Scene Graph Generation (SGG) is a challenging task of detecting objects and predicting relationships between objects. After DETR was developed, one-stage SGG models based on a one-stage object detector have been actively studied. However, complex modeling is used to predict the relationship between objects, and the inherent relationship between object queries learned in the multi-head self-attention of the object detector has been neglected. We propose a lightweight one-stage SGG model that extracts the relation graph from the various relationships learned in the multi-head self-attention layers of the DETR decoder. By fully utilizing the self-attention by-products, the relation graph can be extracted effectively with a shallow relation extraction head. Considering the dependency of the relation extraction task on the object detection task, we propose a novel relation smoothing technique that adjusts the relation label adaptively according to the quality of the detected objects. By the relation smoothing, the model is trained according to the continuous curriculum that focuses on object detection task at the beginning of training and performs multi-task learning as the object detection performance gradually improves. Furthermore, we propose a connectivity prediction task that predicts whether a relation exists between object pairs as an auxiliary task of the relation extraction. We demonstrate the effectiveness and efficiency of our method for the Visual Genome and Open Image V6 datasets. Our code is publicly available at https://github.com/naver-ai/egtr.
Relation extraction is essential for extracting and understanding biographical information in the context of digital humanities and related subjects. There is a growing interest in the community to build datasets capable of training machine learning models to extract relationships. However, annotating such datasets can be expensive and time-consuming, in addition to being limited to English. This paper applies guided distant supervision to create a large biographical relationship extraction dataset for German. Our dataset, composed of more than 80,000 instances for nine relationship types, is the largest biographical German relationship extraction dataset. We also create a manually annotated dataset with 2000 instances to evaluate the models and release it together with the dataset compiled using guided distant supervision. We train several state-of-the-art machine learning models on the automatically created dataset and release them as well. Furthermore, we experiment with multilingual and cross-lingual experiments that could benefit many low-resource languages.
Natural language processing (NLP) practitioners are leveraging large language models (LLM) to create structured datasets from semi-structured and unstructured data sources such as patents, papers, and theses, without having domain-specific knowledge. At the same time, ecological experts are searching for a variety of means to preserve biodiversity. To contribute to these efforts, we focused on endangered species and through in-context learning, we distilled knowledge from GPT-4. In effect, we created datasets for both named entity recognition (NER) and relation extraction (RE) via a two-stage process: 1) we generated synthetic data from GPT-4 of four classes of endangered species, 2) humans verified the factual accuracy of the synthetic data, resulting in gold data. Eventually, our novel dataset contains a total of 3.6K sentences, evenly divided between 1.8K NER and 1.8K RE sentences. The constructed dataset was then used to fine-tune both general BERT and domain-specific BERT variants, completing the knowledge distillation process from GPT-4 to BERT, because GPT-4 is resource intensive. Experiments show that our knowledge transfer approach is effective at creating a NER model suitable for detecting endangered species from texts.
Relation extraction is a critical task in the field of natural language processing with numerous real-world applications. Existing research primarily focuses on monolingual relation extraction or cross-lingual enhancement for relation extraction. Yet, there remains a significant gap in understanding relation extraction in the mix-lingual (or code-switching) scenario, where individuals intermix contents from different languages within sentences, generating mix-lingual content. Due to the lack of a dedicated dataset, the effectiveness of existing relation extraction models in such a scenario is largely unexplored. To address this issue, we introduce a novel task of considering relation extraction in the mix-lingual scenario called MixRE and constructing the human-annotated dataset MixRED to support this task. In addition to constructing the MixRED dataset, we evaluate both state-of-the-art supervised models and large language models (LLMs) on MixRED, revealing their respective advantages and limitations in the mix-lingual scenario. Furthermore, we delve into factors influencing model performance within the MixRE task and uncover promising directions for enhancing the performance of both supervised models and LLMs in this novel task.
The substantial interest in updating Large Language Models (LLMs) without retraining from scratch is accompanied by several challenges. This is particularly true when updating LLMs with datasets that necessitate domain-expert reasoning across extensive texts, despite limited samples. We termed the scenario as the Few-Shot Domain-Expert Reasoning for Updating LLMs (FDoR-UL). Traditional methods such as Low-Rank Adaptation (LoRA) and Retrieval Augmented Generation (RAG) are inadequate for addressing this critical issue, particularly evident in our exploration of a specific medical dataset that epitomizes the distinct needs of FDoR-UL. To tackle this challenge, we introduce a Sequential Fusion method to integrate knowledge from complex contexts into LLMs. This method employs a two-stage framework: initially leveraging general LLMs to perform relation extraction for knowledge acquisition from complex texts, followed by updating domain-specific LLMs through Knowledge Editing (KE). Employing our method, domain-specific LLMs achieved a 71.7% accuracy (an average gain of 39.1%) in question-answering tasks. Furthermore, we expanded our evaluation to a novel economics-management dataset we developed, where our method achieved a 75.0% accuracy (an average gain of 45.0%). These findings underscore the effectiveness and flexibility of our approach in FDoR-UL across various domains.
The process of cyber mapping gives insights in relationships among financial entities and service providers. Centered around the outsourcing practices of companies within fund prospectuses in Germany, we introduce a dataset specifically designed for named entity recognition and relation extraction tasks. The labeling process on 948 sentences was carried out by three experts which yields to 5,969 annotations for four entity types (Outsourcing, Company, Location and Software) and 4,102 relation annotations (Outsourcing-Company, Company-Location). State-of-the-art deep learning models were trained to recognize entities and extract relations showing first promising results. An anonymized version of the dataset, along with guidelines and the code used for model training, are publicly available at https://www.dfki.uni-kl.de/cybermapping/data/CO-Fun-1.0-anonymized.zip.
Event temporal relation (TempRel) is a primary subject of the event relation extraction task. However, the inherent ambiguity of TempRel increases the difficulty of the task. With the rise of prompt engineering, it is important to design effective prompt templates and verbalizers to extract relevant knowledge. The traditional manually designed templates struggle to extract precise temporal knowledge. This paper introduces a novel retrieval-augmented TempRel extraction approach, leveraging knowledge retrieved from large language models (LLMs) to enhance prompt templates and verbalizers. Our method capitalizes on the diverse capabilities of various LLMs to generate a wide array of ideas for template and verbalizer design. Our proposed method fully exploits the potential of LLMs for generation tasks and contributes more knowledge to our design. Empirical evaluations across three widely recognized datasets demonstrate the efficacy of our method in improving the performance of event temporal relation extraction tasks.
Natural Language Processing (NLP) plays a pivotal role in the realm of Digital Humanities (DH) and serves as the cornerstone for advancing the structural analysis of historical and cultural heritage texts. This is particularly true for the domains of named entity recognition (NER) and relation extraction (RE). In our commitment to expediting ancient history and culture, we present the ``Chinese Historical Information Extraction Corpus''(CHisIEC). CHisIEC is a meticulously curated dataset designed to develop and evaluate NER and RE tasks, offering a resource to facilitate research in the field. Spanning a remarkable historical timeline encompassing data from 13 dynasties spanning over 1830 years, CHisIEC epitomizes the extensive temporal range and text heterogeneity inherent in Chinese historical documents. The dataset encompasses four distinct entity types and twelve relation types, resulting in a meticulously labeled dataset comprising 14,194 entities and 8,609 relations. To establish the robustness and versatility of our dataset, we have undertaken comprehensive experimentation involving models of various sizes and paradigms. Additionally, we have evaluated the capabilities of Large Language Models (LLMs) in the context of tasks related to ancient Chinese history. The dataset and code are available at \url{https://github.com/tangxuemei1995/CHisIEC}.
Large Language Models (LLMs) have demonstrated exceptional abilities in comprehending and generating text, motivating numerous researchers to utilize them for Information Extraction (IE) purposes, including Relation Extraction (RE). Nonetheless, most existing methods are predominantly designed for Sentence-level Relation Extraction (SentRE) tasks, which typically encompass a restricted set of relations and triplet facts within a single sentence. Furthermore, certain approaches resort to treating relations as candidate choices integrated into prompt templates, leading to inefficient processing and suboptimal performance when tackling Document-Level Relation Extraction (DocRE) tasks, which entail handling multiple relations and triplet facts distributed across a given document, posing distinct challenges. To overcome these limitations, we introduce AutoRE, an end-to-end DocRE model that adopts a novel RE extraction paradigm named RHF (Relation-Head-Facts). Unlike existing approaches, AutoRE does not rely on the assumption of known relation options, making it more reflective of real-world scenarios. Additionally, we have developed an easily extensible RE framework using a Parameters Efficient Fine Tuning (PEFT) algorithm (QLoRA). Our experiments on the RE-DocRED dataset showcase AutoRE's best performance, achieving state-of-the-art results, surpassing TAG by 10.03\% and 9.03\% respectively on the dev and test set. The code is available at https://github.com/THUDM/AutoRE and the demonstration video is provided at https://www.youtube.com/watch?v=IhKRsZUAxKk.
Events describe the state changes of entities. In a document, multiple events are connected by various relations (e.g., Coreference, Temporal, Causal, and Subevent). Therefore, obtaining the connections between events through Event-Event Relation Extraction (ERE) is critical to understand natural language. There are two main problems in the current ERE works: a. Only embeddings of the event triggers are used for event feature representation, ignoring event arguments (e.g., time, place, person, etc.) and their structure within the event. b. The interconnection between relations (e.g., temporal and causal relations usually interact with each other ) is ignored. To solve the above problems, this paper proposes a jointly multiple ERE framework called GraphERE based on Graph-enhanced Event Embeddings. First, we enrich the event embeddings with event argument and structure features by using static AMR graphs and IE graphs; Then, to jointly extract multiple event relations, we use Node Transformer and construct Task-specific Dynamic Event Graphs for each type of relation. Finally, we used a multi-task learning strategy to train the whole framework. Experimental results on the latest MAVEN-ERE dataset validate that GraphERE significantly outperforms existing methods. Further analyses indicate the effectiveness of the graph-enhanced event embeddings and the joint extraction strategy.
Biomedical event extraction is an information extraction task to obtain events from biomedical text, whose targets include the type, the trigger, and the respective arguments involved in an event. Traditional biomedical event extraction usually adopts a pipelined approach, which contains trigger identification, argument role recognition, and finally event construction either using specific rules or by machine learning. In this paper, we propose an n-ary relation extraction method based on the BERT pre-training model to construct Binding events, in order to capture the semantic information about an event's context and its participants. The experimental results show that our method achieves promising results on the GE11 and GE13 corpora of the BioNLP shared task with F1 scores of 63.14% and 59.40%, respectively. It demonstrates that by significantly improving theperformance of Binding events, the overall performance of the pipelined event extraction approach or even exceeds those of current joint learning methods.
Despite the need for financial data on company activities in developing countries for development research and economic analysis, such data does not exist. In this project, we develop and evaluate two Natural Language Processing (NLP) based techniques to address this issue. First, we curate a custom dataset specific to the domain of financial text data on developing countries and explore multiple approaches for information extraction. We then explore a text-to-text approach with the transformer-based T5 model with the goal of undertaking simultaneous NER and relation extraction. We find that this model is able to learn the custom text structure output data corresponding to the entities and their relations, resulting in an accuracy of 92.44\%, a precision of 68.25\% and a recall of 54.20\% from our best T5 model on the combined task. Secondly, we explore an approach with sequential NER and relation extration. For the NER, we run pre-trained and fine-tuned models using SpaCy, and we develop a custom relation extraction model using SpaCy's Dependency Parser output and some heuristics to determine entity relationships \cite{spacy}. We obtain an accuracy of 84.72\%, a precision of 6.06\% and a recall of 5.57\% on this sequential task.
Because protein-protein interactions (PPIs) are crucial to understand living systems, harvesting these data is essential to probe disease development and discern gene/protein functions and biological processes. Some curated datasets contain PPI data derived from the literature and other sources (e.g., IntAct, BioGrid, DIP, and HPRD). However, they are far from exhaustive, and their maintenance is a labor-intensive process. On the other hand, machine learning methods to automate PPI knowledge extraction from the scientific literature have been limited by a shortage of appropriate annotated data. This work presents a unified, multi-source PPI corpora with vetted interaction definitions augmented by binary interaction type labels and a Transformer-based deep learning method that exploits entities' relational context information for relation representation to improve relation classification performance. The model's performance is evaluated on four widely studied biomedical relation extraction datasets, as well as this work's target PPI datasets, to observe the effectiveness of the representation to relation extraction tasks in various data. Results show the model outperforms prior state-of-the-art models. The code and data are available at: https://github.com/BNLNLP/PPI-Relation-Extraction
Syntactic parsing remains a critical tool for relation extraction and information extraction, especially in resource-scarce languages where LLMs are lacking. Yet in morphologically rich languages (MRLs), where parsers need to identify multiple lexical units in each token, existing systems suffer in latency and setup complexity. Some use a pipeline to peel away the layers: first segmentation, then morphology tagging, and then syntax parsing; however, errors in earlier layers are then propagated forward. Others use a joint architecture to evaluate all permutations at once; while this improves accuracy, it is notoriously slow. In contrast, and taking Hebrew as a test case, we present a new "flipped pipeline": decisions are made directly on the whole-token units by expert classifiers, each one dedicated to one specific task. The classifiers are independent of one another, and only at the end do we synthesize their predictions. This blazingly fast approach sets a new SOTA in Hebrew POS tagging and dependency parsing, while also reaching near-SOTA performance on other Hebrew NLP tasks. Because our architecture does not rely on any language-specific resources, it can serve as a model to develop similar parsers for other MRLs.
Objective: This study aims to review the recent advances in community challenges for biomedical text mining in China. Methods: We collected information of evaluation tasks released in community challenges of biomedical text mining, including task description, dataset description, data source, task type and related links. A systematic summary and comparative analysis were conducted on various biomedical natural language processing tasks, such as named entity recognition, entity normalization, attribute extraction, relation extraction, event extraction, text classification, text similarity, knowledge graph construction, question answering, text generation, and large language model evaluation. Results: We identified 39 evaluation tasks from 6 community challenges that spanned from 2017 to 2023. Our analysis revealed the diverse range of evaluation task types and data sources in biomedical text mining. We explored the potential clinical applications of these community challenge tasks from a translational biomedical informatics perspective. We compared with their English counterparts, and discussed the contributions, limitations, lessons and guidelines of these community challenges, while highlighting future directions in the era of large language models. Conclusion: Community challenge evaluation competitions have played a crucial role in promoting technology innovation and fostering interdisciplinary collaboration in the field of biomedical text mining. These challenges provide valuable platforms for researchers to develop state-of-the-art solutions.
Automatic Compliance Checking (ACC) within the Architecture, Engineering, and Construction (AEC) sector necessitates automating the interpretation of building regulations to achieve its full potential. Converting textual rules into machine-readable formats is challenging due to the complexities of natural language and the scarcity of resources for advanced Machine Learning (ML). Addressing these challenges, we introduce CODE-ACCORD, a dataset of 862 sentences from the building regulations of England and Finland. Only the self-contained sentences, which express complete rules without needing additional context, were considered as they are essential for ACC. Each sentence was manually annotated with entities and relations by a team of 12 annotators to facilitate machine-readable rule generation, followed by careful curation to ensure accuracy. The final dataset comprises 4,297 entities and 4,329 relations across various categories, serving as a robust ground truth. CODE-ACCORD supports a range of ML and Natural Language Processing (NLP) tasks, including text classification, entity recognition, and relation extraction. It enables applying recent trends, such as deep neural networks and large language models, to ACC.
Continuous Relation Extraction (CRE) aims to incrementally learn relation knowledge from a non-stationary stream of data. Since the introduction of new relational tasks can overshadow previously learned information, catastrophic forgetting becomes a significant challenge in this domain. Current replay-based training paradigms prioritize all data uniformly and train memory samples through multiple rounds, which would result in overfitting old tasks and pronounced bias towards new tasks because of the imbalances of the replay set. To handle the problem, we introduce the DecouPled CRE (DP-CRE) framework that decouples the process of prior information preservation and new knowledge acquisition. This framework examines alterations in the embedding space as new relation classes emerge, distinctly managing the preservation and acquisition of knowledge. Extensive experiments show that DP-CRE significantly outperforms other CRE baselines across two datasets.
Document-level Relation Extraction (DocRE) aims to identify relation labels between entities within a single document. It requires handling several sentences and reasoning over them. State-of-the-art DocRE methods use a graph structure to connect entities across the document to capture dependency syntax information. However, this is insufficient to fully exploit the rich syntax information in the document. In this work, we propose to fuse constituency and dependency syntax into DocRE. It uses constituency syntax to aggregate the whole sentence information and select the instructive sentences for the pairs of targets. It exploits the dependency syntax in a graph structure with constituency syntax enhancement and chooses the path between entity pairs based on the dependency graph. The experimental results on datasets from various domains demonstrate the effectiveness of the proposed method. The code is publicly available at this url.
This paper investigates the use of large language models (LLMs) for extracting sample lists of polymer nanocomposites (PNCs) from full-length materials science research papers. The challenge lies in the complex nature of PNC samples, which have numerous attributes scattered throughout the text. The complexity of annotating detailed information on PNCs limits the availability of data, making conventional document-level relation extraction techniques impractical due to the challenge in creating comprehensive named entity span annotations. To address this, we introduce a new benchmark and an evaluation technique for this task and explore different prompting strategies in a zero-shot manner. We also incorporate self-consistency to improve the performance. Our findings show that even advanced LLMs struggle to extract all of the samples from an article. Finally, we analyze the errors encountered in this process, categorizing them into three main challenges, and discuss potential strategies for future research to overcome them.
The goal of few-shot relation extraction is to predict relations between name entities in a sentence when only a few labeled instances are available for training. Existing few-shot relation extraction methods focus on uni-modal information such as text only. This reduces performance when there are no clear contexts between the name entities described in text. We propose a multi-modal few-shot relation extraction model (MFS-HVE) that leverages both textual and visual semantic information to learn a multi-modal representation jointly. The MFS-HVE includes semantic feature extractors and multi-modal fusion components. The MFS-HVE semantic feature extractors are developed to extract both textual and visual features. The visual features include global image features and local object features within the image. The MFS-HVE multi-modal fusion unit integrates information from various modalities using image-guided attention, object-guided attention, and hybrid feature attention to fully capture the semantic interaction between visual regions of images and relevant texts. Extensive experiments conducted on two public datasets demonstrate that semantic visual information significantly improves the performance of few-shot relation prediction.