Dialogue relation extraction (DRE) aims to extract relations between two arguments within a dialogue, which is more challenging than standard RE due to the higher person pronoun frequency and lower information density in dialogues. However, existing DRE methods still suffer from two serious issues: (1) hard to capture long and sparse multi-turn information, and (2) struggle to extract golden relations based on partial dialogues, which motivates us to discover more effective methods that can alleviate the above issues. We notice that the rise of large language models (LLMs) has sparked considerable interest in evaluating their performance across diverse tasks. To this end, we initially investigate the capabilities of different LLMs in DRE, considering both proprietary models and open-source models. Interestingly, we discover that LLMs significantly alleviate two issues in existing DRE methods. Generally, we have following findings: (1) scaling up model size substantially boosts the overall DRE performance and achieves exceptional results, tackling the difficulty of capturing long and sparse multi-turn information; (2) LLMs encounter with much smaller performance drop from entire dialogue setting to partial dialogue setting compared to existing methods; (3) LLMs deliver competitive or superior performances under both full-shot and few-shot settings compared to current state-of-the-art; (4) LLMs show modest performances on inverse relations but much stronger improvements on general relations, and they can handle dialogues of various lengths especially for longer sequences.
Domain-Specific Chinese Relation Extraction (DSCRE) aims to extract relations between entities from domain-specific Chinese text. Despite the rapid development of PLMs in recent years, especially LLMs, DSCRE still faces three core challenges: complex network structure design, poor awareness, and high consumption of fine-tuning. Given the impressive performance of large language models (LLMs) in natural language processing, we propose a new framework called CRE-LLM. This framework is based on fine-tuning open-source LLMs, such as Llama-2, ChatGLM2, and Baichuan2. CRE-LLM enhances the logic-awareness and generative capabilities of the model by constructing an appropriate prompt and utilizing open-source LLMs for instruction-supervised fine-tuning. And then it directly extracts the relations of the given entities in the input textual data, which improving the CRE approach. To demonstrate the effectiveness of the proposed framework, we conducted extensive experiments on two domain-specific CRE datasets, FinRE and SanWen. The experimental results show that CRE-LLM is significantly superior and robust, achieving state-of-the-art (SOTA) performance on the FinRE dataset. This paper introduces a novel approach to domain-specific relation extraction (DSCRE) tasks that are semantically more complex by combining LLMs with triples. Our code is publicly available.
Document-level Relation Extraction (DocRE) is the task of extracting all semantic relationships from a document. While studies have been conducted on English DocRE, limited attention has been given to DocRE in non-English languages. This work delves into effectively utilizing existing English resources to promote DocRE studies in non-English languages, with Japanese as the representative case. As an initial attempt, we construct a dataset by transferring an English dataset to Japanese. However, models trained on such a dataset suffer from low recalls. We investigate the error cases and attribute the failure to different surface structures and semantics of documents translated from English and those written by native speakers. We thus switch to explore if the transferred dataset can assist human annotation on Japanese documents. In our proposal, annotators edit relation predictions from a model trained on the transferred dataset. Quantitative analysis shows that relation recommendations suggested by the model help reduce approximately 50% of the human edit steps compared with the previous approach. Experiments quantify the performance of existing DocRE models on our collected dataset, portraying the challenges of Japanese and cross-lingual DocRE.
Expert curation is essential to capture knowledge of enzyme functions from the scientific literature in FAIR open knowledgebases but cannot keep pace with the rate of new discoveries and new publications. In this work we present EnzChemRED, for Enzyme Chemistry Relation Extraction Dataset, a new training and benchmarking dataset to support the development of Natural Language Processing (NLP) methods such as (large) language models that can assist enzyme curation. EnzChemRED consists of 1,210 expert curated PubMed abstracts in which enzymes and the chemical reactions they catalyze are annotated using identifiers from the UniProt Knowledgebase (UniProtKB) and the ontology of Chemical Entities of Biological Interest (ChEBI). We show that fine-tuning pre-trained language models with EnzChemRED can significantly boost their ability to identify mentions of proteins and chemicals in text (Named Entity Recognition, or NER) and to extract the chemical conversions in which they participate (Relation Extraction, or RE), with average F1 score of 86.30% for NER, 86.66% for RE for chemical conversion pairs, and 83.79% for RE for chemical conversion pairs and linked enzymes. We combine the best performing methods after fine-tuning using EnzChemRED to create an end-to-end pipeline for knowledge extraction from text and apply this to abstracts at PubMed scale to create a draft map of enzyme functions in literature to guide curation efforts in UniProtKB and the reaction knowledgebase Rhea. The EnzChemRED corpus is freely available at https://ftp.expasy.org/databases/rhea/nlp/.
Information resources such as newspapers have produced unstructured text data in various languages related to the corona outbreak since December 2019. Analyzing these unstructured texts is time-consuming without representing them in a structured format; therefore, representing them in a structured format is crucial. An information extraction pipeline with essential tasks -- named entity tagging and relation extraction -- to accomplish this goal might be applied to these texts. This study proposes a data annotation pipeline to generate training data from corona news articles, including generic and domain-specific entities. Named entity recognition models are trained on this annotated corpus and then evaluated on test sentences manually annotated by domain experts evaluating the performance of a trained model. The code base and demonstration are available at https://github.com/sefeoglu/coronanews-ner.git.
Information Extraction (IE) is a transformative process that converts unstructured text data into a structured format by employing entity and relation extraction (RE) methodologies. The identification of the relation between a pair of entities plays a crucial role within this framework. Despite the existence of various techniques for relation extraction, their efficacy heavily relies on access to labeled data and substantial computational resources. In addressing these challenges, Large Language Models (LLMs) emerge as promising solutions; however, they might return hallucinating responses due to their own training data. To overcome these limitations, Retrieved-Augmented Generation-based Relation Extraction (RAG4RE) in this work is proposed, offering a pathway to enhance the performance of relation extraction tasks. This work evaluated the effectiveness of our RAG4RE approach utilizing different LLMs. Through the utilization of established benchmarks, such as TACRED, TACREV, Re-TACRED, and SemEval RE datasets, our aim is to comprehensively evaluate the efficacy of our RAG4RE approach. In particularly, we leverage prominent LLMs including Flan T5, Llama2, and Mistral in our investigation. The results of our study demonstrate that our RAG4RE approach surpasses performance of traditional RE approaches based solely on LLMs, particularly evident in the TACRED dataset and its variations. Furthermore, our approach exhibits remarkable performance compared to previous RE methodologies across both TACRED and TACREV datasets, underscoring its efficacy and potential for advancing RE tasks in natural language processing.
Extracting structured information from unstructured text is critical for many downstream NLP applications and is traditionally achieved by closed information extraction (cIE). However, existing approaches for cIE suffer from two limitations: (i) they are often pipelines which makes them prone to error propagation, and/or (ii) they are restricted to sentence level which prevents them from capturing long-range dependencies and results in expensive inference time. We address these limitations by proposing REXEL, a highly efficient and accurate model for the joint task of document level cIE (DocIE). REXEL performs mention detection, entity typing, entity disambiguation, coreference resolution and document-level relation classification in a single forward pass to yield facts fully linked to a reference knowledge graph. It is on average 11 times faster than competitive existing approaches in a similar setting and performs competitively both when optimised for any of the individual subtasks and a variety of combinations of different joint tasks, surpassing the baselines by an average of more than 6 F1 points. The combination of speed and accuracy makes REXEL an accurate cost-efficient system for extracting structured information at web-scale. We also release an extension of the DocRED dataset to enable benchmarking of future work on DocIE, which is available at https://github.com/amazon-science/e2e-docie.
Joint entity and relation extraction plays a pivotal role in various applications, notably in the construction of knowledge graphs. Despite recent progress, existing approaches often fall short in two key aspects: richness of representation and coherence in output structure. These models often rely on handcrafted heuristics for computing entity and relation representations, potentially leading to loss of crucial information. Furthermore, they disregard task and/or dataset-specific constraints, resulting in output structures that lack coherence. In our work, we introduce EnriCo, which mitigates these shortcomings. Firstly, to foster rich and expressive representation, our model leverage attention mechanisms that allow both entities and relations to dynamically determine the pertinent information required for accurate extraction. Secondly, we introduce a series of decoding algorithms designed to infer the highest scoring solutions while adhering to task and dataset-specific constraints, thus promoting structured and coherent outputs. Our model demonstrates competitive performance compared to baselines when evaluated on Joint IE datasets.
Information extraction (IE) is an important task in Natural Language Processing (NLP), involving the extraction of named entities and their relationships from unstructured text. In this paper, we propose a novel approach to this task by formulating it as graph structure learning (GSL). By formulating IE as GSL, we enhance the model's ability to dynamically refine and optimize the graph structure during the extraction process. This formulation allows for better interaction and structure-informed decisions for entity and relation prediction, in contrast to previous models that have separate or untied predictions for these tasks. When compared against state-of-the-art baselines on joint entity and relation extraction benchmarks, our model, GraphER, achieves competitive results.
Multi-modal relation extraction (MMRE) is a challenging task that aims to identify relations between entities in text leveraging image information. Existing methods are limited by their neglect of the multiple entity pairs in one sentence sharing very similar contextual information (ie, the same text and image), resulting in increased difficulty in the MMRE task. To address this limitation, we propose the Variational Multi-Modal Hypergraph Attention Network (VM-HAN) for multi-modal relation extraction. Specifically, we first construct a multi-modal hypergraph for each sentence with the corresponding image, to establish different high-order intra-/inter-modal correlations for different entity pairs in each sentence. We further design the Variational Hypergraph Attention Networks (V-HAN) to obtain representational diversity among different entity pairs using Gaussian distribution and learn a better hypergraph structure via variational attention. VM-HAN achieves state-of-the-art performance on the multi-modal relation extraction task, outperforming existing methods in terms of accuracy and efficiency.
Document Understanding is an evolving field in Natural Language Processing (NLP). In particular, visual and spatial features are essential in addition to the raw text itself and hence, several multimodal models were developed in the field of Visual Document Understanding (VDU). However, while research is mainly focused on Key Information Extraction (KIE), Relation Extraction (RE) between identified entities is still under-studied. For instance, RE is crucial to regroup entities or obtain a comprehensive hierarchy of data in a document. In this paper, we present a model that, initialized from LayoutLMv3, can match or outperform the current state-of-the-art results in RE applied to Visually-Rich Documents (VRD) on FUNSD and CORD datasets, without any specific pre-training and with fewer parameters. We also report an extensive ablation study performed on FUNSD, highlighting the great impact of certain features and modelization choices on the performances.
Business Process Modeling projects often require formal process models as a central component. High costs associated with the creation of such formal process models motivated many different fields of research aimed at automated generation of process models from readily available data. These include process mining on event logs, and generating business process models from natural language texts. Research in the latter field is regularly faced with the problem of limited data availability, hindering both evaluation and development of new techniques, especially learning-based ones. To overcome this data scarcity issue, in this paper we investigate the application of data augmentation for natural language text data. Data augmentation methods are well established in machine learning for creating new, synthetic data without human assistance. We find that many of these methods are applicable to the task of business process information extraction, improving the accuracy of extraction. Our study shows, that data augmentation is an important component in enabling machine learning methods for the task of business process model generation from natural language text, where currently mostly rule-based systems are still state of the art. Simple data augmentation techniques improved the $F_1$ score of mention extraction by 2.9 percentage points, and the $F_1$ of relation extraction by $4.5$. To better understand how data augmentation alters human annotated texts, we analyze the resulting text, visualizing and discussing the properties of augmented textual data. We make all code and experiments results publicly available.
This paper describes our participation in the Shared Task on Software Mentions Disambiguation (SOMD), with a focus on improving relation extraction in scholarly texts through generative Large Language Models (LLMs) using single-choice question-answering. The methodology prioritises the use of in-context learning capabilities of GLMs to extract software-related entities and their descriptive attributes, such as distributive information. Our approach uses Retrieval-Augmented Generation (RAG) techniques and GLMs for Named Entity Recognition (NER) and Attributive NER to identify relationships between extracted software entities, providing a structured solution for analysing software citations in academic literature. The paper provides a detailed description of our approach, demonstrating how using GLMs in a single-choice QA paradigm can greatly enhance IE methodologies. Our participation in the SOMD shared task highlights the importance of precise software citation practices and showcases our system's ability to overcome the challenges of disambiguating and extracting relationships between software mentions. This sets the groundwork for future research and development in this field.
Transforming a sentence into a two-dimensional (2D) representation (e.g., the table filling) has the ability to unfold a semantic plane, where an element of the plane is a word-pair representation of a sentence which may denote a possible relation representation composed of two named entities. The 2D representation is effective in resolving overlapped relation instances. However, in related works, the representation is directly transformed from a raw input. It is weak to utilize prior knowledge, which is important to support the relation extraction task. In this paper, we propose a two-dimensional feature engineering method in the 2D sentence representation for relation extraction. Our proposed method is evaluated on three public datasets (ACE05 Chinese, ACE05 English, and SanWen) and achieves the state-of-the-art performance. The results indicate that two-dimensional feature engineering can take advantage of a two-dimensional sentence representation and make full use of prior knowledge in traditional feature engineering. Our code is publicly available at https://github.com/Wang-ck123/A-Two-Dimensional-Feature-Engineering-Method-for-Entity-Relation-Extraction
We introduce a meta dataset for few-shot relation extraction, which includes two datasets derived from existing supervised relation extraction datasets NYT29 (Takanobu et al., 2019; Nayak and Ng, 2020) and WIKIDATA (Sorokin and Gurevych, 2017) as well as a few-shot form of the TACRED dataset (Sabo et al., 2021). Importantly, all these few-shot datasets were generated under realistic assumptions such as: the test relations are different from any relations a model might have seen before, limited training data, and a preponderance of candidate relation mentions that do not correspond to any of the relations of interest. Using this large resource, we conduct a comprehensive evaluation of six recent few-shot relation extraction methods, and observe that no method comes out as a clear winner. Further, the overall performance on this task is low, indicating substantial need for future research. We release all versions of the data, i.e., both supervised and few-shot, for future research.
In acupuncture therapy, the accurate location of acupoints is essential for its effectiveness. The advanced language understanding capabilities of large language models (LLMs) like Generative Pre-trained Transformers (GPT) present a significant opportunity for extracting relations related to acupoint locations from textual knowledge sources. This study aims to compare the performance of GPT with traditional deep learning models (Long Short-Term Memory (LSTM) and Bidirectional Encoder Representations from Transformers for Biomedical Text Mining (BioBERT)) in extracting acupoint-related location relations and assess the impact of pretraining and fine-tuning on GPT's performance. We utilized the World Health Organization Standard Acupuncture Point Locations in the Western Pacific Region (WHO Standard) as our corpus, which consists of descriptions of 361 acupoints. Five types of relations ('direction_of,' 'distance_of,' 'part_of,' 'near_acupoint,' and 'located_near') (n= 3,174) between acupoints were annotated. Five models were compared: BioBERT, LSTM, pre-trained GPT-3.5, fine-tuned GPT-3.5, as well as pre-trained GPT-4. Performance metrics included micro-average exact match precision, recall, and F1 scores. Our results demonstrate that fine-tuned GPT-3.5 consistently outperformed other models in F1 scores across all relation types. Overall, it achieved the highest micro-average F1 score of 0.92. This study underscores the effectiveness of LLMs like GPT in extracting relations related to acupoint locations, with implications for accurately modeling acupuncture knowledge and promoting standard implementation in acupuncture training and practice. The findings also contribute to advancing informatics applications in traditional and complementary medicine, showcasing the potential of LLMs in natural language processing.
Industry-wide nuclear power plant operating experience is a critical source of raw data for performing parameter estimations in reliability and risk models. Much operating experience information pertains to failure events and is stored as reports containing unstructured data, such as narratives. Event reports are essential for understanding how failures are initiated and propagated, including the numerous causal relations involved. Causal relation extraction using deep learning represents a significant frontier in the field of natural language processing (NLP), and is crucial since it enables the interpretation of intricate narratives and connections contained within vast amounts of written information. This paper proposed a hybrid framework for causality detection and extraction from nuclear licensee event reports. The main contributions include: (1) we compiled an LER corpus with 20,129 text samples for causality analysis, (2) developed an interactive tool for labeling cause effect pairs, (3) built a deep-learning-based approach for causal relation detection, and (4) developed a knowledge based cause-effect extraction approach.
Modern Large Language Models (LLMs) have showcased remarkable prowess in various tasks necessitating sophisticated cognitive behaviors. Nevertheless, a paradoxical performance discrepancy is observed, where these models underperform in seemingly elementary tasks like relation extraction and event extraction due to two issues in conventional evaluation. (1) The imprecision of existing evaluation metrics that struggle to effectively gauge semantic consistency between model outputs and ground truth, and (2) The inherent incompleteness of evaluation benchmarks, primarily due to restrictive human annotation schemas, resulting in underestimated LLM performances. Inspired by the principles in subjective question correction, we propose a new evaluation method, SQC-Score. This method innovatively utilizes LLMs, fine-tuned through subjective question correction data, to refine matching between model outputs and golden labels. Additionally, by incorporating a Natural Language Inference (NLI) model, SQC-Score enriches golden labels, addressing benchmark incompleteness by acknowledging correct yet previously omitted answers. Results on three information extraction tasks show that SQC-Score is more preferred by human annotators than the baseline metrics. Utilizing SQC-Score, we conduct a comprehensive evaluation of the state-of-the-art LLMs and provide insights for future research for information extraction. Dataset and associated codes can be accessed at https://github.com/THU-KEG/SQC-Score.
Recent works in relation extraction (RE) have achieved promising benchmark accuracy; however, our adversarial attack experiments show that these works excessively rely on entities, making their generalization capability questionable. To address this issue, we propose an adversarial training method specifically designed for RE. Our approach introduces both sequence- and token-level perturbations to the sample and uses a separate perturbation vocabulary to improve the search for entity and context perturbations. Furthermore, we introduce a probabilistic strategy for leaving clean tokens in the context during adversarial training. This strategy enables a larger attack budget for entities and coaxes the model to leverage relational patterns embedded in the context. Extensive experiments show that compared to various adversarial training methods, our method significantly improves both the accuracy and robustness of the model. Additionally, experiments on different data availability settings highlight the effectiveness of our method in low-resource scenarios. We also perform in-depth analyses of our proposed method and provide further hints. We will release our code at https://github.com/David-Li0406/READ.
Information extraction (IE) is a fundamental area in natural language processing where prompting large language models (LLMs), even with in-context examples, cannot defeat small LMs tuned on very small IE datasets. We observe that IE tasks, such as named entity recognition and relation extraction, all focus on extracting important information, which can be formalized as a label-to-span matching. In this paper, we propose a novel framework MetaIE to build a small LM as meta-model by learning to extract "important information", i.e., the meta-understanding of IE, so that this meta-model can be adapted to all kind of IE tasks effectively and efficiently. Specifically, MetaIE obtains the small LM via a symbolic distillation from an LLM following the label-to-span scheme. We construct the distillation dataset via sampling sentences from language model pre-training datasets (e.g., OpenWebText in our implementation) and prompting an LLM to identify the typed spans of "important information". We evaluate the meta-model under the few-shot adaptation setting. Extensive results on 13 datasets from 6 IE tasks confirm that MetaIE can offer a better starting point for few-shot tuning on IE datasets and outperform other meta-models from (1) vanilla language model pre-training, (2) multi-IE-task pre-training with human annotations, and (3) single-IE-task symbolic distillation from LLM. Moreover, we provide comprehensive analyses of MetaIE, such as the size of the distillation dataset, the meta-model architecture, and the size of the meta-model.