Code search aims to retrieve semantically relevant code snippets for natural language queries. While pre-trained language models (PLMs) have shown remarkable performance in this task, they struggle in cross-domain scenarios, often requiring costly fine-tuning or facing performance drops in zero-shot settings. RAPID, which generates synthetic data for model fine-tuning, is currently the only effective method for zero-shot cross-domain code search. Despite its effectiveness, RAPID demands substantial computational resources for fine-tuning and needs to maintain specialized models for each domain, underscoring the need for a zero-shot, fine-tuning-free approach for cross-domain code search. The key to tackling zero-shot cross-domain code search lies in bridging the gaps among domains. In this work, we propose to break the query-code matching process of code search into two simpler tasks: query-comment matching and code-code matching. Our empirical study reveals the strong complementarity among the three matching schemas in zero-shot cross-domain settings, i.e., query-code, query-comment, and code-code matching. Based on the findings, we propose CodeBridge, a zero-shot, fine-tuning-free approach for cross-domain code search. Specifically, CodeBridge uses Large Language Models (LLMs) to generate comments and pseudo-code, then combines query-code, query-comment, and code-code matching via PLM-based similarity scoring and sampling-based fusion. Experimental results show that our approach outperforms the state-of-the-art PLM-based code search approaches, i.e., CoCoSoDa and UniXcoder, by an average of 21.4% and 24.9% in MRR, respectively, across three datasets. Our approach also yields results that are better than or comparable to those of the zero-shot cross-domain code search approach RAPID, which requires costly fine-tuning.
This paper presents a multi-stage reranking system for repository-level code search, which leverages the vastly available commit histories of large open-source repositories to aid in bug fixing. We define the task of repository-level code search as retrieving the set of files from the current state of a code repository that are most relevant to addressing a user's question or bug. The proposed approach combines BM25-based retrieval over commit messages with neural reranking using CodeBERT to identify the most pertinent files. By learning patterns from diverse repositories and their commit histories, the system can surface relevant files for the task at hand. The system leverages both commit messages and source code for relevance matching, and is evaluated in both normal and oracle settings. Experiments on a new dataset created from 7 popular open-source repositories demonstrate substantial improvements of up to 80% in MAP, MRR and P@1 over the BM25 baseline, across a diverse set of queries, demonstrating the effectiveness this approach. We hope this work aids LLM agents as a tool for better code search and understanding. Our code and results obtained are publicly available.
Low isotropy in an embedding space impairs performance on tasks involving semantic inference. Our study investigates the impact of isotropy on semantic code search performance and explores post-processing techniques to mitigate this issue. We analyze various code language models, examine isotropy in their embedding spaces, and its influence on search effectiveness. We propose a modified ZCA whitening technique to control isotropy levels in embeddings. Our results demonstrate that Soft-ZCA whitening improves the performance of pre-trained code language models and can complement contrastive fine-tuning.
Assembly code search is vital for reducing the burden on reverse engineers, allowing them to quickly identify specific functions using natural language within vast binary programs. Despite its significance, this critical task is impeded by the complexities involved in building high-quality datasets. This paper explores training a Large Language Model (LLM) to emulate a general compiler. By leveraging Ubuntu packages to compile a dataset of 20 billion tokens, we further continue pre-train CodeLlama as a Virtual Compiler (ViC), capable of compiling any source code of any language to assembly code. This approach allows for virtual compilation across a wide range of programming languages without the need for a real compiler, preserving semantic equivalency and expanding the possibilities for assembly code dataset construction. Furthermore, we use ViC to construct a sufficiently large dataset for assembly code search. Employing this extensive dataset, we achieve a substantial improvement in assembly code search performance, with our model surpassing the leading baseline by 26%.
Despite the substantial success of Information Retrieval (IR) in various NLP tasks, most IR systems predominantly handle queries and corpora in natural language, neglecting the domain of code retrieval. Code retrieval is critically important yet remains under-explored, with existing methods and benchmarks inadequately representing the diversity of code in various domains and tasks. Addressing this gap, we present COIR (Code Information Retrieval Benchmark), a robust and comprehensive benchmark specifically designed to assess code retrieval capabilities. COIR comprises ten meticulously curated code datasets, spanning eight distinctive retrieval tasks across seven diverse domains. We first discuss the construction of COIR and its diverse dataset composition. Further, we evaluate nine widely used retrieval models using COIR, uncovering significant difficulties in performing code retrieval tasks even with state-of-the-art systems. To facilitate easy adoption and integration within existing research workflows, COIR has been developed as a user-friendly Python framework, readily installable via pip. It shares same data schema as other popular benchmarks like MTEB and BEIR, enabling seamless cross-benchmark evaluations. Through COIR, we aim to invigorate research in the code retrieval domain, providing a versatile benchmarking tool that encourages further development and exploration of code retrieval systems https://github.com/CoIR-team/coir.
Semantic code search, retrieving code that matches a given natural language query, is an important task to improve productivity in software engineering. Existing code search datasets face limitations: they rely on human annotators who assess code primarily through semantic understanding rather than functional verification, leading to potential inaccuracies and scalability issues. Additionally, current evaluation metrics often overlook the multi-choice nature of code search. This paper introduces CoSQA+, pairing high-quality queries from CoSQA with multiple suitable codes. We develop an automated pipeline featuring multiple model-based candidate selections and the novel test-driven agent annotation system. Among a single Large Language Model (LLM) annotator and Python expert annotators (without test-based verification), agents leverage test-based verification and achieve the highest accuracy of 92.0%. Through extensive experiments, CoSQA+ has demonstrated superior quality over CoSQA. Models trained on CoSQA+ exhibit improved performance. We provide the code and data at https://github.com/DeepSoftwareAnalytics/CoSQA_Plus.
Recent advances have been improving the context windows of Large Language Models (LLMs). To quantify the real long-context capabilities of LLMs, evaluators such as the popular Needle in a Haystack have been developed to test LLMs over a large chunk of raw texts. While effective, current evaluations overlook the insight of how LLMs work with long-context code, i.e., repositories. To this end, we initiate the RepoQA benchmark to evaluate LLMs on long-context code understanding. Traditional needle testers ask LLMs to directly retrieve the answer from the context without necessary deep understanding. In RepoQA, we built our initial task, namely Searching Needle Function (SNF), which exercises LLMs to search functions given their natural-language description, i.e., LLMs cannot find the desired function if they cannot understand the description and code. RepoQA is multilingual and comprehensive: it includes 500 code search tasks gathered from 50 popular repositories across 5 modern programming languages. By evaluating 26 general and code-specific LLMs on RepoQA, we show (i) there is still a small gap between the best open and proprietary models; (ii) different models are good at different languages; and (iii) models may understand code better without comments.
The capability of accurately determining code similarity is crucial in many tasks related to software development. For example, it might be essential to identify code duplicates for performing software maintenance. This research introduces a novel ensemble learning approach for code similarity assessment, combining the strengths of multiple unsupervised similarity measures. The key idea is that the strengths of a diverse set of similarity measures can complement each other and mitigate individual weaknesses, leading to improved performance. Preliminary results show that while Transformers-based CodeBERT and its variant GraphCodeBERT are undoubtedly the best option in the presence of abundant training data, in the case of specific small datasets (up to 500 samples), our ensemble achieves similar results, without prejudice to the interpretability of the resulting solution, and with a much lower associated carbon footprint due to training. The source code of this novel approach can be downloaded from https://github.com/jorge-martinez-gil/ensemble-codesim.
Researchers have made significant progress in automating the software development process in the past decades. Recent progress in Large Language Models (LLMs) has significantly impacted the development process, where developers can use LLM-based programming assistants to achieve automated coding. Nevertheless, software engineering involves the process of program improvement apart from coding, specifically to enable software maintenance (e.g. bug fixing) and software evolution (e.g. feature additions). In this paper, we propose an automated approach for solving GitHub issues to autonomously achieve program improvement. In our approach called AutoCodeRover, LLMs are combined with sophisticated code search capabilities, ultimately leading to a program modification or patch. In contrast to recent LLM agent approaches from AI researchers and practitioners, our outlook is more software engineering oriented. We work on a program representation (abstract syntax tree) as opposed to viewing a software project as a mere collection of files. Our code search exploits the program structure in the form of classes/methods to enhance LLM's understanding of the issue's root cause, and effectively retrieve a context via iterative search. The use of spectrum-based fault localization using tests, further sharpens the context, as long as a test-suite is available. Experiments on SWE-bench-lite (300 real-life GitHub issues) show increased efficacy in solving GitHub issues (19% on SWE-bench-lite), which is higher than the efficacy of the recently reported SWE-agent. In addition, AutoCodeRover achieved this efficacy with significantly lower cost (on average, $0.43 USD), compared to other baselines. We posit that our workflow enables autonomous software engineering, where, in future, auto-generated code from LLMs can be autonomously improved.
Retrieval-based code question answering seeks to match user queries in natural language to relevant code snippets. Previous approaches typically rely on pretraining models using crafted bi-modal and uni-modal datasets to align text and code representations. In this paper, we introduce ProCQA, a large-scale programming question answering dataset extracted from the StackOverflow community, offering naturally structured mixed-modal QA pairs. To validate its effectiveness, we propose a modality-agnostic contrastive pre-training approach to improve the alignment of text and code representations of current code language models. Compared to previous models that primarily employ bimodal and unimodal pairs extracted from CodeSearchNet for pre-training, our model exhibits significant performance improvements across a wide range of code retrieval benchmarks.
Assessing similarity in source code has gained significant attention in recent years due to its importance in software engineering tasks such as clone detection and code search and recommendation. This work presents a comparative analysis of unsupervised similarity measures for identifying source code clone detection. The goal is to overview the current state-of-the-art techniques, their strengths, and weaknesses. To do that, we compile the existing unsupervised strategies and evaluate their performance on a benchmark dataset to guide software engineers in selecting appropriate methods for their specific use cases. The source code of this study is available at https://github.com/jorge-martinez-gil/codesim
In code search, the Generation-Augmented Retrieval (GAR) framework, which generates exemplar code snippets to augment queries, has emerged as a promising strategy to address the principal challenge of modality misalignment between code snippets and natural language queries, particularly with the demonstrated code generation capabilities of Large Language Models (LLMs). Nevertheless, our preliminary investigations indicate that the improvements conferred by such an LLM-augmented framework are somewhat constrained. This limitation could potentially be ascribed to the fact that the generated codes, albeit functionally accurate, frequently display a pronounced stylistic deviation from the ground truth code in the codebase. In this paper, we extend the foundational GAR framework and propose a simple yet effective method that additionally Rewrites the Code (ReCo) within the codebase for style normalization. Experimental results demonstrate that ReCo significantly boosts retrieval accuracy across sparse (up to 35.7%), zero-shot dense (up to 27.6%), and fine-tuned dense (up to 23.6%) retrieval settings in diverse search scenarios. To further elucidate the advantages of ReCo and stimulate research in code style normalization, we introduce Code Style Similarity, the first metric tailored to quantify stylistic similarities in code. Notably, our empirical findings reveal the inadequacy of existing metrics in capturing stylistic nuances. The source code and data are available at \url{https://github.com/Alex-HaochenLi/ReCo}.
Language models can serve as a valuable tool for software developers to increase productivity. Large generative models can be used for code generation and code completion, while smaller encoder-only models are capable of performing code search tasks using natural language queries.These capabilities are heavily influenced by the quality and diversity of the available training data. Source code datasets used for training usually focus on the most popular languages and testing is mostly conducted on the same distributions, often overlooking low-resource programming languages. Motivated by the NLP generalization taxonomy proposed by Hupkes et.\,al., we propose a new benchmark dataset called GenCodeSearchNet (GeCS) which builds upon existing natural language code search datasets to systemically evaluate the programming language understanding generalization capabilities of language models. As part of the full dataset, we introduce a new, manually curated subset StatCodeSearch that focuses on R, a popular but so far underrepresented programming language that is often used by researchers outside the field of computer science. For evaluation and comparison, we collect several baseline results using fine-tuned BERT-style models and GPT-style large language models in a zero-shot setting.
Artificial intelligence (AI) has revolutionized software engineering (SE) by enhancing software development efficiency. The advent of pre-trained models (PTMs) leveraging transfer learning has significantly advanced AI for SE. However, existing PTMs that operate on individual code tokens suffer from several limitations: They are costly to train and fine-tune; and they rely heavily on labeled data for fine-tuning on task-specific datasets. In this paper, we present TransformCode, a novel framework that learns code embeddings in a contrastive learning manner. Our framework is encoder-agnostic and language-agnostic, which means that it can leverage any encoder model and handle any programming language. We also propose a novel data-augmentation technique called abstract syntax tree (AST) transformation, which applies syntactic and semantic transformations to the original code snippets, to generate more diverse and robust samples for contrastive learning. Our framework has several advantages over existing methods: (1) It is flexible and adaptable, because it can easily be extended to other downstream tasks that require code representation (such as code-clone detection and classification); (2) it is efficient and scalable, because it does not require a large model or a large amount of training data, and it can support any programming language; (3) it is not limited to unsupervised learning, but can also be applied to some supervised learning tasks by incorporating task-specific labels or objectives; and (4) it can also adjust the number of encoder parameters based on computing resources. We evaluate our framework on several code-related tasks, and demonstrate its effectiveness and superiority over the state-of-the-art methods such as SourcererCC, Code2vec, and InferCode.
In the large language model (LLM) revolution, embedding is a key component of various systems. For example, it is used to retrieve knowledge or memories for LLMs, to build content moderation filters, etc. As such cases span from English to other natural or programming languages, from retrieval to classification and beyond, it is desirable to build a unified embedding model rather than dedicated ones for each scenario. In this work, we make an initial step towards this goal, demonstrating that multiple languages (both natural and programming) pre-trained transformer decoders can embed universally when finetuned on limited English data. We provide a comprehensive practice with thorough evaluations. On English MTEB, our models achieve competitive performance on different embedding tasks by minimal training data. On other benchmarks, such as multilingual classification and code search, our models (without any supervision) perform comparably to, or even surpass heavily supervised baselines and/or APIs. These results provide evidence of a promising path towards building powerful unified embedders that can be applied across tasks and languages.
Recently, contrastive learning has become a key component in fine-tuning code search models for software development efficiency and effectiveness. It pulls together positive code snippets while pushing negative samples away given search queries. Among contrastive learning, InfoNCE is the most widely used loss function due to its better performance. However, the following problems in negative samples of InfoNCE may deteriorate its representation learning: 1) The existence of false negative samples in large code corpora due to duplications. 2). The failure to explicitly differentiate between the potential relevance of negative samples. As an example, a bubble sorting algorithm example is less ``negative'' than a file saving function for the quick sorting algorithm query. In this paper, we tackle the above problems by proposing a simple yet effective Soft-InfoNCE loss that inserts weight terms into InfoNCE. In our proposed loss function, we apply three methods to estimate the weights of negative pairs and show that the vanilla InfoNCE loss is a special case of Soft-InfoNCE. Theoretically, we analyze the effects of Soft-InfoNCE on controlling the distribution of learnt code representations and on deducing a more precise mutual information estimation. We furthermore discuss the superiority of proposed loss functions with other design alternatives. Extensive experiments demonstrate the effectiveness of Soft-InfoNCE and weights estimation methods under state-of-the-art code search models on a large-scale public dataset consisting of six programming languages. Source code is available at \url{https://github.com/Alex-HaochenLi/Soft-InfoNCE}.
Software developers often struggle to update APIs, leading to manual, time-consuming, and error-prone processes. We introduce MELT, a new approach that generates lightweight API migration rules directly from pull requests in popular library repositories. Our key insight is that pull requests merged into open-source libraries are a rich source of information sufficient to mine API migration rules. By leveraging code examples mined from the library source and automatically generated code examples based on the pull requests, we infer transformation rules in \comby, a language for structural code search and replace. Since inferred rules from single code examples may be too specific, we propose a generalization procedure to make the rules more applicable to client projects. MELT rules are syntax-driven, interpretable, and easily adaptable. Moreover, unlike previous work, our approach enables rule inference to seamlessly integrate into the library workflow, removing the need to wait for client code migrations. We evaluated MELT on pull requests from four popular libraries, successfully mining 461 migration rules from code examples in pull requests and 114 rules from auto-generated code examples. Our generalization procedure increases the number of matches for mined rules by 9x. We applied these rules to client projects and ran their tests, which led to an overall decrease in the number of warnings and fixing some test cases demonstrating MELT's effectiveness in real-world scenarios.
Code search is a task to find programming codes that semantically match the given natural language queries. Even though some of the existing datasets for this task are multilingual on the programming language side, their query data are only in English. In this research, we create a multilingual code search dataset in four natural and four programming languages using a neural machine translation model. Using our dataset, we pre-train and fine-tune the Transformer-based models and then evaluate them on multiple code search test sets. Our results show that the model pre-trained with all natural and programming language data has performed best in most cases. By applying back-translation data filtering to our dataset, we demonstrate that the translation quality affects the model's performance to a certain extent, but the data size matters more.
This paper presents Structure Aware Dense Retrieval (SANTA) model, which encodes user queries and structured data in one universal embedding space for retrieving structured data. SANTA proposes two pretraining methods to make language models structure-aware and learn effective representations for structured data: 1) Structured Data Alignment, which utilizes the natural alignment relations between structured data and unstructured data for structure-aware pretraining. It contrastively trains language models to represent multi-modal text data and teaches models to distinguish matched structured data for unstructured texts. 2) Masked Entity Prediction, which designs an entity-oriented mask strategy and asks language models to fill in the masked entities. Our experiments show that SANTA achieves state-of-the-art on code search and product search and conducts convincing results in the zero-shot setting. SANTA learns tailored representations for multi-modal text data by aligning structured and unstructured data pairs and capturing structural semantics by masking and predicting entities in the structured data. All codes are available at https://github.com/OpenMatch/OpenMatch.
Reusing off-the-shelf code snippets from online repositories is a common practice, which significantly enhances the productivity of software developers. To find desired code snippets, developers resort to code search engines through natural language queries. Neural code search models are hence behind many such engines. These models are based on deep learning and gain substantial attention due to their impressive performance. However, the security aspect of these models is rarely studied. Particularly, an adversary can inject a backdoor in neural code search models, which return buggy or even vulnerable code with security/privacy issues. This may impact the downstream software (e.g., stock trading systems and autonomous driving) and cause financial loss and/or life-threatening incidents. In this paper, we demonstrate such attacks are feasible and can be quite stealthy. By simply modifying one variable/function name, the attacker can make buggy/vulnerable code rank in the top 11%. Our attack BADCODE features a special trigger generation and injection procedure, making the attack more effective and stealthy. The evaluation is conducted on two neural code search models and the results show our attack outperforms baselines by 60%. Our user study demonstrates that our attack is more stealthy than the baseline by two times based on the F1 score.