We introduce dense relational captioning, a novel image captioning task which aims to generate multiple captions with respect to relational information between objects in a visual scene. Relational captioning provides explicit descriptions for each relationship between object combinations. This framework is advantageous in both diversity and amount of information, leading to a comprehensive image understanding based on relationships, e.g., relational proposal generation. For relational understanding between objects, the part-of-speech (POS; i.e., subject-object-predicate categories) can be a valuable prior information to guide the causal sequence of words in a caption. We enforce our framework to learn not only to generate captions but also to understand the POS of each word. To this end, we propose the multi-task triple-stream network (MTTSNet) which consists of three recurrent units responsible for each POS which is trained by jointly predicting the correct captions and POS for each word. In addition, we found that the performance of MTTSNet can be improved by modulating the object embeddings with an explicit relational module. We demonstrate that our proposed model can generate more diverse and richer captions, via extensive experimental analysis on large scale datasets and several metrics. Then, we present applications of our framework to holistic image captioning, scene graph generation, and retrieval tasks.
Structured representations like graphs and parse trees play a crucial role in many Natural Language Processing systems. In recent years, the advancements in multi-turn user interfaces necessitate the need for controlling and updating these structured representations given new sources of information. Although there have been many efforts focusing on improving the performance of the parsers that map text to graphs or parse trees, very few have explored the problem of directly manipulating these representations. In this paper, we explore the novel problem of graph modification, where the systems need to learn how to update an existing scene graph given a new user's command. Our novel models based on graph-based sparse transformer and cross attention information fusion outperform previous systems adapted from the machine translation and graph generation literature. We further contribute our large graph modification datasets to the research community to encourage future research for this new problem.
Several works based on Generative Adversarial Networks (GAN) have been recently proposed to predict a set of medical images from a single modality (e.g, FLAIR MRI from T1 MRI). However, such frameworks are primarily designed to operate on images, limiting their generalizability to non-Euclidean geometric data such as brain graphs. While a growing number of connectomic studies has demonstrated the promise of including brain graphs for diagnosing neurological disorders, no geometric deep learning work was designed for multiple target brain graphs prediction from a source brain graph. Despite the momentum the field of graph generation has gained in the last two years, existing works have two critical drawbacks. First, the bulk of such works aims to learn one model for each target domain to generate from a source domain. Thus, they have a limited scalability in jointly predicting multiple target domains. Second, they merely consider the global topological scale of a graph (i.e., graph connectivity structure) and overlook the local topology at the node scale of a graph (e.g., how central a node is in the graph). To meet these challenges, we introduce MultiGraphGAN architecture, which not only predicts multiple brain graphs from a single brain graph but also preserves the topological structure of each target graph to predict. Its three core contributions lie in: (i) designing a graph adversarial auto-encoder for jointly predicting brain graphs from a single one, (ii) handling the mode collapse problem of GAN by clustering the encoded source graphs and proposing a cluster-specific decoder, (iii) introducing a topological loss to force the reconstruction of topologically sound target brain graphs. Our MultiGraphGAN significantly outperformed its variants thereby showing its great potential in multi-view brain graph generation from a single graph.
Scene graphs are semantic abstraction of images that encourage visual understanding and reasoning. However, the performance of Scene Graph Generation (SGG) is unsatisfactory when faced with biased data in real-world scenarios. Conventional debiasing research mainly studies from the view of balancing data distribution or learning unbiased models and representations, ignoring the correlations among the biased classes. In this work, we analyze this problem from a novel cognition perspective: automatically building a hierarchical cognitive structure from the biased predictions and navigating that hierarchy to locate the relationships, making the tail relationships receive more attention in a coarse-to-fine mode. To this end, we propose a novel debiasing Cognition Tree (CogTree) loss for unbiased SGG. We first build a cognitive structure CogTree to organize the relationships based on the prediction of a biased SGG model. The CogTree distinguishes remarkably different relationships at first and then focuses on a small portion of easily confused ones. Then, we propose a debiasing loss specially for this cognitive structure, which supports coarse-to-fine distinction for the correct relationships. The loss is model-agnostic and consistently boosting the performance of several state-of-the-art models. The code is available at: https://github.com/CYVincent/Scene-Graph-Transformer-CogTree.
Scene graph aims to faithfully reveal humans' perception of image content. When humans analyze a scene, they usually prefer to describe image gist first, namely major objects and key relations in a scene graph. This humans' inherent perceptive habit implies that there exists a hierarchical structure about humans' preference during the scene parsing procedure. Therefore, we argue that a desirable scene graph should be also hierarchically constructed, and introduce a new scheme for modeling scene graph. Concretely, a scene is represented by a human-mimetic Hierarchical Entity Tree (HET) consisting of a series of image regions. To generate a scene graph based on HET, we parse HET with a Hybrid Long Short-Term Memory (Hybrid-LSTM) which specifically encodes hierarchy and siblings context to capture the structured information embedded in HET. To further prioritize key relations in the scene graph, we devise a Relation Ranking Module (RRM) to dynamically adjust their rankings by learning to capture humans' subjective perceptive habits from objective entity saliency and size. Experiments indicate that our method not only achieves state-of-the-art performances for scene graph generation, but also is expert in mining image-specific relations which play a great role in serving downstream tasks.
Inferring objects and their relationships from an image in the form of a scene graph is useful in many applications at the intersection of vision and language. We consider a challenging problem of compositional generalization that emerges in this task due to a long tail data distribution. Current scene graph generation models are trained on a tiny fraction of the distribution corresponding to the most frequent compositions, e.g. <cup, on, table>. However, test images might contain zero- and few-shot compositions of objects and relationships, e.g. <cup, on, surfboard>. Despite each of the object categories and the predicate (e.g. 'on') being frequent in the training data, the models often fail to properly understand such unseen or rare compositions. To improve generalization, it is natural to attempt increasing the diversity of the training distribution. However, in the graph domain this is non-trivial. To that end, we propose a method to synthesize rare yet plausible scene graphs by perturbing real ones. We then propose and empirically study a model based on conditional generative adversarial networks (GANs) that allows us to generate visual features of perturbed scene graphs and learn from them in a joint fashion. When evaluated on the Visual Genome dataset, our approach yields marginal, but consistent improvements in zero- and few-shot metrics. We analyze the limitations of our approach indicating promising directions for future research.
Learning to infer graph representations and performing spatial reasoning in a complex surgical environment can play a vital role in surgical scene understanding in robotic surgery. For this purpose, we develop an approach to generate the scene graph and predict surgical interactions between instruments and surgical region of interest (ROI) during robot-assisted surgery. We design an attention link function and integrate with a graph parsing network to recognize the surgical interactions. To embed each node with corresponding neighbouring node features, we further incorporate SageConv into the network. The scene graph generation and active edge classification mostly depend on the embedding or feature extraction of node and edge features from complex image representation. Here, we empirically demonstrate the feature extraction methods by employing label smoothing weighted loss. Smoothing the hard label can avoid the over-confident prediction of the model and enhances the feature representation learned by the penultimate layer. To obtain the graph scene label, we annotate the bounding box and the instrument-ROI interactions on the robotic scene segmentation challenge 2018 dataset with an experienced clinical expert in robotic surgery and employ it to evaluate our propositions.
Modeling complex spatial and temporal correlations in the correlated time series data is indispensable for understanding the traffic dynamics and predicting the future status of an evolving traffic system. Recent works focus on designing complicated graph neural network architectures to capture shared patterns with the help of pre-defined graphs. In this paper, we argue that learning node-specific patterns is essential for traffic forecasting while the pre-defined graph is avoidable. To this end, we propose two adaptive modules for enhancing Graph Convolutional Network (GCN) with new capabilities: 1) a Node Adaptive Parameter Learning (NAPL) module to capture node-specific patterns; 2) a Data Adaptive Graph Generation (DAGG) module to infer the inter-dependencies among different traffic series automatically. We further propose an Adaptive Graph Convolutional Recurrent Network (AGCRN) to capture fine-grained spatial and temporal correlations in traffic series automatically based on the two modules and recurrent networks. Our experiments on two real-world traffic datasets show AGCRN outperforms state-of-the-art by a significant margin without pre-defined graphs about spatial connections.
Learning graph generative models is a challenging task for deep learning and has wide applicability to a range of domains like chemistry, biology and social science. However current deep neural methods suffer from limited scalability: for a graph with $n$ nodes and $m$ edges, existing deep neural methods require $\Omega(n^2)$ complexity by building up the adjacency matrix. On the other hand, many real world graphs are actually sparse in the sense that $m\ll n^2$. Based on this, we develop a novel autoregressive model, named BiGG, that utilizes this sparsity to avoid generating the full adjacency matrix, and importantly reduces the graph generation time complexity to $O((n + m)\log n)$. Furthermore, during training this autoregressive model can be parallelized with $O(\log n)$ synchronization stages, which makes it much more efficient than other autoregressive models that require $\Omega(n)$. Experiments on several benchmarks show that the proposed approach not only scales to orders of magnitude larger graphs than previously possible with deep autoregressive graph generative models, but also yields better graph generation quality.
Graph neural networks (GNNs) have been demonstrated to be powerful in modeling graph-structured data. However, training GNNs usually requires abundant task-specific labeled data, which is often arduously expensive to obtain. One effective way to reduce the labeling effort is to pre-train an expressive GNN model on unlabeled data with self-supervision and then transfer the learned model to downstream tasks with only a few labels. In this paper, we present the GPT-GNN framework to initialize GNNs by generative pre-training. GPT-GNN introduces a self-supervised attributed graph generation task to pre-train a GNN so that it can capture the structural and semantic properties of the graph. We factorize the likelihood of the graph generation into two components: 1) Attribute Generation and 2) Edge Generation. By modeling both components, GPT-GNN captures the inherent dependency between node attributes and graph structure during the generative process. Comprehensive experiments on the billion-scale Open Academic Graph and Amazon recommendation data demonstrate that GPT-GNN significantly outperforms state-of-the-art GNN models without pre-training by up to 9.1% across various downstream tasks.
Malware threat intelligence uncovers deep information about malware, threat actors, and their tactics, Indicators of Compromise(IoC), and vulnerabilities in different platforms from scattered threat sources. This collective information can guide decision making in cyber defense applications utilized by security operation centers(SoCs). In this paper, we introduce an open-source malware ontology - MALOnt that allows the structured extraction of information and knowledge graph generation, especially for threat intelligence. The knowledge graph that uses MALOnt is instantiated from a corpus comprising hundreds of annotated malware threat reports. The knowledge graph enables the analysis, detection, classification, and attribution of cyber threats caused by malware. We also demonstrate the annotation process using MALOnt on exemplar threat intelligence reports. A work in progress, this research is part of a larger effort towards auto-generation of knowledge graphs (KGs)for gathering malware threat intelligence from heterogeneous online resources.
Generating molecular graphs with desired chemical properties driven by deep graph generative models provides a very promising way to accelerate drug discovery process. Such graph generative models usually consist of two steps: learning latent representations and generation of molecular graphs. However, to generate novel and chemically-valid molecular graphs from latent representations is very challenging because of the chemical constraints and combinatorial complexity of molecular graphs. In this paper, we propose MoFlow, a flow-based graph generative model to learn invertible mappings between molecular graphs and their latent representations. To generate molecular graphs, our MoFlow first generates bonds (edges) through a Glow based model, then generates atoms (nodes) given bonds by a novel graph conditional flow, and finally assembles them into a chemically valid molecular graph with a posthoc validity correction. Our MoFlow has merits including exact and tractable likelihood training, efficient one-pass embedding and generation, chemical validity guarantees, 100\% reconstruction of training data, and good generalization ability. We validate our model by four tasks: molecular graph generation and reconstruction, visualization of the continuous latent space, property optimization, and constrained property optimization. Our MoFlow achieves state-of-the-art performance, which implies its potential efficiency and effectiveness to explore large chemical space for drug discovery.
Recently, graph-based algorithms have drawn much attention because of their impressive success in semi-supervised setups. For better model performance, previous studies learn to transform the topology of the input graph. However, these works only focus on optimizing the original nodes and edges, leaving the direction of augmenting existing data unexplored. In this paper, by simulating the generation process of graph signals, we propose a novel heuristic pre-processing technique, namely ELectoral COllege (ELCO), which automatically expands new nodes and edges to refine the label similarity within a dense subgraph. Substantially enlarging the original training set with high-quality generated labeled data, our framework can effectively benefit downstream models. To justify the generality and practicality of ELCO, we couple it with the popular Graph Convolution Network and Graph Attention Network to perform extensive evaluations on three standard datasets. In all setups tested, our method boosts the average score of base models by a large margin of 4.7 points, as well as consistently outperforms the state-of-the-art. We release our code and data on https://github.com/RingBDStack/ELCO to guarantee reproducibility.
Disentangled representation learning has recently attracted a significant amount of attention, particularly in the field of image representation learning. However, learning the disentangled representations behind a graph remains largely unexplored, especially for the attributed graph with both node and edge features. Disentanglement learning for graph generation has substantial new challenges including 1) the lack of graph deconvolution operations to jointly decode node and edge attributes; and 2) the difficulty in enforcing the disentanglement among latent factors that respectively influence: i) only nodes, ii) only edges, and iii) joint patterns between them. To address these challenges, we propose a new disentanglement enhancement framework for deep generative models for attributed graphs. In particular, a novel variational objective is proposed to disentangle the above three types of latent factors, with novel architecture for node and edge deconvolutions. Moreover, within each type, individual-factor-wise disentanglement is further enhanced, which is shown to be a generalization of the existing framework for images. Qualitative and quantitative experiments on both synthetic and real-world datasets demonstrate the effectiveness of the proposed model and its extensions.
Two important tasks at the intersection of knowledge graphs and natural language processing are graph-to-text (G2T) and text-to-graph (T2G) conversion. Due to the difficulty and high cost of data collection, the supervised data available in the two fields are usually on the magnitude of tens of thousands, for example, 18K in the WebNLG~2017 dataset after preprocessing, which is far fewer than the millions of data for other tasks such as machine translation. Consequently, deep learning models for G2T and T2G suffer largely from scarce training data. We present CycleGT, an unsupervised training method that can bootstrap from fully non-parallel graph and text data, and iteratively back translate between the two forms. Experiments on WebNLG datasets show that our unsupervised model trained on the same number of data achieves performance on par with several fully supervised models. Further experiments on the non-parallel GenWiki dataset verify that our method performs the best among unsupervised baselines. This validates our framework as an effective approach to overcome the data scarcity problem in the fields of G2T and T2G. Our code is available at https://github.com/QipengGuo/CycleGT.
The recent deep generative models for static graphs that are now being actively developed have achieved significant success in areas such as molecule design. However, many real-world problems involve temporal graphs whose topology and attribute values evolve dynamically over time, including important applications such as protein folding, human mobility networks, and social network growth. As yet, deep generative models for temporal graphs are not yet well understood and existing techniques for static graphs are not adequate for temporal graphs since they cannot 1) encode and decode continuously-varying graph topology chronologically, 2) enforce validity via temporal constraints, or 3) ensure efficiency for information-lossless temporal resolution. To address these challenges, we propose a new model, called ``Temporal Graph Generative Adversarial Network'' (TG-GAN) for continuous-time temporal graph generation, by modeling the deep generative process for truncated temporal random walks and their compositions. Specifically, we first propose a novel temporal graph generator that jointly model truncated edge sequences, time budgets, and node attributes, with novel activation functions that enforce temporal validity constraints under recurrent architecture. In addition, a new temporal graph discriminator is proposed, which combines time and node encoding operations over a recurrent architecture to distinguish the generated sequences from the real ones sampled by a newly-developed truncated temporal random walk sampler. Extensive experiments on both synthetic and real-world datasets demonstrate TG-GAN significantly outperforms the comparison methods in efficiency and effectiveness.
Scene graph generation (SGG) aims to predict graph-structured descriptions of input images, in the form of objects and relationships between them. This task is becoming increasingly useful for progress at the interface of vision and language. Here, it is important - yet challenging - to perform well on novel (zero-shot) or rare (few-shot) compositions of objects and relationships. In this paper, we identify two key issues that limit such generalization. Firstly, we show that the standard loss used in this task is unintentionally a function of scene graph density. This leads to the neglect of individual edges in large sparse graphs during training, even though these contain diverse few-shot examples that are important for generalization. Secondly, the frequency of relationships can create a strong bias in this task, such that a blind model predicting the most frequent relationship achieves good performance. Consequently, some state-of-the-art models exploit this bias to improve results. We show that such models can suffer the most in their ability to generalize to rare compositions, evaluating two different models on the Visual Genome dataset and its more recent, improved version, GQA. To address these issues, we introduce a density-normalized edge loss, which provides more than a two-fold improvement in certain generalization metrics. Compared to other works in this direction, our enhancements require only a few lines of code and no added computational cost. We also highlight the difficulty of accurately evaluating models using existing metrics, especially on zero/few shots, and introduce a novel weighted metric.
The extraction of a scene graph with objects as nodes and mutual relationships as edges is the basis for a deep understanding of image content. Despite recent advances, such as message passing and joint classification, the detection of visual relationships remains a challenging task due to sub-optimal exploration of the mutual interaction among the visual objects. In this work, we propose a novel transformer formulation for scene graph generation and relation prediction. We leverage the encoder-decoder architecture of the transformer for rich feature embedding of nodes and edges. Specifically, we model the node-to-node interaction with the self-attention of the transformer encoder and the edge-to-node interaction with the cross-attention of the transformer decoder. Further, we introduce a novel positional embedding suitable to handle edges in the decoder. Finally, our relation prediction module classifies the directed relation from the learned node and edge embedding. We name this architecture as Relation Transformer Network (RTN). On the Visual Genome and GQA dataset, we have achieved an overall mean of 4.85% and 3.1% point improvement in comparison with state-of-the-art methods. Our experiments show that Relation Transformer can efficiently model context across various datasets with small, medium, and large-scale relation classification.
Scene graph generation (SGG) aims to detect objects in an image along with their pairwise relationships. There are three key properties of scene graph that have been underexplored in recent works: namely, the edge direction information, the difference in priority between nodes, and the long-tailed distribution of relationships. Accordingly, in this paper, we propose a Graph Property Sensing Network (GPS-Net) that fully explores these three properties for SGG. First, we propose a novel message passing module that augments the node feature with node-specific contextual information and encodes the edge direction information via a tri-linear model. Second, we introduce a node priority sensitive loss to reflect the difference in priority between nodes during training. This is achieved by designing a mapping function that adjusts the focusing parameter in the focal loss. Third, since the frequency of relationships is affected by the long-tailed distribution problem, we mitigate this issue by first softening the distribution and then enabling it to be adjusted for each subject-object pair according to their visual appearance. Systematic experiments demonstrate the effectiveness of the proposed techniques. Moreover, GPS-Net achieves state-of-the-art performance on three popular databases: VG, OI, and VRD by significant gains under various settings and metrics. The code and models are available at \url{https://github.com/taksau/GPS-Net}.
Learning generative models for graph-structured data is challenging because graphs are discrete, combinatorial, and the underlying data distribution is invariant to the ordering of nodes. However, most of the existing generative models for graphs are not invariant to the chosen ordering, which might lead to an undesirable bias in the learned distribution. To address this difficulty, we propose a permutation invariant approach to modeling graphs, using the recent framework of score-based generative modeling. In particular, we design a permutation equivariant, multi-channel graph neural network to model the gradient of the data distribution at the input graph (a.k.a., the score function). This permutation equivariant model of gradients implicitly defines a permutation invariant distribution for graphs. We train this graph neural network with score matching and sample from it with annealed Langevin dynamics. In our experiments, we first demonstrate the capacity of this new architecture in learning discrete graph algorithms. For graph generation, we find that our learning approach achieves better or comparable results to existing models on benchmark datasets.