Document-level relation extraction (DocRE) is the process of identifying and extracting relations between entities that span multiple sentences within a document. Due to its realistic settings, DocRE has garnered increasing research attention in recent years. Previous research has mostly focused on developing sophisticated encoding models to better capture the intricate patterns between entity pairs. While these advancements are undoubtedly crucial, an even more foundational challenge lies in the data itself. The complexity inherent in DocRE makes the labeling process prone to errors, compounded by the extreme sparsity of positive relation samples, which is driven by both the limited availability of positive instances and the broad diversity of positive relation types. These factors can lead to biased optimization processes, further complicating the task of accurate relation extraction. Recognizing these challenges, we have developed a robust framework called \textit{\textbf{COMM}} to better solve DocRE. \textit{\textbf{COMM}} operates by initially employing an instance-aware reasoning method to dynamically capture pertinent information of entity pairs within the document and extract relational features. Following this, \textit{\textbf{COMM}} takes into account the distribution of relations and the difficulty of samples to dynamically adjust the margins between prediction logits and the decision threshold, a process we call Concentrated Margin Maximization. In this way, \textit{\textbf{COMM}} not only enhances the extraction of relevant relational features but also boosts DocRE performance by addressing the specific challenges posed by the data. Extensive experiments and analysis demonstrate the versatility and effectiveness of \textit{\textbf{COMM}}, especially its robustness when trained on low-quality data (achieves \textgreater 10\% performance gains).
Biological relation networks contain rich information for understanding the biological mechanisms behind the relationship of entities such as genes, proteins, diseases, and chemicals. The vast growth of biomedical literature poses significant challenges updating the network knowledge. The recent Biomedical Relation Extraction Dataset (BioRED) provides valuable manual annotations, facilitating the develop-ment of machine-learning and pre-trained language model approaches for automatically identifying novel document-level (inter-sentence context) relationships. Nonetheless, its annotations lack directionality (subject/object) for the entity roles, essential for studying complex biological networks. Herein we annotate the entity roles of the relationships in the BioRED corpus and subsequently propose a novel multi-task language model with soft-prompt learning to jointly identify the relationship, novel findings, and entity roles. Our results in-clude an enriched BioRED corpus with 10,864 directionality annotations. Moreover, our proposed method outperforms existing large language models such as the state-of-the-art GPT-4 and Llama-3 on two benchmarking tasks. Our source code and dataset are available at https://github.com/ncbi-nlp/BioREDirect.
Document-level relation extraction (Doc-RE) aims to extract relations between entities across multiple sentences. Therefore, Doc-RE requires more comprehensive reasoning abilities like humans, involving complex cross-sentence interactions between entities, contexts, and external general knowledge, compared to the sentence-level RE. However, most existing Doc-RE methods focus on optimizing single reasoning ability, but lack the ability to utilize external knowledge for comprehensive reasoning on long documents. To solve these problems, a knowledge retrieval augmented method, named KnowRA, was proposed with comprehensive reasoning to autonomously determine whether to accept external knowledge to assist DocRE. Firstly, we constructed a document graph for semantic encoding and integrated the co-reference resolution model to augment the co-reference reasoning ability. Then, we expanded the document graph into a document knowledge graph by retrieving the external knowledge base for common-sense reasoning and a novel knowledge filtration method was presented to filter out irrelevant knowledge. Finally, we proposed the axis attention mechanism to build direct and indirect associations with intermediary entities for achieving cross-sentence logical reasoning. Extensive experiments conducted on two datasets verified the effectiveness of our method compared to the state-of-the-art baselines. Our code is available at https://anonymous.4open.science/r/KnowRA.
Document-level Relation Extraction (DocRE) aims to identify relationships between entity pairs within a document. However, most existing methods assume a uniform label distribution, resulting in suboptimal performance on real-world, imbalanced datasets. To tackle this challenge, we propose a novel data augmentation approach using generative models to enhance data from the embedding space. Our method leverages the Variational Autoencoder (VAE) architecture to capture all relation-wise distributions formed by entity pair representations and augment data for underrepresented relations. To better capture the multi-label nature of DocRE, we parameterize the VAE's latent space with a Diffusion Model. Additionally, we introduce a hierarchical training framework to integrate the proposed VAE-based augmentation module into DocRE systems. Experiments on two benchmark datasets demonstrate that our method outperforms state-of-the-art models, effectively addressing the long-tail distribution problem in DocRE.
Large language models (LLMs) pre-trained on massive corpora have demonstrated impressive few-shot learning capability on many NLP tasks. Recasting an NLP task into a text-to-text generation task is a common practice so that generative LLMs can be prompted to resolve it. However, performing document-level relation extraction (DocRE) tasks with generative LLM models is still challenging due to the structured output format of DocRE, which complicates the conversion to plain text. Limited information available in few-shot samples and prompt instructions induce further difficulties and challenges in relation extraction for mentioned entities in a document. In this paper, we represent the structured output as a graph-style triplet rather than natural language expressions and leverage generative LLMs for the DocRE task. Our approach, the Graph-DPEP framework is grounded in the reasoning behind triplet explanation thoughts presented in natural language. In this framework, we first introduce a ``decomposed-plug" method for performing the generation from LLMs over prompts with type-space decomposition to alleviate the burden of distinguishing all relation types. Second, we employ a verifier for calibrating the generation and identifying overlooked query entity pairs. Third, we develop "ensemble-play", reapplying generation on the entire type list by leveraging the reasoning thoughts embedded in a sub-graph associated with the missing query pair to address the missingness issue. Through extensive comparisons with existing prompt techniques and alternative Language Models (LLMs), our framework demonstrates superior performance on publicly available benchmarks in experiments.
Few-shot document-level relation extraction suffers from poor performance due to the challenging cross-domain transferability of NOTA (none-of-the-above) relation representation. In this paper, we introduce a Transferable Proto-Learning Network (TPN) to address the challenging issue. It comprises three core components: Hybrid Encoder hierarchically encodes semantic content of input text combined with attention information to enhance the relation representations. As a plug-and-play module for Out-of-Domain (OOD) Detection, Transferable Proto-Learner computes NOTA prototype through an adaptive learnable block, effectively mitigating NOTA bias across various domains. Dynamic Weighting Calibrator detects relation-specific classification confidence, serving as dynamic weights to calibrate the NOTA-dominant loss function. Finally, to bolster the model's cross-domain performance, we complement it with virtual adversarial training (VAT). We conduct extensive experimental analyses on FREDo and ReFREDo, demonstrating the superiority of TPN. Compared to state-of-the-art methods, our approach achieves competitive performance with approximately half the parameter size. Data and code are available at https://github.com/EchoDreamer/TPN.
The remarkable capabilities of Large Language Models (LLMs) in text comprehension and generation have revolutionized Information Extraction (IE). One such advancement is in Document-level Relation Triplet Extraction (DocRTE), a critical task in information systems that aims to extract entities and their semantic relationships from documents. However, existing methods are primarily designed for Sentence level Relation Triplet Extraction (SentRTE), which typically handles a limited set of relations and triplet facts within a single sentence. Additionally, some approaches treat relations as candidate choices integrated into prompt templates, resulting in inefficient processing and suboptimal performance when determining the relation elements in triplets. To address these limitations, we introduce a Discriminative and Voice Aware Paradigm DiVA. DiVA involves only two steps: performing document-level relation extraction (DocRE) and then identifying the subject object entities based on the relation. No additional processing is required simply input the document to directly obtain the triplets. This streamlined process more accurately reflects real-world scenarios for triplet extraction. Our innovation lies in transforming DocRE into a discriminative task, where the model pays attention to each relation and to the often overlooked issue of active vs. passive voice within the triplet. Our experiments on the Re-DocRED and DocRED datasets demonstrate state-of-the-art results for the DocRTE task.
Large language models (LLMs) have created a new paradigm for natural language processing. Despite their advancement, LLM-based methods still lag behind traditional approaches in document-level relation extraction (DocRE), a critical task for understanding complex entity relations within long context. This paper investigates the causes of this performance gap, identifying the dispersion of attention by LLMs due to entity pairs without relations as a key factor. We then introduce a novel classifier-LLM approach to DocRE. Particularly, the proposed approach begins with a classifier designed to select entity pair candidates that exhibit potential relations and then feed them to LLM for final relation classification. This method ensures that the LLM's attention is directed at relation-expressing entity pairs instead of those without relations during inference. Experiments on DocRE benchmarks reveal that our method significantly outperforms recent LLM-based DocRE models and narrows the performance gap with state-of-the-art BERT-based models.
Document-level relation extraction (DocRE) aims to extract relations between entities from unstructured document text. Compared to sentence-level relation extraction, it requires more complex semantic understanding from a broader text context. Currently, some studies are utilizing logical rules within evidence sentences to enhance the performance of DocRE. However, in the data without provided evidence sentences, researchers often obtain a list of evidence sentences for the entire document through evidence retrieval (ER). Therefore, DocRE suffers from two challenges: firstly, the relevance between evidence and entity pairs is weak; secondly, there is insufficient extraction of complex cross-relations between long-distance multi-entities. To overcome these challenges, we propose GEGA, a novel model for DocRE. The model leverages graph neural networks to construct multiple weight matrices, guiding attention allocation to evidence sentences. It also employs multi-scale representation aggregation to enhance ER. Subsequently, we integrate the most efficient evidence information to implement both fully supervised and weakly supervised training processes for the model. We evaluate the GEGA model on three widely used benchmark datasets: DocRED, Re-DocRED, and Revisit-DocRED. The experimental results indicate that our model has achieved comprehensive improvements compared to the existing SOTA model.
Many datasets have been developed to train and evaluate document-level relation extraction (RE) models. Most of these are constructed using real-world data. It has been shown that RE models trained on real-world data suffer from factual biases. To evaluate and address this issue, we present CovEReD, a counterfactual data generation approach for document-level relation extraction datasets using entity replacement. We first demonstrate that models trained on factual data exhibit inconsistent behavior: while they accurately extract triples from factual data, they fail to extract the same triples after counterfactual modification. This inconsistency suggests that models trained on factual data rely on spurious signals such as specific entities and external knowledge $\unicode{x2013}$ rather than on the input context $\unicode{x2013}$ to extract triples. We show that by generating document-level counterfactual data with CovEReD and training models on them, consistency is maintained with minimal impact on RE performance. We release our CovEReD pipeline as well as Re-DocRED-CF, a dataset of counterfactual RE documents, to assist in evaluating and addressing inconsistency in document-level RE.
Since LLMs emerged, more attention has been paid to abstractive long-form summarization, where longer input sequences indicate more information contained. Nevertheless, the automatic evaluation of such summaries remains underexplored. The current evaluation metrics for long-form summarization either use similarity-based metrics like ROUGE and BERTScore or LLM-based metrics using appropriate prompts or pre-defined schema. We argue that the former only relies on similarity and fails to consider informativeness while the latter lacks quantitative analysis of informative richness, and is rather subjective and hard to explain. Current evaluation metrics either use traditional metrics like ROUGE and BERTScore, which rely on surface-level similarity and fail to consider informativeness, or simple LLM-based metrics, which are not robust and easily overwhelmed by the long contexts. In this paper, we propose a new evaluation metric called EVA-Score to extract all information from the given summaries, identify overlapped information based on reference, and calculate the information score. We test EVA-Score on several datasets and the experimental results reveal that EVA-Score shows the highest correlation with humans. We also re-evaluate the performance of LLMs on long-form summarization from the information perspective. The results indicate that responses of LLMs still have a gap with the human-written answers. Moreover, we provide a detailed analysis of the effectiveness of EVA-Score, forecasting future ways to automatically evaluate abstractive long-form summarization.
Despite its popularity in sentence-level relation extraction, distantly supervised data is rarely utilized by existing work in document-level relation extraction due to its noisy nature and low information density. Among its current applications, distantly supervised data is mostly used as a whole for pertaining, which is of low time efficiency. To fill in the gap of efficient and robust utilization of distantly supervised training data, we propose Efficient Multi-Supervision for document-level relation extraction, in which we first select a subset of informative documents from the massive dataset by combining distant supervision with expert supervision, then train the model with Multi-Supervision Ranking Loss that integrates the knowledge from multiple sources of supervision to alleviate the effects of noise. The experiments demonstrate the effectiveness of our method in improving the model performance with higher time efficiency than existing baselines.
Traditional supervised learning heavily relies on human-annotated datasets, especially in data-hungry neural approaches. However, various tasks, especially multi-label tasks like document-level relation extraction, pose challenges in fully manual annotation due to the specific domain knowledge and large class sets. Therefore, we address the multi-label positive-unlabelled learning (MLPUL) problem, where only a subset of positive classes is annotated. We propose Mixture Learner for Partially Annotated Classification (MLPAC), an RL-based framework combining the exploration ability of reinforcement learning and the exploitation ability of supervised learning. Experimental results across various tasks, including document-level relation extraction, multi-label image classification, and binary PU learning, demonstrate the generalization and effectiveness of our framework.
Driven by the demand for cross-sentence and large-scale relation extraction, document-level relation extraction (DocRE) has attracted increasing research interest. Despite the continuous improvement in performance, we find that existing DocRE models which initially perform well may make more mistakes when merely changing the entity names in the document, hindering the generalization to novel entity names. To this end, we systematically investigate the robustness of DocRE models to entity name variations in this work. We first propose a principled pipeline to generate entity-renamed documents by replacing the original entity names with names from Wikidata. By applying the pipeline to DocRED and Re-DocRED datasets, we construct two novel benchmarks named Env-DocRED and Env-Re-DocRED for robustness evaluation. Experimental results show that both three representative DocRE models and two in-context learned large language models consistently lack sufficient robustness to entity name variations, particularly on cross-sentence relation instances and documents with more entities. Finally, we propose an entity variation robust training method which not only improves the robustness of DocRE models but also enhances their understanding and reasoning capabilities. We further verify that the basic idea of this method can be effectively transferred to in-context learning for DocRE as well.
Document-level relation extraction aims to categorize the association between any two entities within a document. We find that previous methods for document-level relation extraction are ineffective in exploiting the full potential of large amounts of training data with varied noise levels. For example, in the ReDocRED benchmark dataset, state-of-the-art methods trained on the large-scale, lower-quality, distantly supervised training data generally do not perform better than those trained solely on the smaller, high-quality, human-annotated training data. To unlock the full potential of large-scale noisy training data for document-level relation extraction, we propose TTM-RE, a novel approach that integrates a trainable memory module, known as the Token Turing Machine, with a noisy-robust loss function that accounts for the positive-unlabeled setting. Extensive experiments on ReDocRED, a benchmark dataset for document-level relation extraction, reveal that TTM-RE achieves state-of-the-art performance (with an absolute F1 score improvement of over 3%). Ablation studies further illustrate the superiority of TTM-RE in other domains (the ChemDisGene dataset in the biomedical domain) and under highly unlabeled settings.
Document-level Relation Extraction (DocRE) is the task of extracting all semantic relationships from a document. While studies have been conducted on English DocRE, limited attention has been given to DocRE in non-English languages. This work delves into effectively utilizing existing English resources to promote DocRE studies in non-English languages, with Japanese as the representative case. As an initial attempt, we construct a dataset by transferring an English dataset to Japanese. However, models trained on such a dataset suffer from low recalls. We investigate the error cases and attribute the failure to different surface structures and semantics of documents translated from English and those written by native speakers. We thus switch to explore if the transferred dataset can assist human annotation on Japanese documents. In our proposal, annotators edit relation predictions from a model trained on the transferred dataset. Quantitative analysis shows that relation recommendations suggested by the model help reduce approximately 50% of the human edit steps compared with the previous approach. Experiments quantify the performance of existing DocRE models on our collected dataset, portraying the challenges of Japanese and cross-lingual DocRE.
Extracting structured information from unstructured text is critical for many downstream NLP applications and is traditionally achieved by closed information extraction (cIE). However, existing approaches for cIE suffer from two limitations: (i) they are often pipelines which makes them prone to error propagation, and/or (ii) they are restricted to sentence level which prevents them from capturing long-range dependencies and results in expensive inference time. We address these limitations by proposing REXEL, a highly efficient and accurate model for the joint task of document level cIE (DocIE). REXEL performs mention detection, entity typing, entity disambiguation, coreference resolution and document-level relation classification in a single forward pass to yield facts fully linked to a reference knowledge graph. It is on average 11 times faster than competitive existing approaches in a similar setting and performs competitively both when optimised for any of the individual subtasks and a variety of combinations of different joint tasks, surpassing the baselines by an average of more than 6 F1 points. The combination of speed and accuracy makes REXEL an accurate cost-efficient system for extracting structured information at web-scale. We also release an extension of the DocRED dataset to enable benchmarking of future work on DocIE, which is available at https://github.com/amazon-science/e2e-docie.
Large Language Models (LLMs) have demonstrated exceptional abilities in comprehending and generating text, motivating numerous researchers to utilize them for Information Extraction (IE) purposes, including Relation Extraction (RE). Nonetheless, most existing methods are predominantly designed for Sentence-level Relation Extraction (SentRE) tasks, which typically encompass a restricted set of relations and triplet facts within a single sentence. Furthermore, certain approaches resort to treating relations as candidate choices integrated into prompt templates, leading to inefficient processing and suboptimal performance when tackling Document-Level Relation Extraction (DocRE) tasks, which entail handling multiple relations and triplet facts distributed across a given document, posing distinct challenges. To overcome these limitations, we introduce AutoRE, an end-to-end DocRE model that adopts a novel RE extraction paradigm named RHF (Relation-Head-Facts). Unlike existing approaches, AutoRE does not rely on the assumption of known relation options, making it more reflective of real-world scenarios. Additionally, we have developed an easily extensible RE framework using a Parameters Efficient Fine Tuning (PEFT) algorithm (QLoRA). Our experiments on the RE-DocRED dataset showcase AutoRE's best performance, achieving state-of-the-art results, surpassing TAG by 10.03\% and 9.03\% respectively on the dev and test set. The code is available at https://github.com/THUDM/AutoRE and the demonstration video is provided at https://www.youtube.com/watch?v=IhKRsZUAxKk.
Document-level Relation Extraction (DocRE) aims to identify relation labels between entities within a single document. It requires handling several sentences and reasoning over them. State-of-the-art DocRE methods use a graph structure to connect entities across the document to capture dependency syntax information. However, this is insufficient to fully exploit the rich syntax information in the document. In this work, we propose to fuse constituency and dependency syntax into DocRE. It uses constituency syntax to aggregate the whole sentence information and select the instructive sentences for the pairs of targets. It exploits the dependency syntax in a graph structure with constituency syntax enhancement and chooses the path between entity pairs based on the dependency graph. The experimental results on datasets from various domains demonstrate the effectiveness of the proposed method. The code is publicly available at this url.
This paper investigates the use of large language models (LLMs) for extracting sample lists of polymer nanocomposites (PNCs) from full-length materials science research papers. The challenge lies in the complex nature of PNC samples, which have numerous attributes scattered throughout the text. The complexity of annotating detailed information on PNCs limits the availability of data, making conventional document-level relation extraction techniques impractical due to the challenge in creating comprehensive named entity span annotations. To address this, we introduce a new benchmark and an evaluation technique for this task and explore different prompting strategies in a zero-shot manner. We also incorporate self-consistency to improve the performance. Our findings show that even advanced LLMs struggle to extract all of the samples from an article. Finally, we analyze the errors encountered in this process, categorizing them into three main challenges, and discuss potential strategies for future research to overcome them.