In recent years, models based on Graph Convolutional Networks (GCN) have made significant strides in the field of graph data analysis. However, challenges such as over-smoothing and over-compression remain when handling large-scale and complex graph datasets, leading to a decline in clustering quality. Although the Graph Transformer architecture has mitigated some of these issues, its performance is still limited when processing heterogeneous graph data. To address these challenges, this study proposes a novel deep clustering framework that comprising GCN, Autoencoder (AE), and Graph Transformer, termed the Tri-Learn Graph Fusion Network (Tri-GFN). This framework enhances the differentiation and consistency of global and local information through a unique tri-learning mechanism and feature fusion enhancement strategy. The framework integrates GCN, AE, and Graph Transformer modules. These components are meticulously fused by a triple-channel enhancement module, which maximizes the use of both node attributes and topological structures, ensuring robust clustering representation. The tri-learning mechanism allows mutual learning among these modules, while the feature fusion strategy enables the model to capture complex relationships, yielding highly discriminative representations for graph clustering. It surpasses many state-of-the-art methods, achieving an accuracy improvement of approximately 0.87% on the ACM dataset, 14.14 % on the Reuters dataset, and 7.58 % on the USPS dataset. Due to its outstanding performance on the Reuters dataset, Tri-GFN can be applied to automatic news classification, topic retrieval, and related fields.
Research on Graph Structure Learning (GSL) provides key insights for graph-based clustering, yet current methods like Graph Neural Networks (GNNs), Graph Attention Networks (GATs), and contrastive learning often rely heavily on the original graph structure. Their performance deteriorates when the original graph's adjacency matrix is too sparse or contains noisy edges unrelated to clustering. Moreover, these methods depend on learning node embeddings and using traditional techniques like k-means to form clusters, which may not fully capture the underlying graph structure between nodes. To address these limitations, this paper introduces DeSE, a novel unsupervised graph clustering framework incorporating Deep Structural Entropy. It enhances the original graph with quantified structural information and deep neural networks to form clusters. Specifically, we first propose a method for calculating structural entropy with soft assignment, which quantifies structure in a differentiable form. Next, we design a Structural Learning layer (SLL) to generate an attributed graph from the original feature data, serving as a target to enhance and optimize the original structural graph, thereby mitigating the issue of sparse connections between graph nodes. Finally, our clustering assignment method (ASS), based on GNNs, learns node embeddings and a soft assignment matrix to cluster on the enhanced graph. The ASS layer can be stacked to meet downstream task requirements, minimizing structural entropy for stable clustering and maximizing node consistency with edge-based cross-entropy loss. Extensive comparative experiments are conducted on four benchmark datasets against eight representative unsupervised graph clustering baselines, demonstrating the superiority of the DeSE in both effectiveness and interpretability.
In incomplete multi-view clustering (IMVC), missing data induce prototype shifts within views and semantic inconsistencies across views. A feasible solution is to explore cross-view consistency in paired complete observations, further imputing and aligning the similarity relationships inherently shared across views. Nevertheless, existing methods are constrained by two-tiered limitations: (1) Neither instance- nor cluster-level consistency learning construct a semantic space shared across views to learn consensus semantics. The former enforces cross-view instances alignment, and wrongly regards unpaired observations with semantic consistency as negative pairs; the latter focuses on cross-view cluster counterparts while coarsely handling fine-grained intra-cluster relationships within views. (2) Excessive reliance on consistency results in unreliable imputation and alignment without incorporating view-specific cluster information. Thus, we propose an IMVC framework, imputation- and alignment-free for consensus semantics learning (FreeCSL). To bridge semantic gaps across all observations, we learn consensus prototypes from available data to discover a shared space, where semantically similar observations are pulled closer for consensus semantics learning. To capture semantic relationships within specific views, we design a heuristic graph clustering based on modularity to recover cluster structure with intra-cluster compactness and inter-cluster separation for cluster semantics enhancement. Extensive experiments demonstrate, compared to state-of-the-art competitors, FreeCSL achieves more confident and robust assignments on IMVC task.
Graph Neural Networks (GNNs) have proven effective for learning from graph-structured data through their neighborhood-based message passing framework. Many hierarchical graph clustering pooling methods modify this framework by introducing clustering-based strategies, enabling the construction of more expressive and powerful models. However, all of these message passing framework heavily rely on the connectivity structure of graphs, limiting their ability to capture the rich geometric features inherent in geometric graphs. To address this, we propose Rhomboid Tiling (RT) clustering, a novel clustering method based on the rhomboid tiling structure, which performs clustering by leveraging the complex geometric information of the data and effectively extracts its higher-order geometric structures. Moreover, we design RTPool, a hierarchical graph clustering pooling model based on RT clustering for graph classification tasks. The proposed model demonstrates superior performance, outperforming 21 state-of-the-art competitors on all the 7 benchmark datasets.
We give new results for problems in computational and statistical machine learning using tools from high-dimensional geometry and probability. We break up our treatment into two parts. In Part I, we focus on computational considerations in optimization. Specifically, we give new algorithms for approximating convex polytopes in a stream, sparsification and robust least squares regression, and dueling optimization. In Part II, we give new statistical guarantees for data science problems. In particular, we formulate a new model in which we analyze statistical properties of backdoor data poisoning attacks, and we study the robustness of graph clustering algorithms to ``helpful'' misspecification.
Traditional 3D scene understanding techniques are generally predicated on hand-annotated label sets, but in recent years a new class of open-vocabulary 3D scene understanding techniques has emerged. Despite the success of this paradigm on small scenes, existing approaches cannot scale efficiently to city-scale 3D datasets. In this paper, we present Hierarchical vocab-Agnostic Expert Clustering (HAEC), after the latin word for 'these', a superpoint graph clustering based approach which utilizes a novel mixture of experts graph transformer for its backbone. We administer this highly scalable approach to the first application of open-vocabulary scene understanding on the SensatUrban city-scale dataset. We also demonstrate a synthetic labeling pipeline which is derived entirely from the raw point clouds with no hand-annotation. Our technique can help unlock complex operations on dense urban 3D scenes and open a new path forward in the processing of digital twins.
The indicator matrix plays an important role in machine learning, but optimizing it is an NP-hard problem. We propose a new relaxation of the indicator matrix and prove that this relaxation forms a manifold, which we call the Relaxed Indicator Matrix Manifold (RIM manifold). Based on Riemannian geometry, we develop a Riemannian toolbox for optimization on the RIM manifold. Specifically, we provide several methods of Retraction, including a fast Retraction method to obtain geodesics. We point out that the RIM manifold is a generalization of the double stochastic manifold, and it is much faster than existing methods on the double stochastic manifold, which has a complexity of \( \mathcal{O}(n^3) \), while RIM manifold optimization is \( \mathcal{O}(n) \) and often yields better results. We conducted extensive experiments, including image denoising, with millions of variables to support our conclusion, and applied the RIM manifold to Ratio Cut, we provide a rigorous convergence proof and achieve clustering results that outperform the state-of-the-art methods. Our Code in \href{https://github.com/Yuan-Jinghui/Riemannian-Optimization-on-Relaxed-Indicator-Matrix-Manifold}{here}.
Given a graph $G$ and a seed node $v_s$, the objective of local graph clustering (LGC) is to identify a subgraph $C_s \in G$ (a.k.a. local cluster) surrounding $v_s$ in time roughly linear with the size of $C_s$. This approach yields personalized clusters without needing to access the entire graph, which makes it highly suitable for numerous applications involving large graphs. However, most existing solutions merely rely on the topological connectivity between nodes in $G$, rendering them vulnerable to missing or noisy links that are commonly present in real-world graphs. To address this issue, this paper resorts to leveraging the complementary nature of graph topology and node attributes to enhance local clustering quality. To effectively exploit the attribute information, we first formulate the LGC as an estimation of the bidirectional diffusion distribution (BDD), which is specialized for capturing the multi-hop affinity between nodes in the presence of attributes. Furthermore, we propose LACA, an efficient and effective approach for LGC that achieves superb empirical performance on multiple real datasets while maintaining strong locality. The core components of LACA include (i) a fast and theoretically-grounded preprocessing technique for node attributes, (ii) an adaptive algorithm for diffusing any vectors over $G$ with rigorous theoretical guarantees and expedited convergence, and (iii) an effective three-step scheme for BDD approximation. Extensive experiments, comparing 17 competitors on 8 real datasets, show that LACA outperforms all competitors in terms of result quality measured against ground truth local clusters, while also being up to orders of magnitude faster. The code is available at https://github.com/HaoranZ99/alac.
Recently, 3D Gaussian Splatting (3DGS) has shown encouraging performance for open vocabulary scene understanding tasks. However, previous methods cannot distinguish 3D instance-level information, which usually predicts a heatmap between the scene feature and text query. In this paper, we propose PanoGS, a novel and effective 3D panoptic open vocabulary scene understanding approach. Technically, to learn accurate 3D language features that can scale to large indoor scenarios, we adopt the pyramid tri-plane to model the latent continuous parametric feature space and use a 3D feature decoder to regress the multi-view fused 2D feature cloud. Besides, we propose language-guided graph cuts that synergistically leverage reconstructed geometry and learned language cues to group 3D Gaussian primitives into a set of super-primitives. To obtain 3D consistent instance, we perform graph clustering based segmentation with SAM-guided edge affinity computation between different super-primitives. Extensive experiments on widely used datasets show better or more competitive performance on 3D panoptic open vocabulary scene understanding. Project page: \href{https://zju3dv.github.io/panogs}{https://zju3dv.github.io/panogs}.
Graph clustering aims to divide the graph into different clusters. The recently emerging deep graph clustering approaches are largely built on graph neural networks (GNN). However, GNN is designed for general graph encoding and there is a common issue of representation collapse in existing GNN-based deep graph clustering algorithms. We attribute two main reasons for such issues: (i) the inductive bias of GNN models: GNNs tend to generate similar representations for proximal nodes. Since graphs often contain a non-negligible amount of inter-cluster links, the bias results in error message passing and leads to biased clustering; (ii) the clustering guided loss function: most traditional approaches strive to make all samples closer to pre-learned cluster centers, which causes a degenerate solution assigning all data points to a single label thus make all samples and less discriminative. To address these challenges, we investigate graph clustering from a graph cut perspective and propose an innovative and non-GNN-based Deep Cut-informed Graph embedding and Clustering framework, namely DCGC. This framework includes two modules: (i) cut-informed graph encoding; (ii) self-supervised graph clustering via optimal transport. For the encoding module, we derive a cut-informed graph embedding objective to fuse graph structure and attributes by minimizing their joint normalized cut. For the clustering module, we utilize the optimal transport theory to obtain the clustering assignments, which can balance the guidance of "proximity to the pre-learned cluster center". With the above two tailored designs, DCGC is more suitable for the graph clustering task, which can effectively alleviate the problem of representation collapse and achieve better performance. We conduct extensive experiments to demonstrate that our method is simple but effective compared with benchmarks.
We present CluStRE, a novel streaming graph clustering algorithm that balances computational efficiency with high-quality clustering using multi-stage refinement. Unlike traditional in-memory clustering approaches, CluStRE processes graphs in a streaming setting, significantly reducing memory overhead while leveraging re-streaming and evolutionary heuristics to improve solution quality. Our method dynamically constructs a quotient graph, enabling modularity-based optimization while efficiently handling large-scale graphs. We introduce multiple configurations of CluStRE to provide trade-offs between speed, memory consumption, and clustering quality. Experimental evaluations demonstrate that CluStRE improves solution quality by 89.8%, operates 2.6 times faster, and uses less than two-thirds of the memory required by the state-of-the-art streaming clustering algorithm on average. Moreover, our strongest mode enhances solution quality by up to 150% on average. With this, CluStRE achieves comparable solution quality to in-memory algorithms, i.e. over 96% of the quality of clustering approaches, including Louvain, effectively bridging the gap between streaming and traditional clustering methods.
Self-supervised hyperspectral image (HSI) clustering remains a fundamental yet challenging task due to the absence of labeled data and the inherent complexity of spatial-spectral interactions. While recent advancements have explored innovative approaches, existing methods face critical limitations in clustering accuracy, feature discriminability, computational efficiency, and robustness to noise, hindering their practical deployment. In this paper, a self-supervised efficient low-pass contrastive graph clustering (SLCGC) is introduced for HSIs. Our approach begins with homogeneous region generation, which aggregates pixels into spectrally consistent regions to preserve local spatial-spectral coherence while drastically reducing graph complexity. We then construct a structural graph using an adjacency matrix A and introduce a low-pass graph denoising mechanism to suppress high-frequency noise in the graph topology, ensuring stable feature propagation. A dual-branch graph contrastive learning module is developed, where Gaussian noise perturbations generate augmented views through two multilayer perceptrons (MLPs), and a cross-view contrastive loss enforces structural consistency between views to learn noise-invariant representations. Finally, latent embeddings optimized by this process are clustered via K-means. Extensive experiments and repeated comparative analysis have verified that our SLCGC contains high clustering accuracy, low computational complexity, and strong robustness. The code source will be available at https://github.com/DY-HYX.
An approach to improve neural network interpretability is via clusterability, i.e., splitting a model into disjoint clusters that can be studied independently. We define a measure for clusterability and show that pre-trained models form highly enmeshed clusters via spectral graph clustering. We thus train models to be more modular using a ``clusterability loss'' function that encourages the formation of non-interacting clusters. Using automated interpretability techniques, we show that our method can help train models that are more modular and learn different, disjoint, and smaller circuits. We investigate CNNs trained on MNIST and CIFAR, small transformers trained on modular addition, and language models. Our approach provides a promising direction for training neural networks that learn simpler functions and are easier to interpret.
Graph clustering plays a crucial role in graph representation learning but often faces challenges in achieving feature-space diversity. While Deep Modularity Networks (DMoN) leverage modularity maximization and collapse regularization to ensure structural separation, they do not explicitly encourage diversity in the feature space among clusters. We address this limitation by proposing Deep Modularity Networks with Diversity-Preserving Regularization (DMoN-DPR), which introduces three novel regularization terms: distance-based for inter-cluster separation, variance-based for intra-cluster diversity, and entropy-based for balanced assignments. Our method enhances clustering performance on benchmark datasets, namely Cora, CiteSeer, PubMed, Coauthor CS, and Coauthor Physics, achieving significant improvements in Normalized Mutual Information (NMI), and F1 scores. These results demonstrate the effectiveness of incorporating diversity-preserving regularizations in creating meaningful and interpretable clusters, especially in feature-rich datasets.
Hyperspectral image (HSI) clustering has been a fundamental but challenging task with zero training labels. Currently, some deep graph clustering methods have been successfully explored for HSI due to their outstanding performance in effective spatial structural information encoding. Nevertheless, insufficient structural information utilization, poor feature presentation ability, and weak graph update capability limit their performance. Thus, in this paper, a homophily structure graph learning with an adaptive filter clustering method (AHSGC) for HSI is proposed. Specifically, homogeneous region generation is first developed for HSI processing and constructing the original graph. Afterward, an adaptive filter graph encoder is designed to adaptively capture the high and low frequency features on the graph for subsequence processing. Then, a graph embedding clustering self-training decoder is developed with KL Divergence, with which the pseudo-label is generated for network training. Meanwhile, homophily-enhanced structure learning is introduced to update the graph according to the clustering task, in which the orient correlation estimation is adopted to estimate the node connection, and graph edge sparsification is designed to adjust the edges in the graph dynamically. Finally, a joint network optimization is introduced to achieve network self-training and update the graph. The K-means is adopted to express the latent features. Extensive experiments and repeated comparative analysis have verified that our AHSGC contains high clustering accuracy, low computational complexity, and strong robustness. The code source will be available at https://github.com/DY-HYX.
Deep recommender systems rely heavily on large embedding tables to handle high-cardinality categorical features such as user/item identifiers, and face significant memory constraints at scale. To tackle this challenge, hashing techniques are often employed to map multiple entities to the same embedding and thus reduce the size of the embedding tables. Concurrently, graph-based collaborative signals have emerged as powerful tools in recommender systems, yet their potential for optimizing embedding table reduction remains unexplored. This paper introduces GraphHash, the first graph-based approach that leverages modularity-based bipartite graph clustering on user-item interaction graphs to reduce embedding table sizes. We demonstrate that the modularity objective has a theoretical connection to message-passing, which provides a foundation for our method. By employing fast clustering algorithms, GraphHash serves as a computationally efficient proxy for message-passing during preprocessing and a plug-and-play graph-based alternative to traditional ID hashing. Extensive experiments show that GraphHash substantially outperforms diverse hashing baselines on both retrieval and click-through-rate prediction tasks. In particular, GraphHash achieves on average a 101.52% improvement in recall when reducing the embedding table size by more than 75%, highlighting the value of graph-based collaborative information for model reduction. Our code is available at https://github.com/snap-research/GraphHash.
Clustering the nodes of a graph is a cornerstone of graph analysis and has been extensively studied. However, some popular methods are not suitable for very large graphs: e.g., spectral clustering requires the computation of the spectral decomposition of the Laplacian matrix, which is not applicable for large graphs with a large number of communities. This work introduces PASCO, an overlay that accelerates clustering algorithms. Our method consists of three steps: 1-We compute several independent small graphs representing the input graph by applying an efficient and structure-preserving coarsening algorithm. 2-A clustering algorithm is run in parallel onto each small graph and provides several partitions of the initial graph. 3-These partitions are aligned and combined with an optimal transport method to output the final partition. The PASCO framework is based on two key contributions: a novel global algorithm structure designed to enable parallelization and a fast, empirically validated graph coarsening algorithm that preserves structural properties. We demonstrate the strong performance of 1 PASCO in terms of computational efficiency, structural preservation, and output partition quality, evaluated on both synthetic and real-world graph datasets.
Graph propagation (GP) computation plays a crucial role in graph data analysis, supporting various applications such as graph node similarity queries, graph node ranking, graph clustering, and graph neural networks. Existing methods, mainly relying on power iteration or push computation frameworks, often face challenges with slow convergence rates when applied to large-scale graphs. To address this issue, we propose a novel and powerful approach that accelerates power iteration and push methods using Chebyshev polynomials. Specifically, we first present a novel Chebyshev expansion formula for general GP functions, offering a new perspective on GP computation and achieving accelerated convergence. Building on these theoretical insights, we develop a novel Chebyshev power iteration method (\ltwocheb) and a novel Chebyshev push method (\chebpush). Our \ltwocheb method demonstrates an approximate acceleration of $O(\sqrt{N})$ compared to existing power iteration techniques for both personalized PageRank and heat kernel PageRank computations, which are well-studied GP problems. For \chebpush, we propose an innovative subset Chebyshev recurrence technique, enabling the design of a push-style local algorithm with provable error guarantee and reduced time complexity compared to existing push methods. We conduct extensive experiments using 5 large real-world datasets to evaluate our proposed algorithms, demonstrating their superior efficiency compared to state-of-the-art approaches.
Graph node clustering is a fundamental unsupervised task. Existing methods typically train an encoder through selfsupervised learning and then apply K-means to the encoder output. Some methods use this clustering result directly as the final assignment, while others initialize centroids based on this initial clustering and then finetune both the encoder and these learnable centroids. However, due to their reliance on K-means, these methods inherit its drawbacks when the cluster separability of encoder output is low, facing challenges from the Uniform Effect and Cluster Assimilation. We summarize three reasons for the low cluster separability in existing methods: (1) lack of contextual information prevents discrimination between similar nodes from different clusters; (2) training tasks are not sufficiently aligned with the downstream clustering task; (3) the cluster information in the graph structure is not appropriately exploited. To address these issues, we propose conTrastive grapH clustEring by SwApping fUsed gRomov-wasserstein coUplingS (THESAURUS). Our method introduces semantic prototypes to provide contextual information, and employs a cross-view assignment prediction pretext task that aligns well with the downstream clustering task. Additionally, it utilizes Gromov-Wasserstein Optimal Transport (GW-OT) along with the proposed prototype graph to thoroughly exploit cluster information in the graph structure. To adapt to diverse real-world data, THESAURUS updates the prototype graph and the prototype marginal distribution in OT by using momentum. Extensive experiments demonstrate that THESAURUS achieves higher cluster separability than the prior art, effectively mitigating the Uniform Effect and Cluster Assimilation issues
Most existing graph clustering methods primarily focus on exploiting topological structure, often neglecting the ``missing-half" node feature information, especially how these features can enhance clustering performance. This issue is further compounded by the challenges associated with high-dimensional features. Feature selection in graph clustering is particularly difficult because it requires simultaneously discovering clusters and identifying the relevant features for these clusters. To address this gap, we introduce a novel paradigm called ``one node one model", which builds an exclusive model for each node and defines the node label as a combination of predictions for node groups. Specifically, the proposed ``Feature Personalized Graph Clustering (FPGC)" method identifies cluster-relevant features for each node using a squeeze-and-excitation block, integrating these features into each model to form the final representations. Additionally, the concept of feature cross is developed as a data augmentation technique to learn low-order feature interactions. Extensive experimental results demonstrate that FPGC outperforms state-of-the-art clustering methods. Moreover, the plug-and-play nature of our method provides a versatile solution to enhance GNN-based models from a feature perspective.