Neural networks for structured data like graphs have been studied extensively in recent years. To date, the bulk of research activity has focused mainly on static graphs. However, most real-world networks are dynamic since their topology tends to change over time. Predicting the evolution of dynamic graphs is a task of high significance in the area of graph mining. Despite its practical importance, the task has not been explored in depth so far, mainly due to its challenging nature. In this paper, we propose a model that predicts the evolution of dynamic graphs. Specifically, we use a graph neural network along with a recurrent architecture to capture the temporal evolution patterns of dynamic graphs. Then, we employ a generative model which predicts the topology of the graph at the next time step and constructs a graph instance that corresponds to that topology. We evaluate the proposed model on several artificial datasets following common network evolving dynamics, as well as on real-world datasets. Results demonstrate the effectiveness of the proposed model.
Community detection has arisen as one of the most relevant topics in the field of graph mining, principally for its applications in domains such as social or biological networks analysis. Different community detection algorithms have been proposed during the last decade, approaching the problem from different perspectives. However, existing algorithms are, in general, based on complex and expensive computations, making them unsuitable for large graphs with millions of vertices and edges such as those usually found in the real world. In this paper, we propose a novel disjoint community detection algorithm called Scalable Community Detection (SCD). By combining different strategies, SCD partitions the graph by maximizing the Weighted Community Clustering (WCC), a recently proposed community detection metric based on triangle analysis. Using real graphs with ground truth overlapped communities, we show that SCD outperforms the current state of the art proposals (even those aimed at finding overlapping communities) in terms of quality and performance. SCD provides the speed of the fastest algorithms and the quality in terms of NMI and F1Score of the most accurate state of the art proposals. We show that SCD is able to run up to two orders of magnitude faster than practical existing solutions by exploiting the parallelism of current multi-core processors, enabling us to process graphs of unprecedented size in short execution times.
Medical research is risky and expensive. Drug discovery, as an example, requires that researchers efficiently winnow thousands of potential targets to a small candidate set for more thorough evaluation. However, research groups spend significant time and money to perform the experiments necessary to determine this candidate set long before seeing intermediate results. Hypothesis generation systems address this challenge by mining the wealth of publicly available scientific information to predict plausible research directions. We present AGATHA, a deep-learning hypothesis generation system that can introduce data-driven insights earlier in the discovery process. Through a learned ranking criteria, this system quickly prioritizes plausible term-pairs among entity sets, allowing us to recommend new research directions. We massively validate our system with a temporal holdout wherein we predict connections first introduced after 2015 using data published beforehand. We additionally explore biomedical sub-domains, and demonstrate AGATHA's predictive capacity across the twenty most popular relationship types. This system achieves best-in-class performance on an established benchmark, and demonstrates high recommendation scores across subdomains. Reproducibility: All code, experimental data, and pre-trained models are available online: sybrandt.com/2020/agatha
Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides vector representations of the graph. One limitation of existing graph embedding methods is that their embedding optimization procedures are disconnected from the target application. In this paper, we propose a novel approach, namely Customized Graph Embedding (CGE) to tackle this problem. The CGE algorithm learns customized vector representations of graph nodes by differentiating the importance of distinct graph paths automatically for a specific application. Extensive experiments were carried out on a diverse set of node classification datasets, which demonstrate strong performances of CGE and provide deep insights into the model.
Given the reach of web platforms, bad actors have considerable incentives to manipulate and defraud users at the expense of platform integrity. This has spurred research in numerous suspicious behavior detection tasks, including detection of sybil accounts, false information, and payment scams/fraud. In this paper, we draw the insight that many such initiatives can be tackled in a common framework by posing a detection task which seeks to find groups of entities which share too many properties with one another across multiple attributes (sybil accounts created at the same time and location, propaganda spreaders broadcasting articles with the same rhetoric and with similar reshares, etc.) Our work makes four core contributions: Firstly, we posit a novel formulation of this task as a multi-view graph mining problem, in which distinct views reflect distinct attribute similarities across entities, and contextual similarity and attribute importance are respected. Secondly, we propose a novel suspiciousness metric for scoring entity groups given the abnormality of their synchronicity across multiple views, which obeys intuitive desiderata that existing metrics do not. Finally, we propose the SliceNDice algorithm which enables efficient extraction of highly suspicious entity groups, and demonstrate its practicality in production, in terms of strong detection performance and discoveries on Snapchat's large advertiser ecosystem (89% precision and numerous discoveries of real fraud rings), marked outperformance of baselines (over 97% precision/recall in simulated settings) and linear scalability.
In a wide variety of situations, anomalies in the behaviour of a complex system, whose health is monitored through the observation of a random vector X = (X1,. .. , X d) valued in R d , correspond to the simultaneous occurrence of extreme values for certain subgroups $\alpha$ $\subset$ {1,. .. , d} of variables Xj. Under the heavy-tail assumption, which is precisely appropriate for modeling these phenomena, statistical methods relying on multivariate extreme value theory have been developed in the past few years for identifying such events/subgroups. This paper exploits this approach much further by means of a novel mixture model that permits to describe the distribution of extremal observations and where the anomaly type $\alpha$ is viewed as a latent variable. One may then take advantage of the model by assigning to any extreme point a posterior probability for each anomaly type $\alpha$, defining implicitly a similarity measure between anomalies. It is explained at length how the latter permits to cluster extreme observations and obtain an informative planar representation of anomalies using standard graph-mining tools. The relevance and usefulness of the clustering and 2-d visual display thus designed is illustrated on simulated datasets and on real observations as well, in the aeronautics application domain.
Rapid and massive adoption of mobile/ online payment services has brought new challenges to the service providers as well as regulators in safeguarding the proper uses such services/ systems. In this paper, we leverage recent advances in deep-neural-network-based graph representation learning to detect abnormal/ suspicious financial transactions in real-world e-payment networks. In particular, we propose an end-to-end Graph Convolution Network (GCN)-based algorithm to learn the embeddings of the nodes and edges of a large-scale time-evolving graph. In the context of e-payment transaction graphs, the resultant node and edge embeddings can effectively characterize the user-background as well as the financial transaction patterns of individual account holders. As such, we can use the graph embedding results to drive downstream graph mining tasks such as node-classification to identify illicit accounts within the payment networks. Our algorithm outperforms state-of-the-art schemes including GraphSAGE, Gradient Boosting Decision Tree and Random Forest to deliver considerably higher accuracy (94.62% and 86.98% respectively) in classifying user accounts within 2 practical e-payment transaction datasets. It also achieves outstanding accuracy (97.43%) for another biomedical entity identification task while using only edge-related information.
Aggregating responses from crowd workers is a fundamental task in the process of crowdsourcing. In cases where a few experts are overwhelmed by a large number of non-experts, most answer aggregation algorithms such as the majority voting fail to identify the correct answers. Therefore, it is crucial to extract reliable experts from the crowd workers. In this study, we introduce the notion of "expert core", which is a set of workers that is very unlikely to contain a non-expert. We design a graph-mining-based efficient algorithm that exactly computes the expert core. To answer the aggregation task, we propose two types of algorithms. The first one incorporates the expert core into existing answer aggregation algorithms such as the majority voting, whereas the second one utilizes information provided by the expert core extraction algorithm pertaining to the reliability of workers. We then give a theoretical justification for the first type of algorithm. Computational experiments using synthetic and real-world datasets demonstrate that our proposed answer aggregation algorithms outperform state-of-the-art algorithms.
This paper investigates the interplay between different types of user interactions on Twitter, with respect to predicting missing or unseen interactions. For example, given a set of retweet interactions between Twitter users, how accurately can we predict reply interactions? Is it more difficult to predict retweet or quote interactions between a pair of accounts? Also, how important is time locality, and which features of interaction patterns are most important to enable accurate prediction of specific Twitter interactions? Our empirical study of Twitter interactions contributes initial answers to these questions. We have crawled an extensive dataset of Greek-speaking Twitter accounts and their follow, quote, retweet, reply interactions over a period of a month. We find we can accurately predict many interactions of Twitter users. Interestingly, the most predictive features vary with the user profiles, and are not the same across all users. For example, for a pair of users that interact with a large number of other Twitter users, we find that certain "higher-dimensional" triads, i.e., triads that involve multiple types of interactions, are very informative, whereas for less active Twitter users, certain in-degrees and out-degrees play a major role. Finally, we provide various other insights on Twitter user behavior. Our code and data are available at https://github.com/twittermancer/. Keywords: Graph mining, machine learning, social media, social networks
Discovering the underlying structure of a given graph is one of the fundamental goals in graph mining. Given a graph, we can often order vertices in a way that neighboring vertices have a higher probability of being connected to each other. This implies that the edges form a band around the diagonal in the adjacency matrix. Such structure may rise for example if the graph was created over time: each vertex had an active time interval during which the vertex was connected with other active vertices. The goal of this paper is to model this phenomenon. To this end, we formulate an optimization problem: given a graph and an integer $K$, we want to order graph vertices and partition the ordered adjacency matrix into $K$ bands such that bands closer to the diagonal are more dense. We measure the goodness of a segmentation using the log-likelihood of a log-linear model, a flexible family of distributions containing many standard distributions. We divide the problem into two subproblems: finding the order and finding the bands. We show that discovering bands can be done in polynomial time with isotonic regression, and we also introduce a heuristic iterative approach. For discovering the order we use Fiedler order accompanied with a simple combinatorial refinement. We demonstrate empirically that our heuristic works well in practice.
A main challenge in mining network-based data is finding effective ways to represent or encode graph structures so that it can be efficiently exploited by machine learning algorithms. Several methods have focused in network representation at node/edge or substructure level. However, many real life challenges such as time-varying, multilayer, chemical compounds and brain networks involve analysis of a family of graphs instead of single one opening additional challenges in graph comparison and representation. Traditional approaches for learning representations relies on hand-crafting specialized heuristics to extract meaningful information about the graphs, e.g statistical properties, structural features, etc. as well as engineered graph distances to quantify dissimilarity between networks. In this work we provide an unsupervised approach to learn embedding representation for a collection of graphs so that it can be used in numerous graph mining tasks. By using an unsupervised neural network approach on input graphs, we aim to capture the underlying distribution of the data in order to discriminate between different class of networks. Our method is assessed empirically on synthetic and real life datasets and evaluated in three different tasks: graph clustering, visualization and classification. Results reveal that our method outperforms well known graph distances and graph-kernels in clustering and classification tasks, being highly efficient in runtime.
Network embedding has attracted an increasing attention over the past few years. As an effective approach to solve graph mining problems, network embedding aims to learn a low-dimensional feature vector representation for each node of a given network. The vast majority of existing network embedding algorithms, however, are only designed for unsigned networks, and the signed networks containing both positive and negative links, have pretty distinct properties from the unsigned counterpart. In this paper, we propose a deep network embedding model to learn the low-dimensional node vector representations with structural balance preservation for the signed networks. The model employs a semi-supervised stacked auto-encoder to reconstruct the adjacency connections of a given signed network. As the adjacency connections are overwhelmingly positive in the real-world signed networks, we impose a larger penalty to make the auto-encoder focus more on reconstructing the scarce negative links than the abundant positive links. In addition, to preserve the structural balance property of signed networks, we design the pairwise constraints to make the positively connected nodes much closer than the negatively connected nodes in the embedding space. Based on the network representations learned by the proposed model, we conduct link sign prediction and community detection in signed networks. Extensive experimental results in real-world datasets demonstrate the superiority of the proposed model over the state-of-the-art network embedding algorithms for graph representation learning in signed networks.
Semi-supervised node classification in graphs is a fundamental problem in graph mining, and the recently proposed graph neural networks (GNNs) have achieved unparalleled results on this task. Due to their massive success, GNNs have attracted a lot of attention, and many novel architectures have been put forward. In this paper we show that existing evaluation strategies for GNN models have serious shortcomings. We show that using the same train/validation/test splits of the same datasets, as well as making significant changes to the training procedure (e.g. early stopping criteria) precludes a fair comparison of different architectures. We perform a thorough empirical evaluation of four prominent GNN models and show that considering different splits of the data leads to dramatically different rankings of models. Even more importantly, our findings suggest that simpler GNN architectures are able to outperform the more sophisticated ones if the hyperparameters and the training procedure are tuned fairly for all models.
Detecting small sets of relevant patterns from a given dataset is a central challenge in data mining. The relevance of a pattern is based on user-provided criteria; typically, all patterns that satisfy certain criteria are considered relevant. Rule-based languages like Answer Set Programming (ASP) seem well-suited for specifying such criteria in a form of constraints. Although progress has been made, on the one hand, on solving individual mining problems and, on the other hand, developing generic mining systems, the existing methods either focus on scalability or on generality. In this paper we make steps towards combining local (frequency, size, cost) and global (various condensed representations like maximal, closed, skyline) constraints in a generic and efficient way. We present a hybrid approach for itemset, sequence and graph mining which exploits dedicated highly optimized mining systems to detect frequent patterns and then filters the results using declarative ASP. To further demonstrate the generic nature of our hybrid framework we apply it to a problem of approximately tiling a database. Experiments on real-world datasets show the effectiveness of the proposed method and computational gains for itemset, sequence and graph mining, as well as approximate tiling. Under consideration in Theory and Practice of Logic Programming (TPLP).
Graph-structured data arise naturally in many different application domains. By representing data as graphs, we can capture entities (i.e., nodes) as well as their relationships (i.e., edges) with each other. Many useful insights can be derived from graph-structured data as demonstrated by an ever-growing body of work focused on graph mining. However, in the real-world, graphs can be both large - with many complex patterns - and noisy which can pose a problem for effective graph mining. An effective way to deal with this issue is to incorporate "attention" into graph mining solutions. An attention mechanism allows a method to focus on task-relevant parts of the graph, helping it to make better decisions. In this work, we conduct a comprehensive and focused survey of the literature on the emerging field of graph attention models. We introduce three intuitive taxonomies to group existing work. These are based on problem setting (type of input and output), the type of attention mechanism used, and the task (e.g., graph classification, link prediction, etc.). We motivate our taxonomies through detailed examples and use each to survey competing approaches from a unique standpoint. Finally, we highlight several challenges in the area and discuss promising directions for future work.
Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques aim to automatically create a low-dimensional representation of a given graph, which captures key structural elements in the resulting embedding space. However, to date, there has been little work exploring exactly which topological structures are being learned in the embeddings process. In this paper, we investigate if graph embeddings are approximating something analogous with traditional vertex level graph features. If such a relationship can be found, it could be used to provide a theoretical insight into how graph embedding approaches function. We perform this investigation by predicting known topological features, using supervised and unsupervised methods, directly from the embedding space. If a mapping between the embeddings and topological features can be found, then we argue that the structural information encapsulated by the features is represented in the embedding space. To explore this, we present extensive experimental evaluation from five state-of-the-art unsupervised graph embedding techniques, across a range of empirical graph datasets, measuring a selection of topological features. We demonstrate that several topological features are indeed being approximated by the embedding space, allowing key insight into how graph embeddings create good representations.
This paper proposes a web-based visual graph analytics platform for interactive graph mining, visualization, and real-time exploration of networks. GraphVis is fast, intuitive, and flexible, combining interactive visualizations with analytic techniques to reveal important patterns and insights for sense making, reasoning, and decision making. Networks can be visualized and explored within seconds by simply drag-and-dropping a graph file into the web browser. The structure, properties, and patterns of the network are computed automatically and can be instantly explored in real-time. At the heart of GraphVis lies a multi-level interactive network visualization and analytics engine that allows for real-time graph mining and exploration across multiple levels of granularity simultaneously. Both the graph analytic and visualization techniques (at each level of granularity) are dynamic and interactive, with immediate and continuous visual feedback upon every user interaction (e.g., change of a slider for filtering). Furthermore, nodes, edges, and subgraphs are easily inserted, deleted or exported via a number of novel techniques and tools that make it extremely easy and flexible for exploring, testing hypothesis, and understanding networks in real-time over the web. A number of interactive visual graph analytic techniques are also proposed including interactive role discovery methods, community detection, as well as a number of novel block models for generating graphs with community structure. Finally, we also highlight other key aspects including filtering, querying, ranking, manipulating, exporting, partitioning, as well as tools for dynamic network analysis and visualization, interactive graph generators, and a variety of multi-level network analysis, summarization, and statistical techniques.
In this paper we study predictive pattern mining problems where the goal is to construct a predictive model based on a subset of predictive patterns in the database. Our main contribution is to introduce a novel method called safe pattern pruning (SPP) for a class of predictive pattern mining problems. The SPP method allows us to efficiently find a superset of all the predictive patterns in the database that are needed for the optimal predictive model. The advantage of the SPP method over existing boosting-type method is that the former can find the superset by a single search over the database, while the latter requires multiple searches. The SPP method is inspired by recent development of safe feature screening. In order to extend the idea of safe feature screening into predictive pattern mining, we derive a novel pruning rule called safe pattern pruning (SPP) rule that can be used for searching over the tree defined among patterns in the database. The SPP rule has a property that, if a node corresponding to a pattern in the database is pruned out by the SPP rule, then it is guaranteed that all the patterns corresponding to its descendant nodes are never needed for the optimal predictive model. We apply the SPP method to graph mining and item-set mining problems, and demonstrate its computational advantage.
To process data that do not fit in RAM, conventional wisdom would suggest using distributed approaches. However, recent research has demonstrated virtual memory's strong potential in scaling up graph mining algorithms on a single machine. We propose to use a similar approach for general machine learning. We contribute: (1) our latest finding that memory mapping is also a feasible technique for scaling up general machine learning algorithms like logistic regression and k-means, when data fits in or exceeds RAM (we tested datasets up to 190GB); (2) an approach, called M3, that enables existing machine learning algorithms to work with out-of-core datasets through memory mapping, achieving a speed that is significantly faster than a 4-instance Spark cluster, and comparable to an 8-instance cluster.
Many problems, especially those with a composite structure, can naturally be expressed in higher order logic. From a KR perspective modeling these problems in an intuitive way is a challenging task. In this paper we study the graph mining problem as an example of a higher order problem. In short, this problem asks us to find a graph that frequently occurs as a subgraph among a set of example graphs. We start from the problem's mathematical definition to solve it in three state-of-the-art specification systems. For IDP and ASP, which have no native support for higher order logic, we propose the use of encoding techniques such as the disjoint union technique and the saturation technique. ProB benefits from the higher order support for sets. We compare the performance of the three approaches to get an idea of the overhead of the higher order support. We propose higher-order language extensions for IDP-like specification languages and discuss what kind of solver support is needed. Native higher order shifts the burden of rewriting specifications using encoding techniques from the user to the solver itself.