Rerankers play a critical role in multimodal Retrieval-Augmented Generation (RAG) by refining ranking of an initial set of retrieved documents. Rerankers are typically trained using hard negative mining, whose goal is to select pages for each query which rank high, but are actually irrelevant. However, this selection process is typically passive and restricted to what the retriever can find in the available corpus, leading to several inherent limitations. These include: limited diversity, negative examples which are often not hard enough, low controllability, and frequent false negatives which harm training. Our paper proposes an alternative approach: Single-Page Hard Negative Query Generation, which goes the other way around. Instead of retrieving negative pages per query, we generate hard negative queries per page. Using an automated LLM-VLM pipeline, and given a page and its positive query, we create hard negatives by rephrasing the query to be as similar as possible in form and context, yet not answerable from the page. This paradigm enables fine-grained control over the generated queries, resulting in diverse, hard, and targeted negatives. It also supports efficient false negative verification. Our experiments show that rerankers trained with data generated using our approach outperform existing models and significantly improve retrieval performance.
Efforts to ensure the safety of large language models (LLMs) include safety fine-tuning, evaluation, and red teaming. However, despite the widespread use of the Retrieval-Augmented Generation (RAG) framework, AI safety work focuses on standard LLMs, which means we know little about how RAG use cases change a model's safety profile. We conduct a detailed comparative analysis of RAG and non-RAG frameworks with eleven LLMs. We find that RAG can make models less safe and change their safety profile. We explore the causes of this change and find that even combinations of safe models with safe documents can cause unsafe generations. In addition, we evaluate some existing red teaming methods for RAG settings and show that they are less effective than when used for non-RAG settings. Our work highlights the need for safety research and red-teaming methods specifically tailored for RAG LLMs.
Intrusion Detection and Prevention Systems (IDS/IPS) in large enterprises can generate hundreds of thousands of alerts per hour, overwhelming security analysts with logs that demand deep, rapidly evolving domain expertise. Conventional machine-learning detectors trim the alert volume but still yield high false-positive rates, while standard single-pass Retrieval-Augmented Generation (RAG) pipelines often retrieve irrelevant context and fail to justify their predictions. To overcome these shortcomings, we present CyberRAG, a modular, agent-based RAG framework that delivers real-time classification, explanation, and structured reporting for cyber-attacks. A central LLM agent orchestrates (i) a pool of fine-tuned specialized classifiers, each tailored to a distinct attack family; (ii) tool adapters for enrichment and alerting; and (iii) an iterative retrieval-and-reason loop that continuously queries a domain-specific knowledge base until the evidence is both relevant and self-consistent. Unlike traditional RAG systems, CyberRAG embraces an agentic design that enables dynamic control flow and adaptive reasoning. This agent-centric architecture refines its threat labels and natural-language justifications autonomously, reducing false positives and enhancing interpretability. The framework is fully extensible: new attack types can be supported by simply adding a classifier without retraining the core agent. CyberRAG has been evaluated achieving over 94% accuracy per class and pushing final classification accuracy to 94.92% through semantic orchestration. Generated explanations score up to 0.94 in BERTScore and 4.9/5 in GPT-4-based expert evaluation. These results show that agentic, specialist-oriented RAG can pair high detection accuracy with trustworthy, SOC-ready prose, offering a practical and scalable path toward semi-autonomous cyber-defence workflows.
Large language models (LLMs) have recently been applied to dialog systems. Despite making progress, LLMs are prone to errors in knowledge-intensive scenarios. Recently, approaches based on retrieval augmented generation (RAG) and agent have emerged to improve the factual accuracy by enhancing the LLMs with knowledge retrieved from external knowledge bases (KBs). This is mostly implemented by prompting the LLMs with instructions, examples and the retrieved knowledge. However, LLMs may have difficulty using the retrieved knowledge effectively for response generation, because they are not well trained to do such generation for specific domains. To mitigate this problem, we propose to finetune the LLMs in the RAG-based and agent-based systems with domain-specific data, together with domain-specific external knowledge, which is called knowledge augmented finetuning (KAFT). We base our study on the MobileCS2 dataset, a real-life customer service dialog dataset that features intensive knowledge interactions, to systematically compare the prompting and KAFT techniques in the RAG-based and agent-based systems. Experiment results show that KAFT substantially surpasses prompting in both RAG and agent systems, particularly in terms of factual accuracy. To the best of our knowledge, this paper represents the first solid empirical work to investigate the KAFT idea.
Retrieval-Augmented Generation (RAG) has shown promise in enhancing recommendation systems by incorporating external context into large language model prompts. However, existing RAG-based approaches often rely on static retrieval heuristics and fail to capture nuanced user preferences in dynamic recommendation scenarios. In this work, we introduce ARAG, an Agentic Retrieval-Augmented Generation framework for Personalized Recommendation, which integrates a multi-agent collaboration mechanism into the RAG pipeline. To better understand the long-term and session behavior of the user, ARAG leverages four specialized LLM-based agents: a User Understanding Agent that summarizes user preferences from long-term and session contexts, a Natural Language Inference (NLI) Agent that evaluates semantic alignment between candidate items retrieved by RAG and inferred intent, a context summary agent that summarizes the findings of NLI agent, and an Item Ranker Agent that generates a ranked list of recommendations based on contextual fit. We evaluate ARAG accross three datasets. Experimental results demonstrate that ARAG significantly outperforms standard RAG and recency-based baselines, achieving up to 42.1% improvement in NDCG@5 and 35.5% in Hit@5. We also, conduct an ablation study to analyse the effect by different components of ARAG. Our findings highlight the effectiveness of integrating agentic reasoning into retrieval-augmented recommendation and provide new directions for LLM-based personalization.
Visualizations play a crucial part in effective communication of concepts and information. Recent advances in reasoning and retrieval augmented generation have enabled Large Language Models (LLMs) to perform deep research and generate comprehensive reports. Despite its progress, existing deep research frameworks primarily focus on generating text-only content, leaving the automated generation of interleaved texts and visualizations underexplored. This novel task poses key challenges in designing informative visualizations and effectively integrating them with text reports. To address these challenges, we propose Formal Description of Visualization (FDV), a structured textual representation of charts that enables LLMs to learn from and generate diverse, high-quality visualizations. Building on this representation, we introduce Multimodal DeepResearcher, an agentic framework that decomposes the task into four stages: (1) researching, (2) exemplar report textualization, (3) planning, and (4) multimodal report generation. For the evaluation of generated multimodal reports, we develop MultimodalReportBench, which contains 100 diverse topics served as inputs along with 5 dedicated metrics. Extensive experiments across models and evaluation methods demonstrate the effectiveness of Multimodal DeepResearcher. Notably, utilizing the same Claude 3.7 Sonnet model, Multimodal DeepResearcher achieves an 82\% overall win rate over the baseline method.
Large Language Models (LLMs) have demonstrated remarkable capabilities across various tasks, while they remain prone to generating hallucinated or outdated responses due to their static internal knowledge. Recent advancements in Retrieval-Augmented Generation (RAG) methods have explored enhancing models' search and reasoning capabilities through reinforcement learning (RL). Although these methods demonstrate promising results, they face challenges in training stability and encounter issues such as substantial inference time and restricted capabilities due to the single-query mode. In this paper, we propose RAG-R1, a novel training framework designed to enable LLMs to adaptively leverage internal and external knowledge during the reasoning process. We further expand the generation and retrieval processes within the framework from single-query mode to multi-query parallelism, aimed at reducing inference time and enhancing the model's capabilities. Extensive experiments on seven question-answering benchmarks demonstrate that our method outperforms the strongest baseline by up to 13.2% and decreases inference time by 11.1%.
The capabilities of Large Language Models (LLMs) have opened new frontiers for interacting with complex, domain-specific knowledge. However, prevailing methods like Retrieval-Augmented Generation (RAG) and general-purpose Agentic AI, while powerful, often struggle with tasks that demand deep, procedural, and methodological reasoning inherent to expert domains. RAG provides factual context but fails to convey logical frameworks; autonomous agents can be inefficient and unpredictable without domain-specific heuristics. To bridge this gap, we introduce Knowledge Protocol Engineering (KPE), a new paradigm focused on systematically translating human expert knowledge, often expressed in natural language documents, into a machine-executable Knowledge Protocol (KP). KPE shifts the focus from merely augmenting LLMs with fragmented information to endowing them with a domain's intrinsic logic, operational strategies, and methodological principles. We argue that a well-engineered Knowledge Protocol allows a generalist LLM to function as a specialist, capable of decomposing abstract queries and executing complex, multi-step tasks. This position paper defines the core principles of KPE, differentiates it from related concepts, and illustrates its potential applicability across diverse fields such as law and bioinformatics, positing it as a foundational methodology for the future of human-AI collaboration.
Efficiently ranking relevant items from large candidate pools is a cornerstone of modern information retrieval systems -- such as web search, recommendation, and retrieval-augmented generation. Listwise rerankers, which improve relevance by jointly considering multiple candidates, are often limited in practice: either by model input size constraints, or by degraded quality when processing large sets. We propose a model-agnostic method for fast reranking large sets that exceed a model input limits. The method first partitions candidate items into overlapping blocks, each of which is ranked independently in parallel. Implicit pairwise comparisons are then derived from these local rankings. Finally, these comparisons are aggregated to construct a global ranking using algorithms such as Winrate or PageRank. Experiments on TREC DL-2019 show that our method achieves an nDCG@10 of 70.88 compared to the 57.68 for full-context listwise approach using gpt-4.1-mini as long-context model, while reducing latency from 21 to 8 seconds. The implementation of the algorithm and the experiments is available in the repository: https://github.com/V3RGANz/jointrank
Community Question Answering (CQA) platforms can be deemed as important knowledge bases in community, but effectively leveraging historical interactions and domain knowledge in real-time remains a challenge. Existing methods often underutilize external knowledge, fail to incorporate dynamic historical QA context, or lack memory mechanisms suited for industrial deployment. We propose ComRAG, a retrieval-augmented generation framework for real-time industrial CQA that integrates static knowledge with dynamic historical QA pairs via a centroid-based memory mechanism designed for retrieval, generation, and efficient storage. Evaluated on three industrial CQA datasets, ComRAG consistently outperforms all baselines--achieving up to 25.9% improvement in vector similarity, reducing latency by 8.7% to 23.3%, and lowering chunk growth from 20.23% to 2.06% over iterations.
Advanced intelligent systems, particularly Large Language Models (LLMs), are significantly reshaping financial practices through advancements in Natural Language Processing (NLP). However, the extent to which these models effectively capture and apply domain-specific financial knowledge remains uncertain. Addressing a critical gap in the expansive Indian financial context, this paper introduces CA-Ben, a Chartered Accountancy benchmark specifically designed to evaluate the financial, legal, and quantitative reasoning capabilities of LLMs. CA-Ben comprises structured question-answer datasets derived from the rigorous examinations conducted by the Institute of Chartered Accountants of India (ICAI), spanning foundational, intermediate, and advanced CA curriculum stages. Six prominent LLMs i.e. GPT 4o, LLAMA 3.3 70B, LLAMA 3.1 405B, MISTRAL Large, Claude 3.5 Sonnet, and Microsoft Phi 4 were evaluated using standardized protocols. Results indicate variations in performance, with Claude 3.5 Sonnet and GPT-4o outperforming others, especially in conceptual and legal reasoning. Notable challenges emerged in numerical computations and legal interpretations. The findings emphasize the strengths and limitations of current LLMs, suggesting future improvements through hybrid reasoning and retrieval-augmented generation methods, particularly for quantitative analysis and accurate legal interpretation.
The development of biological data analysis tools and large language models (LLMs) has opened up new possibilities for utilizing AI in plant science research, with the potential to contribute significantly to knowledge integration and research gap identification. Nonetheless, current LLMs struggle to handle complex biological data and theoretical models in photosynthesis research and often fail to provide accurate scientific contexts. Therefore, this study proposed a photosynthesis research assistant (PRAG) based on OpenAI's GPT-4o with retrieval-augmented generation (RAG) techniques and prompt optimization. Vector databases and an automated feedback loop were used in the prompt optimization process to enhance the accuracy and relevance of the responses to photosynthesis-related queries. PRAG showed an average improvement of 8.7% across five metrics related to scientific writing, with a 25.4% increase in source transparency. Additionally, its scientific depth and domain coverage were comparable to those of photosynthesis research papers. A knowledge graph was used to structure PRAG's responses with papers within and outside the database, which allowed PRAG to match key entities with 63% and 39.5% of the database and test papers, respectively. PRAG can be applied for photosynthesis research and broader plant science domains, paving the way for more in-depth data analysis and predictive capabilities.
Real-world live retrieval-augmented generation (RAG) systems face significant challenges when processing user queries that are often noisy, ambiguous, and contain multiple intents. While RAG enhances large language models (LLMs) with external knowledge, current systems typically struggle with such complex inputs, as they are often trained or evaluated on cleaner data. This paper introduces Omni-RAG, a novel framework designed to improve the robustness and effectiveness of RAG systems in live, open-domain settings. Omni-RAG employs LLM-assisted query understanding to preprocess user inputs through three key modules: (1) Deep Query Understanding and Decomposition, which utilizes LLMs with tailored prompts to denoise queries (e.g., correcting spelling errors) and decompose multi-intent queries into structured sub-queries; (2) Intent-Aware Knowledge Retrieval, which performs retrieval for each sub-query from a corpus (i.e., FineWeb using OpenSearch) and aggregates the results; and (3) Reranking and Generation, where a reranker (i.e., BGE) refines document selection before a final response is generated by an LLM (i.e., Falcon-10B) using a chain-of-thought prompt. Omni-RAG aims to bridge the gap between current RAG capabilities and the demands of real-world applications, such as those highlighted by the SIGIR 2025 LiveRAG Challenge, by robustly handling complex and noisy queries.
Graph-based Retrieval-Augmented Generation (Graph-RAG) enhances large language models (LLMs) by structuring retrieval over an external corpus. However, existing approaches typically assume a static corpus, requiring expensive full-graph reconstruction whenever new documents arrive, limiting their scalability in dynamic, evolving environments. To address these limitations, we introduce EraRAG, a novel multi-layered Graph-RAG framework that supports efficient and scalable dynamic updates. Our method leverages hyperplane-based Locality-Sensitive Hashing (LSH) to partition and organize the original corpus into hierarchical graph structures, enabling efficient and localized insertions of new data without disrupting the existing topology. The design eliminates the need for retraining or costly recomputation while preserving high retrieval accuracy and low latency. Experiments on large-scale benchmarks demonstrate that EraRag achieves up to an order of magnitude reduction in update time and token consumption compared to existing Graph-RAG systems, while providing superior accuracy performance. This work offers a practical path forward for RAG systems that must operate over continually growing corpora, bridging the gap between retrieval efficiency and adaptability. Our code and data are available at https://github.com/EverM0re/EraRAG-Official.
Retrieval-Augmented Generation (RAG), by integrating non-parametric knowledge from external knowledge bases into models, has emerged as a promising approach to enhancing response accuracy while mitigating factual errors and hallucinations. This method has been widely applied in tasks such as Question Answering (QA). However, existing RAG methods struggle with open-domain QA tasks because they perform independent retrieval operations and directly incorporate the retrieved information into generation without maintaining a summarizing memory or using adaptive retrieval strategies, leading to noise from redundant information and insufficient information integration. To address these challenges, we propose Adaptive memory-based optimization for enhanced RAG (Amber) for open-domain QA tasks, which comprises an Agent-based Memory Updater, an Adaptive Information Collector, and a Multi-granular Content Filter, working together within an iterative memory updating paradigm. Specifically, Amber integrates and optimizes the language model's memory through a multi-agent collaborative approach, ensuring comprehensive knowledge integration from previous retrieval steps. It dynamically adjusts retrieval queries and decides when to stop retrieval based on the accumulated knowledge, enhancing retrieval efficiency and effectiveness. Additionally, it reduces noise by filtering irrelevant content at multiple levels, retaining essential information to improve overall model performance. We conduct extensive experiments on several open-domain QA datasets, and the results demonstrate the superiority and effectiveness of our method and its components. The source code is available \footnote{https://anonymous.4open.science/r/Amber-B203/}.
Retrieval-Augmented Generation (RAG) systems are increasingly vital for navigating the ever-expanding body of scientific literature, particularly in high-stakes domains such as chemistry. Despite the promise of RAG, foundational design choices -- such as how documents are segmented and represented -- remain underexplored in domain-specific contexts. This study presents the first large-scale, systematic evaluation of chunking strategies and embedding models tailored to chemistry-focused RAG systems. We investigate 25 chunking configurations across five method families and evaluate 48 embedding models on three chemistry-specific benchmarks, including the newly introduced QuestChemRetrieval dataset. Our results reveal that recursive token-based chunking (specifically R100-0) consistently outperforms other approaches, offering strong performance with minimal resource overhead. We also find that retrieval-optimized embeddings -- such as Nomic and Intfloat E5 variants -- substantially outperform domain-specialized models like SciBERT. By releasing our datasets, evaluation framework, and empirical benchmarks, we provide actionable guidelines for building effective and efficient chemistry-aware RAG systems.
This work demonstrates electronic logbook (eLog) systems leveraging modern AI-driven information retrieval capabilities at the accelerator facilities of Fermilab, Jefferson Lab, Lawrence Berkeley National Laboratory (LBNL), SLAC National Accelerator Laboratory. We evaluate contemporary tools and methodologies for information retrieval with Retrieval Augmented Generation (RAGs), focusing on operational insights and integration with existing accelerator control systems. The study addresses challenges and proposes solutions for state-of-the-art eLog analysis through practical implementations, demonstrating applications and limitations. We present a framework for enhancing accelerator facility operations through improved information accessibility and knowledge management, which could potentially lead to more efficient operations.
The increasing use of synthetic data from the public Internet has enhanced data usage efficiency in large language model (LLM) training. However, the potential threat of model collapse remains insufficiently explored. Existing studies primarily examine model collapse in a single model setting or rely solely on statistical surrogates. In this work, we introduce LLM Web Dynamics (LWD), an efficient framework for investigating model collapse at the network level. By simulating the Internet with a retrieval-augmented generation (RAG) database, we analyze the convergence pattern of model outputs. Furthermore, we provide theoretical guarantees for this convergence by drawing an analogy to interacting Gaussian Mixture Models.
Retrieval-Augmented Generation (RAG) systems are emerging as a key approach for grounding Large Language Models (LLMs) in external knowledge, addressing limitations in factual accuracy and contextual relevance. However, there is a lack of empirical studies that report on the development of RAG-based implementations grounded in real-world use cases, evaluated through general user involvement, and accompanied by systematic documentation of lessons learned. This paper presents five domain-specific RAG applications developed for real-world scenarios across governance, cybersecurity, agriculture, industrial research, and medical diagnostics. Each system incorporates multilingual OCR, semantic retrieval via vector embeddings, and domain-adapted LLMs, deployed through local servers or cloud APIs to meet distinct user needs. A web-based evaluation involving a total of 100 participants assessed the systems across six dimensions: (i) Ease of Use, (ii) Relevance, (iii) Transparency, (iv) Responsiveness, (v) Accuracy, and (vi) Likelihood of Recommendation. Based on user feedback and our development experience, we documented twelve key lessons learned, highlighting technical, operational, and ethical challenges affecting the reliability and usability of RAG systems in practice.
This paper addresses the challenge of developing multimodal recommender systems for the movie domain, where limited metadata (e.g., title, genre) often hinders the generation of robust recommendations. We introduce a resource that combines LLM-generated plot descriptions with trailer-derived visual embeddings in a unified pipeline supporting both Retrieval-Augmented Generation (RAG) and collaborative filtering. Central to our approach is a data augmentation step that transforms sparse metadata into richer textual signals, alongside fusion strategies (e.g., PCA, CCA) that integrate visual cues. Experimental evaluations demonstrate that CCA-based fusion significantly boosts recall compared to unimodal baselines, while an LLM-driven re-ranking step further improves NDCG, particularly in scenarios with limited textual data. By releasing this framework, we invite further exploration of multi-modal recommendation techniques tailored to cold-start, novelty-focused, and domain-specific settings. All code, data, and detailed documentation are publicly available at: https://github.com/RecSys-lab/RAG-VisualRec