A primary challenge in utilizing in-vitro biological neural networks for computations is finding good encoding and decoding schemes for inputting and decoding data to and from the networks. Furthermore, identifying the optimal parameter settings for a given combination of encoding and decoding schemes adds additional complexity to this challenge. In this study we explore stimulation timing as an encoding method, i.e. we encode information as the delay between stimulation pulses and identify the bounds and acuity of stimulation timings which produce linearly separable spike responses. We also examine the optimal readout parameters for a linear decoder in the form of epoch length, time bin size and epoch offset. Our results suggest that stimulation timings between 36 and 436ms may be optimal for encoding and that different combinations of readout parameters may be optimal at different parts of the evoked spike response.
Fine-tuning pre-trained large language models (LLMs) with limited hardware presents challenges due to GPU memory constraints. Various distributed fine-tuning methods have been proposed to alleviate memory constraints on GPU. However, determining the most effective method for achieving rapid fine-tuning while preventing GPU out-of-memory issues in a given environment remains unclear. To address this challenge, we introduce LLMem, a solution that estimates the GPU memory consumption when applying distributed fine-tuning methods across multiple GPUs and identifies the optimal method. We conduct GPU memory usage estimation prior to fine-tuning, leveraging the fundamental structure of transformer-based decoder models and the memory usage distribution of each method. Experimental results show that LLMem accurately estimates peak GPU memory usage on a single GPU, with error rates of up to 1.6%. Additionally, it shows an average error rate of 3.0% when applying distributed fine-tuning methods to LLMs with more than a billion parameters on multi-GPU setups.
Establishing accurate 3D correspondences between shapes stands as a pivotal challenge with profound implications for computer vision and robotics. However, existing self-supervised methods for this problem assume perfect input shape alignment, restricting their real-world applicability. In this work, we introduce a novel self-supervised Rotation-Invariant 3D correspondence learner with Local Shape Transform, dubbed RIST, that learns to establish dense correspondences between shapes even under challenging intra-class variations and arbitrary orientations. Specifically, RIST learns to dynamically formulate an SO(3)-invariant local shape transform for each point, which maps the SO(3)-equivariant global shape descriptor of the input shape to a local shape descriptor. These local shape descriptors are provided as inputs to our decoder to facilitate point cloud self- and cross-reconstruction. Our proposed self-supervised training pipeline encourages semantically corresponding points from different shapes to be mapped to similar local shape descriptors, enabling RIST to establish dense point-wise correspondences. RIST demonstrates state-of-the-art performances on 3D part label transfer and semantic keypoint transfer given arbitrarily rotated point cloud pairs, outperforming existing methods by significant margins.
Video Frame Interpolation (VFI) is a crucial technique in various applications such as slow-motion generation, frame rate conversion, video frame restoration etc. This paper introduces an efficient video frame interpolation framework that aims to strike a favorable balance between efficiency and quality. Our framework follows a general paradigm consisting of a flow estimator and a refinement module, while incorporating carefully designed components. First of all, we adopt depth-wise convolution with large kernels in the flow estimator that simultaneously reduces the parameters and enhances the receptive field for encoding rich context and handling complex motion. Secondly, diverging from a common design for the refinement module with a UNet-structure (encoder-decoder structure), which we find redundant, our decoder-only refinement module directly enhances the result from coarse to fine features, offering a more efficient process. In addition, to address the challenge of handling high-definition frames, we also introduce an innovative HD-aware augmentation strategy during training, leading to consistent enhancement on HD images. Extensive experiments are conducted on diverse datasets, Vimeo90K, UCF101, Xiph and SNU-FILM. The results demonstrate that our approach achieves state-of-the-art performance with clear improvement while requiring much less FLOPs and parameters, reaching to a better spot for balancing efficiency and quality.
The task of video inpainting detection is to expose the pixel-level inpainted regions within a video sequence. Existing methods usually focus on leveraging spatial and temporal inconsistencies. However, these methods typically employ fixed operations to combine spatial and temporal clues, limiting their applicability in different scenarios. In this paper, we introduce a novel Multilateral Temporal-view Pyramid Transformer ({\em MumPy}) that collaborates spatial-temporal clues flexibly. Our method utilizes a newly designed multilateral temporal-view encoder to extract various collaborations of spatial-temporal clues and introduces a deformable window-based temporal-view interaction module to enhance the diversity of these collaborations. Subsequently, we develop a multi-pyramid decoder to aggregate the various types of features and generate detection maps. By adjusting the contribution strength of spatial and temporal clues, our method can effectively identify inpainted regions. We validate our method on existing datasets and also introduce a new challenging and large-scale Video Inpainting dataset based on the YouTube-VOS dataset, which employs several more recent inpainting methods. The results demonstrate the superiority of our method in both in-domain and cross-domain evaluation scenarios.
Methane emissions from livestock, particularly cattle, significantly contribute to climate change. Effective methane emission mitigation strategies are crucial as the global population and demand for livestock products increase. We introduce Gasformer, a novel semantic segmentation architecture for detecting low-flow rate methane emissions from livestock, and controlled release experiments using optical gas imaging. We present two unique datasets captured with a FLIR GF77 OGI camera. Gasformer leverages a Mix Vision Transformer encoder and a Light-Ham decoder to generate multi-scale features and refine segmentation maps. Gasformer outperforms other state-of-the-art models on both datasets, demonstrating its effectiveness in detecting and segmenting methane plumes in controlled and real-world scenarios. On the livestock dataset, Gasformer achieves mIoU of 88.56%, surpassing other state-of-the-art models. Materials are available at: github.com/toqitahamid/Gasformer.
Inductive biases are crucial in disentangled representation learning for narrowing down an underspecified solution set. In this work, we consider endowing a neural network autoencoder with three select inductive biases from the literature: data compression into a grid-like latent space via quantization, collective independence amongst latents, and minimal functional influence of any latent on how other latents determine data generation. In principle, these inductive biases are deeply complementary: they most directly specify properties of the latent space, encoder, and decoder, respectively. In practice, however, naively combining existing techniques instantiating these inductive biases fails to yield significant benefits. To address this, we propose adaptations to the three techniques that simplify the learning problem, equip key regularization terms with stabilizing invariances, and quash degenerate incentives. The resulting model, Tripod, achieves state-of-the-art results on a suite of four image disentanglement benchmarks. We also verify that Tripod significantly improves upon its naive incarnation and that all three of its "legs" are necessary for best performance.
The adoption of Vision Transformers (ViTs) based architectures represents a significant advancement in 3D Medical Image (MI) segmentation, surpassing traditional Convolutional Neural Network (CNN) models by enhancing global contextual understanding. While this paradigm shift has significantly enhanced 3D segmentation performance, state-of-the-art architectures require extremely large and complex architectures with large scale computing resources for training and deployment. Furthermore, in the context of limited datasets, often encountered in medical imaging, larger models can present hurdles in both model generalization and convergence. In response to these challenges and to demonstrate that lightweight models are a valuable area of research in 3D medical imaging, we present SegFormer3D, a hierarchical Transformer that calculates attention across multiscale volumetric features. Additionally, SegFormer3D avoids complex decoders and uses an all-MLP decoder to aggregate local and global attention features to produce highly accurate segmentation masks. The proposed memory efficient Transformer preserves the performance characteristics of a significantly larger model in a compact design. SegFormer3D democratizes deep learning for 3D medical image segmentation by offering a model with 33x less parameters and a 13x reduction in GFLOPS compared to the current state-of-the-art (SOTA). We benchmark SegFormer3D against the current SOTA models on three widely used datasets Synapse, BRaTs, and ACDC, achieving competitive results. Code: https://github.com/OSUPCVLab/SegFormer3D.git
Modern smartphone camera quality heavily relies on the image signal processor (ISP) to enhance captured raw images, utilizing carefully designed modules to produce final output images encoded in a standard color space (e.g., sRGB). Neural-based end-to-end learnable ISPs offer promising advancements, potentially replacing traditional ISPs with their ability to adapt without requiring extensive tuning for each new camera model, as is often the case for nearly every module in traditional ISPs. However, the key challenge with the recent learning-based ISPs is the urge to collect large paired datasets for each distinct camera model due to the influence of intrinsic camera characteristics on the formation of input raw images. This paper tackles this challenge by introducing a novel method for unpaired learning of raw-to-raw translation across diverse cameras. Specifically, we propose Rawformer, an unsupervised Transformer-based encoder-decoder method for raw-to-raw translation. It accurately maps raw images captured by a certain camera to the target camera, facilitating the generalization of learnable ISPs to new unseen cameras. Our method demonstrates superior performance on real camera datasets, achieving higher accuracy compared to previous state-of-the-art techniques, and preserving a more robust correlation between the original and translated raw images. The codes and the pretrained models are available at https://github.com/gosha20777/rawformer.
NeRF-based 3D-aware Generative Adversarial Networks (GANs) like EG3D or GIRAFFE have shown very high rendering quality under large representational variety. However, rendering with Neural Radiance Fields poses challenges for 3D applications: First, the significant computational demands of NeRF rendering preclude its use on low-power devices, such as mobiles and VR/AR headsets. Second, implicit representations based on neural networks are difficult to incorporate into explicit 3D scenes, such as VR environments or video games. 3D Gaussian Splatting (3DGS) overcomes these limitations by providing an explicit 3D representation that can be rendered efficiently at high frame rates. In this work, we present a novel approach that combines the high rendering quality of NeRF-based 3D-aware GANs with the flexibility and computational advantages of 3DGS. By training a decoder that maps implicit NeRF representations to explicit 3D Gaussian Splatting attributes, we can integrate the representational diversity and quality of 3D GANs into the ecosystem of 3D Gaussian Splatting for the first time. Additionally, our approach allows for a high resolution GAN inversion and real-time GAN editing with 3D Gaussian Splatting scenes. Project page: florian-barthel.github.io/gaussian_decoder
Automatically condensing multiple topic-related scientific papers into a succinct and concise summary is referred to as Multi-Document Scientific Summarization (MDSS). Currently, while commonly used abstractive MDSS methods can generate flexible and coherent summaries, the difficulty in handling global information and the lack of guidance during decoding still make it challenging to generate better summaries. To alleviate these two shortcomings, this paper introduces summary candidates into MDSS, utilizing the global information of the document set and additional guidance from the summary candidates to guide the decoding process. Our insights are twofold: Firstly, summary candidates can provide instructive information from both positive and negative perspectives, and secondly, selecting higher-quality candidates from multiple options contributes to producing better summaries. Drawing on the insights, we propose a summary candidates fusion framework -- Disentangling Instructive information from Ranked candidates (DIR) for MDSS. Specifically, DIR first uses a specialized pairwise comparison method towards multiple candidates to pick out those of higher quality. Then DIR disentangles the instructive information of summary candidates into positive and negative latent variables with Conditional Variational Autoencoder. These variables are further incorporated into the decoder to guide generation. We evaluate our approach with three different types of Transformer-based models and three different types of candidates, and consistently observe noticeable performance improvements according to automatic and human evaluation. More analyses further demonstrate the effectiveness of our model in handling global information and enhancing decoding controllability.
In the last few years, the research interest in Vision-and-Language Navigation (VLN) has grown significantly. VLN is a challenging task that involves an agent following human instructions and navigating in a previously unknown environment to reach a specified goal. Recent work in literature focuses on different ways to augment the available datasets of instructions for improving navigation performance by exploiting synthetic training data. In this work, we propose AIGeN, a novel architecture inspired by Generative Adversarial Networks (GANs) that produces meaningful and well-formed synthetic instructions to improve navigation agents' performance. The model is composed of a Transformer decoder (GPT-2) and a Transformer encoder (BERT). During the training phase, the decoder generates sentences for a sequence of images describing the agent's path to a particular point while the encoder discriminates between real and fake instructions. Experimentally, we evaluate the quality of the generated instructions and perform extensive ablation studies. Additionally, we generate synthetic instructions for 217K trajectories using AIGeN on Habitat-Matterport 3D Dataset (HM3D) and show an improvement in the performance of an off-the-shelf VLN method. The validation analysis of our proposal is conducted on REVERIE and R2R and highlights the promising aspects of our proposal, achieving state-of-the-art performance.
In the context of increasing demands for long-term multi-energy load forecasting in real-world applications, this paper introduces Patchformer, a novel model that integrates patch embedding with encoder-decoder Transformer-based architectures. To address the limitation in existing Transformer-based models, which struggle with intricate temporal patterns in long-term forecasting, Patchformer employs patch embedding, which predicts multivariate time-series data by separating it into multiple univariate data and segmenting each of them into multiple patches. This method effectively enhances the model's ability to capture local and global semantic dependencies. The numerical analysis shows that the Patchformer obtains overall better prediction accuracy in both multivariate and univariate long-term forecasting on the novel Multi-Energy dataset and other benchmark datasets. In addition, the positive effect of the interdependence among energy-related products on the performance of long-term time-series forecasting across Patchformer and other compared models is discovered, and the superiority of the Patchformer against other models is also demonstrated, which presents a significant advancement in handling the interdependence and complexities of long-term multi-energy forecasting. Lastly, Patchformer is illustrated as the only model that follows the positive correlation between model performance and the length of the past sequence, which states its ability to capture long-range past local semantic information.
Chart parsing poses a significant challenge due to the diversity of styles, values, texts, and so forth. Even advanced large vision-language models (LVLMs) with billions of parameters struggle to handle such tasks satisfactorily. To address this, we propose OneChart: a reliable agent specifically devised for the structural extraction of chart information. Similar to popular LVLMs, OneChart incorporates an autoregressive main body. Uniquely, to enhance the reliability of the numerical parts of the output, we introduce an auxiliary token placed at the beginning of the total tokens along with an additional decoder. The numerically optimized (auxiliary) token allows subsequent tokens for chart parsing to capture enhanced numerical features through causal attention. Furthermore, with the aid of the auxiliary token, we have devised a self-evaluation mechanism that enables the model to gauge the reliability of its chart parsing results by providing confidence scores for the generated content. Compared to current state-of-the-art (SOTA) chart parsing models, e.g., DePlot, ChartVLM, ChartAst, OneChart significantly outperforms in Average Precision (AP) for chart structural extraction across multiple public benchmarks, despite enjoying only 0.2 billion parameters. Moreover, as a chart parsing agent, it also brings 10%+ accuracy gains for the popular LVLM (LLaVA-1.6) in the downstream ChartQA benchmark.
Automated segmentation is a fundamental medical image analysis task, which enjoys significant advances due to the advent of deep learning. While foundation models have been useful in natural language processing and some vision tasks for some time, the foundation model developed with image segmentation in mind - Segment Anything Model (SAM) - has been developed only recently and has shown similar promise. However, there are still no systematic analyses or "best-practice" guidelines for optimal fine-tuning of SAM for medical image segmentation. This work summarizes existing fine-tuning strategies with various backbone architectures, model components, and fine-tuning algorithms across 18 combinations, and evaluates them on 17 datasets covering all common radiology modalities. Our study reveals that (1) fine-tuning SAM leads to slightly better performance than previous segmentation methods, (2) fine-tuning strategies that use parameter-efficient learning in both the encoder and decoder are superior to other strategies, (3) network architecture has a small impact on final performance, (4) further training SAM with self-supervised learning can improve final model performance. We also demonstrate the ineffectiveness of some methods popular in the literature and further expand our experiments into few-shot and prompt-based settings. Lastly, we released our code and MRI-specific fine-tuned weights, which consistently obtained superior performance over the original SAM, at https://github.com/mazurowski-lab/finetune-SAM.
This paper describes AssemblyAI's industrial-scale automatic speech recognition (ASR) system, designed to meet the requirements of large-scale, multilingual ASR serving various application needs. Our system leverages a diverse training dataset comprising unsupervised (12.5M hours), supervised (188k hours), and pseudo-labeled (1.6M hours) data across four languages. We provide a detailed description of our model architecture, consisting of a full-context 600M-parameter Conformer encoder pre-trained with BEST-RQ and an RNN-T decoder fine-tuned jointly with the encoder. Our extensive evaluation demonstrates competitive word error rates (WERs) against larger and more computationally expensive models, such as Whisper large and Canary-1B. Furthermore, our architectural choices yield several key advantages, including an improved code-switching capability, a 5x inference speedup compared to an optimized Whisper baseline, a 30% reduction in hallucination rate on speech data, and a 90% reduction in ambient noise compared to Whisper, along with significantly improved time-stamp accuracy. Throughout this work, we adopt a system-centric approach to analyzing various aspects of fully-fledged ASR models to gain practically relevant insights useful for real-world services operating at scale.
Previous works of negation understanding mainly focus on negation cue detection and scope resolution, without identifying negation subject which is also significant to the downstream tasks. In this paper, we propose a new negation triplet extraction (NTE) task which aims to extract negation subject along with negation cue and scope. To achieve NTE, we devise a novel Syntax&Semantic-Enhanced Negation Extraction model, namely SSENE, which is built based on a generative pretrained language model (PLM) {of Encoder-Decoder architecture} with a multi-task learning framework. Specifically, the given sentence's syntactic dependency tree is incorporated into the PLM's encoder to discover the correlations between the negation subject, cue and scope. Moreover, the semantic consistency between the sentence and the extracted triplet is ensured by an auxiliary task learning. Furthermore, we have constructed a high-quality Chinese dataset NegComment based on the users' reviews from the real-world platform of Meituan, upon which our evaluations show that SSENE achieves the best NTE performance compared to the baselines. Our ablation and case studies also demonstrate that incorporating the syntactic information helps the PLM's recognize the distant dependency between the subject and cue, and the auxiliary task learning is helpful to extract the negation triplets with more semantic consistency.
The task of Split and Rephrase, which splits a complex sentence into multiple simple sentences with the same meaning, improves readability and enhances the performance of downstream tasks in natural language processing (NLP). However, while Split and Rephrase can be improved using a text-to-text generation approach that applies encoder-decoder models fine-tuned with a large-scale dataset, it still suffers from hallucinations and under-splitting. To address these issues, this paper presents a simple and strong data refinement approach. Here, we create WikiSplit++ by removing instances in WikiSplit where complex sentences do not entail at least one of the simpler sentences and reversing the order of reference simple sentences. Experimental results show that training with WikiSplit++ leads to better performance than training with WikiSplit, even with fewer training instances. In particular, our approach yields significant gains in the number of splits and the entailment ratio, a proxy for measuring hallucinations.
Optimal transport (OT) and the related Wasserstein metric (W) are powerful and ubiquitous tools for comparing distributions. However, computing pairwise Wasserstein distances rapidly becomes intractable as cohort size grows. An attractive alternative would be to find an embedding space in which pairwise Euclidean distances map to OT distances, akin to standard multidimensional scaling (MDS). We present Wasserstein Wormhole, a transformer-based autoencoder that embeds empirical distributions into a latent space wherein Euclidean distances approximate OT distances. Extending MDS theory, we show that our objective function implies a bound on the error incurred when embedding non-Euclidean distances. Empirically, distances between Wormhole embeddings closely match Wasserstein distances, enabling linear time computation of OT distances. Along with an encoder that maps distributions to embeddings, Wasserstein Wormhole includes a decoder that maps embeddings back to distributions, allowing for operations in the embedding space to generalize to OT spaces, such as Wasserstein barycenter estimation and OT interpolation. By lending scalability and interpretability to OT approaches, Wasserstein Wormhole unlocks new avenues for data analysis in the fields of computational geometry and single-cell biology.
Camouflaged object detection (COD) remains a challenging task in computer vision. Existing methods often resort to additional branches for edge supervision, incurring substantial computational costs. To address this, we propose the Co-Supervised Spotlight Shifting Network (CS$^3$Net), a compact single-branch framework inspired by how shifting light source exposes camouflage. Our spotlight shifting strategy replaces multi-branch designs by generating supervisory signals that highlight boundary cues. Within CS$^3$Net, a Projection Aware Attention (PAA) module is devised to strengthen feature extraction, while the Extended Neighbor Connection Decoder (ENCD) enhances final predictions. Extensive experiments on public datasets demonstrate that CS$^3$Net not only achieves superior performance, but also reduces Multiply-Accumulate operations (MACs) by 32.13% compared to state-of-the-art COD methods, striking an optimal balance between efficiency and effectiveness.