy for a specific user, supported by explanations of the key contributing nutrients. The benchmark incorporates three question complexity settings and evaluates reasoning across three downstream tasks. Extensive experiments with LLM backbones and baseline models demonstrate that the NGQA benchmark effectively challenges existing models. In sum, NGQA addresses a critical real-world problem while advancing GraphQA research with a novel domain-specific benchmark.
Large language models (LLMs) based on generative pre-trained Transformer have achieved remarkable performance on knowledge graph question-answering (KGQA) tasks. However, LLMs often produce ungrounded subgraph planning or reasoning results in KGQA due to the hallucinatory behavior brought by the generative paradigm, which may hinder the advancement of the LLM-based KGQA model. To deal with the issue, we propose a novel LLM-based Discriminative Reasoning (LDR) method to explicitly model the subgraph retrieval and answer inference process. By adopting discriminative strategies, the proposed LDR method not only enhances the capability of LLMs to retrieve question-related subgraphs but also alleviates the issue of ungrounded reasoning brought by the generative paradigm of LLMs. Experimental results show that the proposed approach outperforms multiple strong comparison methods, along with achieving state-of-the-art performance on two widely used WebQSP and CWQ benchmarks.
With the increasing prevalence of cross-domain Text-Attributed Graph (TAG) Data (e.g., citation networks, recommendation systems, social networks, and ai4science), the integration of Graph Neural Networks (GNNs) and Large Language Models (LLMs) into a unified Model architecture (e.g., LLM as enhancer, LLM as collaborators, LLM as predictor) has emerged as a promising technological paradigm. The core of this new graph learning paradigm lies in the synergistic combination of GNNs' ability to capture complex structural relationships and LLMs' proficiency in understanding informative contexts from the rich textual descriptions of graphs. Therefore, we can leverage graph description texts with rich semantic context to fundamentally enhance Data quality, thereby improving the representational capacity of model-centric approaches in line with data-centric machine learning principles. By leveraging the strengths of these distinct neural network architectures, this integrated approach addresses a wide range of TAG-based Task (e.g., graph learning, graph reasoning, and graph question answering), particularly in complex industrial scenarios (e.g., supervised, few-shot, and zero-shot settings). In other words, we can treat text as a medium to enable cross-domain generalization of graph learning Model, allowing a single graph model to effectively handle the diversity of downstream graph-based Task across different data domains. This work serves as a foundational reference for researchers and practitioners looking to advance graph learning methodologies in the rapidly evolving landscape of LLM. We consistently maintain the related open-source materials at \url{https://github.com/xkLi-Allen/Awesome-GNN-in-LLMs-Papers}.
Autoregressive large language models (LLMs) pre-trained by next token prediction are inherently proficient in generative tasks. However, their performance on knowledge-driven tasks such as factual knowledge querying remains unsatisfactory. Knowledge graphs (KGs), as high-quality structured knowledge bases, can provide reliable knowledge for LLMs, potentially compensating for their knowledge deficiencies. Aligning LLMs with explicit, structured knowledge from KGs has been a challenge; previous attempts either failed to effectively align knowledge representations or compromised the generative capabilities of LLMs, leading to less-than-optimal outcomes. This paper proposes \textbf{KaLM}, a \textit{Knowledge-aligned Language Modeling} approach, which fine-tunes autoregressive LLMs to align with KG knowledge via the joint objective of explicit knowledge alignment and implicit knowledge alignment. The explicit knowledge alignment objective aims to directly optimize the knowledge representation of LLMs through dual-view knowledge graph contrastive learning. The implicit knowledge alignment objective focuses on incorporating textual patterns of knowledge into LLMs through triple completion language modeling. Notably, our method achieves a significant performance boost in evaluations of knowledge-driven tasks, specifically embedding-based knowledge graph completion and generation-based knowledge graph question answering.