This short paper reports the method and the evaluation results of Casio and Shinshu University joint team for the ISBI Challenge 2017 - Skin Lesion Analysis Towards Melanoma Detection - Part 3: Lesion Classification hosted by ISIC. Our online validation score was 0.958 with melanoma classifier AUC 0.924 and seborrheic keratosis classifier AUC 0.993.
Deep learning has achieved great success as a powerful classification tool and also made great progress in sematic segmentation. As a result, many researchers also believe that deep learning is the most powerful tool for pixel level image segmentation. Could deep learning achieve the same pixel level accuracy as traditional image segmentation techniques by mapping the features of the object into a non-linear function? This paper gives a short survey of the accuracies achieved by deep learning so far in image classification and image segmentation. Compared to the high accuracies achieved by deep learning in classifying limited categories in international vision challenges, the image segmentation accuracies achieved by deep learning in the same challenges are only about eighty percent. On the contrary, the image segmentation accuracies achieved in international biomedical challenges are close to ninty five percent. Why the difference is so big? Since the accuracies of the competitors methods are only evaluated based on their submitted results instead of reproducing the results by submitting the source codes or the software, are the achieved accuracies verifiable or overhyped? We are going to find it out by analyzing the working principle of deep learning. Finally, we compared the accuracies of state of the art deep learning methods with a threshold selection method quantitatively. Experimental results showed that the threshold selection method could achieve significantly higher accuracy than deep learning methods in image segmentation.
We consider the problem of classifying a medical image dataset when we have a limited amounts of labels. This is very common yet challenging setting as labelled data is expensive, time consuming to collect and may require expert knowledge. The current classification go-to of deep supervised learning is unable to cope with such a problem setup. However, using semi-supervised learning, one can produce accurate classifications using a significantly reduced amount of labelled data. Therefore, semi-supervised learning is perfectly suited for medical image classification. However, there has almost been no uptake of semi-supervised methods in the medical domain. In this work, we propose an all-in-one framework for deep semi-supervised classification focusing on graph based approaches, which up to our knowledge it is the first time that an approach with minimal labels has been shown to such an unprecedented scale with medical data. We introduce the concept of hybrid models by defining a classifier as a combination between an energy-based model and a deep net. Our energy functional is built on the Dirichlet energy based on the graph p-Laplacian. Our framework includes energies based on the $\ell_1$ and $\ell_2$ norms. We then connected this energy model to a deep net to generate a much richer feature space to construct a stronger graph. Our framework can be set to be adapted to any complex dataset. We demonstrate, through extensive numerical comparisons, that our approach readily compete with fully-supervised state-of-the-art techniques for the applications of Malaria Cells, Mammograms and Chest X-ray classification whilst using only 20% of labels.
In recent years, convolutional neural networks (CNNs) have become deeper in order to achieve better classification accuracy in image classification. However, it is difficult to deploy the state-of-the-art deep CNNs for industrial use due to the difficulty of manually fine-tuning the hyperparameters and the trade-off between classification accuracy and computational cost. This paper proposes a novel multi-objective optimization method for evolving state-of-the-art deep CNNs in real-life applications, which automatically evolves the non-dominant solutions at the Pareto front. Three major contributions are made: Firstly, a new encoding strategy is designed to encode one of the best state-of-the-art CNNs; With the classification accuracy and the number of floating point operations as the two objectives, a multi-objective particle swarm optimization method is developed to evolve the non-dominant solutions; Last but not least, a new infrastructure is designed to boost the experiments by concurrently running the experiments on multiple GPUs across multiple machines, and a Python library is developed and released to manage the infrastructure. The experimental results demonstrate that the non-dominant solutions found by the proposed algorithm form a clear Pareto front, and the proposed infrastructure is able to almost linearly reduce the running time.
The application of deep learning techniques using convolutional neural networks to the classification of particle collisions in High Energy Physics is explored. An intuitive approach to transform physical variables, like momenta of particles and jets, into a single image that captures the relevant information, is proposed. The idea is tested using a well known deep learning framework on a simulation dataset, including leptonic ttbar events and the corresponding background at 7 TeV from the CMS experiment at LHC, available as Open Data. This initial test shows competitive results when compared to more classical approaches, like those using feedforward neural networks.
In order to classify the nonlinear feature with linear classifier and improve the classification accuracy, a deep learning network named kernel principal component analysis network (KPCANet) is proposed. First, mapping the data into higher space with kernel principal component analysis to make the data linearly separable. Then building a two-layer KPCANet to obtain the principal components of image. Finally, classifying the principal components with linearly classifier. Experimental results show that the proposed KPCANet is effective in face recognition, object recognition and hand-writing digits recognition, it also outperforms principal component analysis network (PCANet) generally as well. Besides, KPCANet is invariant to illumination and stable to occlusion and slight deformation.
We present a holistic approach for high resolution image classification that won second place in the ICCV/CVPPA2023 Deep Nutrient Deficiency Challenge. The approach consists of a full pipeline of: 1) data distribution analysis to check potential domain shift, 2) backbone selection for a strong baseline model that scales up for high resolution input, 3) transfer learning that utilizes published pretrained models and continuous fine-tuning on small sub-datasets, 4) data augmentation for the diversity of training data and to prevent overfitting, 5) test-time augmentation to improve the prediction's robustness, and 6) "data soups" that conducts cross-fold model prediction average for smoothened final test results.
In recent years, the rapid development of deep learning has led to a wide range of applications in the field of medical image classification. The variants of neural network models with ever-increasing performance share some commonalities: to try to mitigate overfitting, improve generalization, avoid gradient vanishing and exploding, etc. AlexNet first utilizes the dropout technique to mitigate overfitting and the ReLU activation function to avoid gradient vanishing. Therefore, we focus our discussion on AlexNet, which has contributed greatly to the development of CNNs in 2012. After reviewing over 40 papers, including journal papers and conference papers, we give a narrative on the technical details, advantages, and application areas of AlexNet.
Fine-grained classification is a challenging problem, due to subtle differences among highly-confused categories. Most approaches address this difficulty by learning discriminative representation of individual input image. On the other hand, humans can effectively identify contrastive clues by comparing image pairs. Inspired by this fact, this paper proposes a simple but effective Attentive Pairwise Interaction Network (API-Net), which can progressively recognize a pair of fine-grained images by interaction. Specifically, API-Net first learns a mutual feature vector to capture semantic differences in the input pair. It then compares this mutual vector with individual vectors to generate gates for each input image. These distinct gate vectors inherit mutual context on semantic differences, which allow API-Net to attentively capture contrastive clues by pairwise interaction between two images. Additionally, we train API-Net in an end-to-end manner with a score ranking regularization, which can further generalize API-Net by taking feature priorities into account. We conduct extensive experiments on five popular benchmarks in fine-grained classification. API-Net outperforms the recent SOTA methods, i.e., CUB-200-2011 (90.0%), Aircraft(93.9%), Stanford Cars (95.3%), Stanford Dogs (90.3%), and NABirds (88.1%).
Image classification with neural networks (NNs) is widely used in industrial processes, situations where the model likely encounters unknown objects during deployment, i.e., out-of-distribution (OOD) data. Worryingly, NNs tend to make confident yet incorrect predictions when confronted with OOD data. To increase the models' reliability, they should quantify the uncertainty in their own predictions, communicating when the output should (not) be trusted. Deep ensembles, composed of multiple independent NNs, have been shown to perform strongly but are computationally expensive. Recent research has proposed more efficient NN ensembles, namely the snapshot, batch, and multi-input multi-output ensemble. This study investigates the predictive and uncertainty performance of efficient NN ensembles in the context of image classification for industrial processes. It is the first to provide a comprehensive comparison and it proposes a novel Diversity Quality metric to quantify the ensembles' performance on the in-distribution and OOD sets in one single metric. The results highlight the batch ensemble as a cost-effective and competitive alternative to the deep ensemble. It matches the deep ensemble in both uncertainty and accuracy while exhibiting considerable savings in training time, test time, and memory storage.
Classifying hepatocellular carcinoma (HCC) and intrahepatic cholangiocarcinoma (ICC) is a critical step in treatment selection and prognosis evaluation for patients with liver diseases. Traditional histopathological diagnosis poses challenges in this context. In this study, we introduce a novel polarization and radiomics feature fusion network, which combines polarization features obtained from Mueller matrix images of liver pathological samples with radiomics features derived from corresponding pathological images to classify HCC and ICC. Our fusion network integrates a two-tier fusion approach, comprising early feature-level fusion and late classification-level fusion. By harnessing the strengths of polarization imaging techniques and image feature-based machine learning, our proposed fusion network significantly enhances classification accuracy. Notably, even at reduced imaging resolutions, the fusion network maintains robust performance due to the additional information provided by polarization features, which may not align with human visual perception. Our experimental results underscore the potential of this fusion network as a powerful tool for computer-aided diagnosis of HCC and ICC, showcasing the benefits and prospects of integrating polarization imaging techniques into the current image-intensive digital pathological diagnosis. We aim to contribute this innovative approach to top-tier journals, offering fresh insights and valuable tools in the fields of medical imaging and cancer diagnosis. By introducing polarization imaging into liver cancer classification, we demonstrate its interdisciplinary potential in addressing challenges in medical image analysis, promising advancements in medical imaging and cancer diagnosis.
Microscopic assessment of histopathology images is vital for accurate cancer diagnosis and treatment. Whole Slide Image (WSI) classification and captioning have become crucial tasks in computer-aided pathology. However, microscopic WSI face challenges such as redundant patches and unknown patch positions due to subjective pathologist captures. Moreover, generating automatic pathology captions remains a significant challenge. To address these issues, we introduce a novel GNN-ViTCap framework for classification and caption generation from histopathological microscopic images. First, a visual feature extractor generates patch embeddings. Redundant patches are then removed by dynamically clustering these embeddings using deep embedded clustering and selecting representative patches via a scalar dot attention mechanism. We build a graph by connecting each node to its nearest neighbors in the similarity matrix and apply a graph neural network to capture both local and global context. The aggregated image embeddings are projected into the language model's input space through a linear layer and combined with caption tokens to fine-tune a large language model. We validate our method on the BreakHis and PatchGastric datasets. GNN-ViTCap achieves an F1 score of 0.934 and an AUC of 0.963 for classification, along with a BLEU-4 score of 0.811 and a METEOR score of 0.569 for captioning. Experimental results demonstrate that GNN-ViTCap outperforms state of the art approaches, offering a reliable and efficient solution for microscopy based patient diagnosis.
Deep learning (DL) has exhibited huge potentials for hyperspectral image (HSI) classification due to its powerful nonlinear modeling and end-to-end optimization characteristics. Although the superior performance of DL-based methods has been witnessed, some limitations can still be found. On the one hand, existing DL frameworks usually resorted to first-order statistical features, whereas they rarely considered second-order or higher-order statistical features. On the other hand, the optimization of complex hyperparameters (e.g., the layer number and convolutional kernel size) is time-consuming and a very tough task, making the designed DL framework unexplainable. To overcome these challenges, we propose a novel attention-based second-order pooling network (A-SPN). First, a first-order feature operator is designed to model the spectral–spatial information of HSI. Second, an attention-based second-order pooling (A-SOP) operator is designed to model discriminative and representative features. Finally, a fully connected layer with softmax loss is used for classification. The proposed framework can obtain second-order statistical features in an end-to-end manner. In addition, A-SPN is free of complex hyperparameters tuning, making it more explainable and easily equipped for classification tasks. Experimental results based on three common hyperspectral data sets demonstrate that A-SPN outperforms other traditional and state-of-the-art DL-based HSI classification methods in terms of generalization performance with limited training samples, classification accuracy, convergence rate, and computational complexity.
Image classification is considered, and a hierarchical max-pooling model with additional local pooling is introduced. Here the additional local pooling enables the hierachical model to combine parts of the image which have a variable relative distance towards each other. Various convolutional neural network image classifiers are introduced and compared in view of their rate of convergence. The finite sample size performance of the estimates is analyzed by applying them to simulated and real data.
Remarkable progress has been made in image recognition, primarily due to the availability of large-scale annotated datasets and the revival of deep CNN. CNNs enable learning data-driven, highly representative, layered hierarchical image features from sufficient training data. However, obtaining datasets as comprehensively annotated as ImageNet in the medical imaging domain remains a challenge. There are currently three major techniques that successfully employ CNNs to medical image classification: training the CNN from scratch, using off-the-shelf pre-trained CNN features, and conducting unsupervised CNN pre-training with supervised fine-tuning. Another effective method is transfer learning, i.e., fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. In this paper, we exploit three important, but previously understudied factors of employing deep convolutional neural networks to computer-aided detection problems. We first explore and evaluate different CNN architectures. The studied models contain 5 thousand to 160 million parameters, and vary in numbers of layers. We then evaluate the influence of dataset scale and spatial image context on performance. Finally, we examine when and why transfer learning from pre-trained ImageNet (via fine-tuning) can be useful. We study two specific computer-aided detection (CADe) problems, namely thoraco-abdominal lymph node (LN) detection and interstitial lung disease (ILD) classification. We achieve the state-of-the-art performance on the mediastinal LN detection, with 85% sensitivity at 3 false positive per patient, and report the first five-fold cross-validation classification results on predicting axial CT slices with ILD categories. Our extensive empirical evaluation, CNN model analysis and valuable insights can be extended to the design of high performance CAD systems for other medical imaging tasks.
Due to the high availability of large-scale annotated image datasets, knowledge transfer from pre-trained models showed outstanding performance in medical image classification. However, building a robust image classification model for datasets with data irregularity or imbalanced classes can be a very challenging task, especially in the medical imaging domain. In this paper, we propose a novel deep convolutional neural network, we called Self Supervised Super Sample Decomposition for Transfer learning (4S-DT) model. 4S-DT encourages a coarse-to-fine transfer learning from large-scale image recognition tasks to a specific chest X-ray image classification task using a generic self-supervised sample decomposition approach. Our main contribution is a novel self-supervised learning mechanism guided by a super sample decomposition of unlabelled chest X-ray images. 4S-DT helps in improving the robustness of knowledge transformation via a downstream learning strategy with a class-decomposition layer to simplify the local structure of the data. 4S-DT can deal with any irregularities in the image dataset by investigating its class boundaries using a downstream class-decomposition mechanism. We used 50,000 unlabelled chest X-ray images to achieve our coarse-to-fine transfer learning with an application to COVID-19 detection, as an exemplar. 4S-DT has achieved a high accuracy of 99.8% (95% CI: 99.44%, 99.98%) in the detection of COVID-19 cases on a large dataset and an accuracy of 97.54% (95%$ CI: 96.22%, 98.91%) on an extended test set enriched by augmented images of a small dataset, out of which all real COVID-19 cases were detected, which was the highest accuracy obtained when compared to other methods.
We present a novel latent embedding model for learning a compatibility function between image and class embeddings, in the context of zero-shot classification. The proposed method augments the state-of-the-art bilinear compatibility model by incorporating latent variables. Instead of learning a single bilinear map, it learns a collection of maps with the selection, of which map to use, being a latent variable for the current image-class pair. We train the model with a ranking based objective function which penalizes incorrect rankings of the true class for a given image. We empirically demonstrate that our model improves the state-of-the-art for various class embeddings consistently on three challenging publicly available datasets for the zero-shot setting. Moreover, our method leads to visually highly interpretable results with clear clusters of different fine-grained object properties that correspond to different latent variable maps.
There are a thousand ways to caption an image. Contrastive Language Pretraining (CLIP) on the other hand, works by mapping an image and its caption to a single vector -- limiting how well CLIP-like models can represent the diverse ways to describe an image. In this work, we introduce Llip, Latent Language Image Pretraining, which models the diversity of captions that could match an image. Llip's vision encoder outputs a set of visual features that are mixed into a final representation by conditioning on information derived from the text. We show that Llip outperforms non-contextualized baselines like CLIP and SigLIP on a variety of tasks even with large-scale encoders. Llip improves zero-shot classification by an average of 2.9% zero-shot classification benchmarks with a ViT-G/14 encoder. Specifically, Llip attains a zero-shot top-1 accuracy of 83.5% on ImageNet outperforming a similarly sized CLIP by 1.4%. We also demonstrate improvement on zero-shot retrieval on MS-COCO by 6.0%. We provide a comprehensive analysis of the components introduced by the method and demonstrate that Llip leads to richer visual representations.
Superpixels are higher-order perceptual groups of pixels in an image, often carrying much more information than the raw pixels. There is an inherent relational structure to the relationship among different superpixels of an image such as adjacent superpixels are neighbours of each other. Our interest here is to treat these relative positions of various superpixels as relational information of an image. This relational information can convey higher-order spatial information about the image, such as the relationship between superpixels representing two eyes in an image of a cat. That is, two eyes are placed adjacent to each other in a straight line or the mouth is below the nose. Our motive in this paper is to assist computer vision models, specifically those based on Deep Neural Networks (DNNs), by incorporating this higher-order information from superpixels. We construct a hybrid model that leverages (a) Convolutional Neural Network (CNN) to deal with spatial information in an image and (b) Graph Neural Network (GNN) to deal with relational superpixel information in the image. The proposed model is learned using a generic hybrid loss function. Our experiments are extensive, and we evaluate the predictive performance of our proposed hybrid vision model on seven different image classification datasets from a variety of domains such as digit and object recognition, biometrics, medical imaging. The results demonstrate that the relational superpixel information processed by a GNN can improve the performance of a standard CNN-based vision system.
Skin Cancer is one of the most deathful of all the cancers. It is bound to spread to different parts of the body on the off chance that it is not analyzed and treated at the beginning time. It is mostly because of the abnormal growth of skin cells, often develops when the body is exposed to sunlight. The Detection Furthermore, the characterization of skin malignant growth in the beginning time is a costly and challenging procedure. It is classified where it develops and its cell type. High Precision and recall are required for the classification of lesions. The paper aims to use MNIST HAM-10000 dataset containing dermoscopy images. The objective is to propose a system that detects skin cancer and classifies it in different classes by using the Convolution Neural Network. The diagnosing methodology uses Image processing and deep learning model. The dermoscopy image of skin cancer taken, undergone various techniques to remove the noise and picture resolution. The image count is also increased by using various image augmentation techniques. In the end, the Transfer Learning method is used to increase the classification accuracy of the images further. Our CNN model gave a weighted average Precision of 0.88, a weighted Recall average of 0.74, and a weighted f1-score of 0.77. The transfer learning approach applied using ResNet model yielded an accuracy of 90.51%