This paper introduces a novel training framework called Focused Discriminative Training (FDT) to further improve streaming word-piece end-to-end (E2E) automatic speech recognition (ASR) models trained using either CTC or an interpolation of CTC and attention-based encoder-decoder (AED) loss. The proposed approach presents a novel framework to identify and improve a model's recognition on challenging segments of an audio. Notably, this training framework is independent of hidden Markov models (HMMs) and lattices, eliminating the need for substantial decision-making regarding HMM topology, lexicon, and graph generation, as typically required in standard discriminative training approaches. Compared to additional fine-tuning with MMI or MWER loss on the encoder, FDT is shown to be more effective in achieving greater reductions in Word Error Rate (WER) on streaming models trained on LibriSpeech. Additionally, this method is shown to be effective in further improving a converged word-piece streaming E2E model trained on 600k hours of assistant and dictation dataset.
Recent advancements in computational chemistry have increasingly focused on synthesizing molecules based on textual instructions. Integrating graph generation with these instructions is complex, leading most current methods to use molecular sequences with pre-trained large language models. In response to this challenge, we propose a novel framework, named $\textbf{UTGDiff (Unified Text-Graph Diffusion Model)}$, which utilizes language models for discrete graph diffusion to generate molecular graphs from instructions. UTGDiff features a unified text-graph transformer as the denoising network, derived from pre-trained language models and minimally modified to process graph data through attention bias. Our experimental results demonstrate that UTGDiff consistently outperforms sequence-based baselines in tasks involving instruction-based molecule generation and editing, achieving superior performance with fewer parameters given an equivalent level of pretraining corpus. Our code is availble at https://github.com/ran1812/UTGDiff.
Visual relationship understanding has been studied separately in human-object interaction(HOI) detection, scene graph generation(SGG), and referring relationships(RR) tasks. Given the complexity and interconnectedness of these tasks, it is crucial to have a flexible framework that can effectively address these tasks in a cohesive manner. In this work, we propose FleVRS, a single model that seamlessly integrates the above three aspects in standard and promptable visual relationship segmentation, and further possesses the capability for open-vocabulary segmentation to adapt to novel scenarios. FleVRS leverages the synergy between text and image modalities, to ground various types of relationships from images and use textual features from vision-language models to visual conceptual understanding. Empirical validation across various datasets demonstrates that our framework outperforms existing models in standard, promptable, and open-vocabulary tasks, e.g., +1.9 $mAP$ on HICO-DET, +11.4 $Acc$ on VRD, +4.7 $mAP$ on unseen HICO-DET. Our FleVRS represents a significant step towards a more intuitive, comprehensive, and scalable understanding of visual relationships.
While large language models learn sound statistical representations of the language and information therein, ontologies are symbolic knowledge representations that can complement the former ideally. Research at this critical intersection relies on datasets that intertwine ontologies and text corpora to enable training and comprehensive benchmarking of neurosymbolic models. We present the MaterioMiner dataset and the linked materials mechanics ontology where ontological concepts from the mechanics of materials domain are associated with textual entities within the literature corpus. Another distinctive feature of the dataset is its eminently fine-granular annotation. Specifically, 179 distinct classes are manually annotated by three raters within four publications, amounting to a total of 2191 entities that were annotated and curated. Conceptual work is presented for the symbolic representation of causal composition-process-microstructure-property relationships. We explore the annotation consistency between the three raters and perform fine-tuning of pre-trained models to showcase the feasibility of named-entity recognition model training. Reusing the dataset can foster training and benchmarking of materials language models, automated ontology construction, and knowledge graph generation from textual data.
As the complexity of modern systems increases, so does the importance of assessing their security posture through effective vulnerability management and threat modeling techniques. One powerful tool in the arsenal of cybersecurity professionals is the attack graph, a representation of all potential attack paths within a system that an adversary might exploit to achieve a certain objective. Traditional methods of generating attack graphs involve expert knowledge, manual curation, and computational algorithms that might not cover the entire threat landscape due to the ever-evolving nature of vulnerabilities and exploits. This paper explores the approach of leveraging large language models (LLMs), such as ChatGPT, to automate the generation of attack graphs by intelligently chaining Common Vulnerabilities and Exposures (CVEs) based on their preconditions and effects. It also shows how to utilize LLMs to create attack graphs from threat reports.
Graph generation addresses the problem of generating new graphs that have a data distribution similar to real-world graphs. While previous diffusion-based graph generation methods have shown promising results, they often struggle to scale to large graphs. In this work, we propose ARROW-Diff (AutoRegressive RandOm Walk Diffusion), a novel random walk-based diffusion approach for efficient large-scale graph generation. Our method encompasses two components in an iterative process of random walk sampling and graph pruning. We demonstrate that ARROW-Diff can scale to large graphs efficiently, surpassing other baseline methods in terms of both generation time and multiple graph statistics, reflecting the high quality of the generated graphs.
Alzheimer's Disease (AD) is a currently incurable neurodegeneartive disease. Accurately detecting AD, especially in the early stage, represents a high research priority. AD is characterized by progressive cognitive impairments that are related to alterations in brain functional connectivity (FC). Based on this association, many studies have been published over the decades using FC and machine learning to differentiate AD from healthy aging. The most recent development in this detection method highlights the use of graph neural network (GNN) as the brain functionality analysis. In this paper, we proposed a stack of spatio-temporal feature extraction and graph generation based AD classification model using resting state fMRI. The proposed multi-level generated connectome (MLC) based graph convolutional network (GCN) (MLC-GCN) contains a multi-graph generation block and a GCN prediction block. The multi-graph generation block consists of a hierarchy of spatio-temporal feature extraction layers for extracting spatio-temporal rsfMRI features at different depths and building the corresponding connectomes. The GCN prediction block takes the learned multi-level connectomes to build and optimize GCNs at each level and concatenates the learned graphical features as the final predicting features for AD classification. Through independent cohort validations, MLC-GCN shows better performance for differentiating MCI, AD, and normal aging than state-of-art GCN and rsfMRI based AD classifiers. The proposed MLC-GCN also showed high explainability in terms of learning clinically reasonable connectome node and connectivity features from two independent datasets. While we only tested MLC-GCN on AD, the basic rsfMRI-based multi-level learned GCN based outcome prediction strategy is valid for other diseases or clinical outcomes.
Patients with Intracranial Hemorrhage (ICH) face a potentially life-threatening condition, and patient-centered individualized treatment remains challenging due to possible clinical complications. Deep-Learning-based methods can efficiently analyze the routinely acquired head CTs to support the clinical decision-making. The majority of early work focuses on the detection and segmentation of ICH, but do not model the complex relations between ICH and adjacent brain structures. In this work, we design a tailored object detection method for ICH, which we unite with segmentation-grounded Scene Graph Generation (SGG) methods to learn a holistic representation of the clinical cerebral scene. To the best of our knowledge, this is the first application of SGG for 3D voxel images. We evaluate our method on two head-CT datasets and demonstrate that our model can recall up to 74% of clinically relevant relations. This work lays the foundation towards SGG for 3D voxel data. The generated Scene Graphs can already provide insights for the clinician, but are also valuable for all downstream tasks as a compact and interpretable representation.
Scene Graph Generation (SGG) aims to explore the relationships between objects in images and obtain scene summary graphs, thereby better serving downstream tasks. However, the long-tailed problem has adversely affected the scene graph's quality. The predictions are dominated by coarse-grained relationships, lacking more informative fine-grained ones. The union region of one object pair (i.e., one sample) contains rich and dedicated contextual information, enabling the prediction of the sample-specific bias for refining the original relationship prediction. Therefore, we propose a novel Sample-Level Bias Prediction (SBP) method for fine-grained SGG (SBG). Firstly, we train a classic SGG model and construct a correction bias set by calculating the margin between the ground truth label and the predicted label with one classic SGG model. Then, we devise a Bias-Oriented Generative Adversarial Network (BGAN) that learns to predict the constructed correction biases, which can be utilized to correct the original predictions from coarse-grained relationships to fine-grained ones. The extensive experimental results on VG, GQA, and VG-1800 datasets demonstrate that our SBG outperforms the state-of-the-art methods in terms of Average@K across three mainstream SGG models: Motif, VCtree, and Transformer. Compared to dataset-level correction methods on VG, SBG shows a significant average improvement of 5.6%, 3.9%, and 3.2% on Average@K for tasks PredCls, SGCls, and SGDet, respectively. The code will be available at https://github.com/Zhuzi24/SBG.
Graph-based holistic scene representations facilitate surgical workflow understanding and have recently demonstrated significant success. However, this task is often hindered by the limited availability of densely annotated surgical scene data. In this work, we introduce an end-to-end framework for the generation and optimization of surgical scene graphs on a downstream task. Our approach leverages the flexibility of graph-based spectral clustering and the generalization capability of foundation models to generate unsupervised scene graphs with learnable properties. We reinforce the initial spatial graph with sparse temporal connections using local matches between consecutive frames to predict temporally consistent clusters across a temporal neighborhood. By jointly optimizing the spatiotemporal relations and node features of the dynamic scene graph with the downstream task of phase segmentation, we address the costly and annotation-burdensome task of semantic scene comprehension and scene graph generation in surgical videos using only weak surgical phase labels. Further, by incorporating effective intermediate scene representation disentanglement steps within the pipeline, our solution outperforms the SOTA on the CATARACTS dataset by 8% accuracy and 10% F1 score in surgical workflow recognition
In the realm of electronic and electrical engineering, automation of analog circuit is increasingly vital given the complexity and customized requirements of modern applications. However, existing methods only develop search-based algorithms that require many simulation iterations to design a custom circuit topology, which is usually a time-consuming process. To this end, we introduce LaMAGIC, a pioneering language model-based topology generation model that leverages supervised finetuning for automated analog circuit design. LaMAGIC can efficiently generate an optimized circuit design from the custom specification in a single pass. Our approach involves a meticulous development and analysis of various input and output formulations for circuit. These formulations can ensure canonical representations of circuits and align with the autoregressive nature of LMs to effectively addressing the challenges of representing analog circuits as graphs. The experimental results show that LaMAGIC achieves a success rate of up to 96\% under a strict tolerance of 0.01. We also examine the scalability and adaptability of LaMAGIC, specifically testing its performance on more complex circuits. Our findings reveal the enhanced effectiveness of our adjacency matrix-based circuit formulation with floating-point input, suggesting its suitability for handling intricate circuit designs. This research not only demonstrates the potential of language models in graph generation, but also builds a foundational framework for future explorations in automated analog circuit design.
Scene Graph Generation (SGG) remains a challenging task due to its compositional property. Previous approaches improve prediction efficiency through end-to-end learning. However, these methods exhibit limited performance as they assume unidirectional conditioning between entities and predicates, which restricts effective information interaction. To address this limitation, we propose a novel bidirectional conditioning factorization in a semantic-aligned space for SGG, enabling efficient and generalizable interaction between entities and predicates. Specifically, we introduce an end-to-end scene graph generation model, the Bidirectional Conditioning Transformer (BCTR), to implement this factorization. BCTR consists of two key modules. First, the Bidirectional Conditioning Generator (BCG) performs multi-stage interactive feature augmentation between entities and predicates, enabling mutual enhancement between these predictions. Second, Random Feature Alignment (RFA) is present to regularize feature space by distilling multi-modal knowledge from pre-trained models. Within this regularized feature space, BCG is feasible to capture interaction patterns across diverse relationships during training, and the learned interaction patterns can generalize to unseen but semantically related relationships during inference. Extensive experiments on Visual Genome and Open Image V6 show that BCTR achieves state-of-the-art performance on both benchmarks.
The scene graph generation (SGG) task involves detecting objects within an image and predicting predicates that represent the relationships between the objects. However, in SGG benchmark datasets, each subject-object pair is annotated with a single predicate even though a single predicate may exhibit diverse semantics (i.e., semantic diversity), existing SGG models are trained to predict the one and only predicate for each pair. This in turn results in the SGG models to overlook the semantic diversity that may exist in a predicate, thus leading to biased predictions. In this paper, we propose a novel model-agnostic Semantic Diversity-aware Prototype-based Learning (DPL) framework that enables unbiased predictions based on the understanding of the semantic diversity of predicates. Specifically, DPL learns the regions in the semantic space covered by each predicate to distinguish among the various different semantics that a single predicate can represent. Extensive experiments demonstrate that our proposed model-agnostic DPL framework brings significant performance improvement on existing SGG models, and also effectively understands the semantic diversity of predicates.
Panoptic Scene Graph Generation (PSG) aims to segment objects and recognize their relations, enabling the structured understanding of an image. Previous methods focus on predicting predefined object and relation categories, hence limiting their applications in the open world scenarios. With the rapid development of large multimodal models (LMMs), significant progress has been made in open-set object detection and segmentation, yet open-set relation prediction in PSG remains unexplored. In this paper, we focus on the task of open-set relation prediction integrated with a pretrained open-set panoptic segmentation model to achieve true open-set panoptic scene graph generation (OpenPSG). Our OpenPSG leverages LMMs to achieve open-set relation prediction in an autoregressive manner. We introduce a relation query transformer to efficiently extract visual features of object pairs and estimate the existence of relations between them. The latter can enhance the prediction efficiency by filtering irrelevant pairs. Finally, we design the generation and judgement instructions to perform open-set relation prediction in PSG autoregressively. To our knowledge, we are the first to propose the open-set PSG task. Extensive experiments demonstrate that our method achieves state-of-the-art performance in open-set relation prediction and panoptic scene graph generation. Code is available at \url{https://github.com/franciszzj/OpenPSG}.
Generating novel molecules is challenging, with most representations leading to generative models producing many invalid molecules. Spanning Tree-based Graph Generation (STGG) is a promising approach to ensure the generation of valid molecules, outperforming state-of-the-art SMILES and graph diffusion models for unconditional generation. In the real world, we want to be able to generate molecules conditional on one or multiple desired properties rather than unconditionally. Thus, in this work, we extend STGG to multi-property-conditional generation. Our approach, STGG+, incorporates a modern Transformer architecture, random masking of properties during training (enabling conditioning on any subset of properties and classifier-free guidance), an auxiliary property-prediction loss (allowing the model to self-criticize molecules and select the best ones), and other improvements. We show that STGG+ achieves state-of-the-art performance on in-distribution and out-of-distribution conditional generation, and reward maximization.
In panoptic scene graph generation (PSGG), models retrieve interactions between objects in an image which are grounded by panoptic segmentation masks. Previous evaluations on panoptic scene graphs have been subject to an erroneous evaluation protocol where multiple masks for the same object can lead to multiple relation distributions per mask-mask pair. This can be exploited to increase the final score. We correct this flaw and provide a fair ranking over a wide range of existing PSGG models. The observed scores for existing methods increase by up to 7.4 mR@50 for all two-stage methods, while dropping by up to 19.3 mR@50 for all one-stage methods, highlighting the importance of a correct evaluation. Contrary to recent publications, we show that existing two-stage methods are competitive to one-stage methods. Building on this, we introduce the Decoupled SceneFormer (DSFormer), a novel two-stage model that outperforms all existing scene graph models by a large margin of +11 mR@50 and +10 mNgR@50 on the corrected evaluation, thus setting a new SOTA. As a core design principle, DSFormer encodes subject and object masks directly into feature space.
Panoptic Scene Graph Generation (PSG) aims to generate a comprehensive graph-structure representation based on panoptic segmentation masks. Despite remarkable progress in PSG, almost all existing methods neglect the importance of shape-aware features, which inherently focus on the contours and boundaries of objects. To bridge this gap, we propose a model-agnostic Curricular shApe-aware FEature (CAFE) learning strategy for PSG. Specifically, we incorporate shape-aware features (i.e., mask features and boundary features) into PSG, moving beyond reliance solely on bbox features. Furthermore, drawing inspiration from human cognition, we propose to integrate shape-aware features in an easy-to-hard manner. To achieve this, we categorize the predicates into three groups based on cognition learning difficulty and correspondingly divide the training process into three stages. Each stage utilizes a specialized relation classifier to distinguish specific groups of predicates. As the learning difficulty of predicates increases, these classifiers are equipped with features of ascending complexity. We also incorporate knowledge distillation to retain knowledge acquired in earlier stages. Due to its model-agnostic nature, CAFE can be seamlessly incorporated into any PSG model. Extensive experiments and ablations on two PSG tasks under both robust and zero-shot PSG have attested to the superiority and robustness of our proposed CAFE, which outperforms existing state-of-the-art methods by a large margin.
Blood vessel networks, represented as 3D graphs, help predict disease biomarkers, simulate blood flow, and aid in synthetic image generation, relevant in both clinical and pre-clinical settings. However, generating realistic vessel graphs that correspond to an anatomy of interest is challenging. Previous methods aimed at generating vessel trees mostly in an autoregressive style and could not be applied to vessel graphs with cycles such as capillaries or specific anatomical structures such as the Circle of Willis. Addressing this gap, we introduce the first application of \textit{denoising diffusion models} in 3D vessel graph generation. Our contributions include a novel, two-stage generation method that sequentially denoises node coordinates and edges. We experiment with two real-world vessel datasets, consisting of microscopic capillaries and major cerebral vessels, and demonstrate the generalizability of our method for producing diverse, novel, and anatomically plausible vessel graphs.
Temporal reasoning (TR) is a critical component of artificial intelligence, encompassing understanding and processing temporal information and relationships between events. To discover and study the TR ability in Large Language Models (LLMs), various datasets have been constructed in different ways for evaluating various aspects of TR ability. Our work proposes a novel approach to design and develop a pipeline for constructing datasets to evaluate the TR ability of LLMs by leveraging random directed graph generation, LTL formula, and the NuSMV model checker. Based on the pipeline, we have also constructed a dataset as a benchmark, namely LTLBench, consisting of 2,000 TR challenges and evaluated six LLMs with it. Furthermore, we have conducted additional experiments to discover the impact of increasing the number of events and formula operators on the complexity of TR problems and the performance of LLMs. We have demonstrated that although LLMs exhibit some promise in handling TR challenges, they still struggle with complex TR. We expect this work can offer insights into TR ability in LLMs while also providing a valuable tool for future TR evaluations.
Symmetry breaking is a widely popular approach to enhance solvers in constraint programming, such as those for SAT or MIP. Symmetry breaking predicates (SBPs) typically impose an order on variables and single out the lexicographic leader (lex-leader) in each orbit of assignments. Although it is NP-hard to find complete lex-leader SBPs, incomplete lex-leader SBPs are widely used in practice. In this paper, we investigate the complexity of computing complete SBPs, lex-leader or otherwise, for SAT. Our main result proves a natural barrier for efficiently computing SBPs: efficient certification of graph non-isomorphism. Our results explain the difficulty of obtaining short SBPs for important CP problems, such as matrix-models with row-column symmetries and graph generation problems. Our results hold even when SBPs are allowed to introduce additional variables. We show polynomial upper bounds for breaking certain symmetry groups, namely automorphism groups of trees and wreath products of groups with efficient SBPs.