Objectives: Our research adopts computational techniques to analyze disease outbreaks weekly over a large geographic area while maintaining local-level analysis by incorporating relevant high-spatial resolution cultural and environmental datasets. The abundance of data about disease outbreaks gives scientists an excellent opportunity to uncover patterns in disease spread and make future predictions. However, data over a sizeable geographic area quickly outpace human cognition. Our study area covers a significant portion of the African continent (about 17,885,000 km2). The data size makes computational analysis vital to assist human decision-makers. Methods: We first applied global and local spatial autocorrelation for malaria, cholera, meningitis, and yellow fever case counts. We then used machine learning to predict the weekly presence of these diseases in the second-level administrative district. Lastly, we used machine learning feature importance methods on the variables that affect spread. Results: Our spatial autocorrelation results show that geographic nearness is critical but varies in effect and space. Moreover, we identified many interesting hot and cold spots and spatial outliers. The machine learning model infers a binary class of cases or none with the best F1 score of 0.96 for malaria. Machine learning feature importance uncovered critical cultural and environmental factors affecting outbreaks and variations between diseases. Conclusions: Our study shows that data analytics and machine learning are vital to understanding and monitoring disease outbreaks locally across vast areas. The speed at which these methods produce insights can be critical during epidemics and emergencies.
Phishing attacks remain a persistent threat to online security, demanding robust detection methods. This study investigates the use of machine learning to identify phishing URLs, emphasizing the crucial role of feature selection and model interpretability for improved performance. Employing Recursive Feature Elimination, the research pinpointed key features like "length_url," "time_domain_activation" and "Page_rank" as strong indicators of phishing attempts. The study evaluated various algorithms, including CatBoost, XGBoost, and Explainable Boosting Machine, assessing their robustness and scalability. XGBoost emerged as highly efficient in terms of runtime, making it well-suited for large datasets. CatBoost, on the other hand, demonstrated resilience by maintaining high accuracy even with reduced features. To enhance transparency and trustworthiness, Explainable AI techniques, such as SHAP, were employed to provide insights into feature importance. The study's findings highlight that effective feature selection and model interpretability can significantly bolster phishing detection systems, paving the way for more efficient and adaptable defenses against evolving cyber threats
In democratic societies, electoral systems play a crucial role in translating public preferences into political representation. Among these, the D'Hondt method is widely used to ensure proportional representation, balancing fair representation with governmental stability. Recently, there has been a growing interest in applying similar principles of proportional representation to enhance interpretability in machine learning, specifically in Explainable AI (XAI). This study investigates the integration of D'Hondt-based voting principles in the DhondtXAI method, which leverages resource allocation concepts to interpret feature importance within AI models. Through a comparison of SHAP (Shapley Additive Explanations) and DhondtXAI, we evaluate their effectiveness in feature attribution within CatBoost and XGBoost models for breast cancer and diabetes prediction, respectively. The DhondtXAI approach allows for alliance formation and thresholding to enhance interpretability, representing feature importance as seats in a parliamentary view. Statistical correlation analyses between SHAP values and DhondtXAI allocations support the consistency of interpretations, demonstrating DhondtXAI's potential as a complementary tool for understanding feature importance in AI models. The results highlight that integrating electoral principles, such as proportional representation and alliances, into AI explainability can improve user understanding, especially in high-stakes fields like healthcare.
Multimodal learning has been a popular area of research, yet integrating electroencephalogram (EEG) data poses unique challenges due to its inherent variability and limited availability. In this paper, we introduce a novel multimodal framework that accommodates not only conventional modalities such as video, images, and audio, but also incorporates EEG data. Our framework is designed to flexibly handle varying input sizes, while dynamically adjusting attention to account for feature importance across modalities. We evaluate our approach on a recently introduced emotion recognition dataset that combines data from three modalities, making it an ideal testbed for multimodal learning. The experimental results provide a benchmark for the dataset and demonstrate the effectiveness of the proposed framework. This work highlights the potential of integrating EEG into multimodal systems, paving the way for more robust and comprehensive applications in emotion recognition and beyond.
Denial of Service (DoS) attacks pose a significant threat in the realm of AI systems security, causing substantial financial losses and downtime. However, AI systems' high computational demands, dynamic behavior, and data variability make monitoring and detecting DoS attacks challenging. Nowadays, statistical and machine learning (ML)-based DoS classification and detection approaches utilize a broad range of feature selection mechanisms to select a feature subset from networking traffic datasets. Feature selection is critical in enhancing the overall model performance and attack detection accuracy while reducing the training time. In this paper, we investigate the importance of feature selection in improving ML-based detection of DoS attacks. Specifically, we explore feature contribution to the overall components in DoS traffic datasets by utilizing statistical analysis and feature engineering approaches. Our experimental findings demonstrate the usefulness of the thorough statistical analysis of DoS traffic and feature engineering in understanding the behavior of the attack and identifying the best feature selection for ML-based DoS classification and detection.
Graph Neural Networks (GNNs) are a powerful technique for machine learning on graph-structured data, yet they pose interpretability challenges, especially for non-expert users. Existing GNN explanation methods often yield technical outputs such as subgraphs and feature importance scores, which are not easily understood. Building on recent insights from social science and other Explainable AI (XAI) methods, we propose GraphXAIN, a natural language narrative that explains individual predictions made by GNNs. We present a model-agnostic and explainer-agnostic XAI approach that complements graph explainers by generating GraphXAINs, using Large Language Models (LLMs) and integrating graph data, individual predictions from GNNs, explanatory subgraphs, and feature importances. We define XAI Narratives and XAI Descriptions, highlighting their distinctions and emphasizing the importance of narrative principles in effective explanations. By incorporating natural language narratives, our approach supports graph practitioners and non-expert users, aligning with social science research on explainability and enhancing user understanding and trust in complex GNN models. We demonstrate GraphXAIN's capabilities on a real-world graph dataset, illustrating how its generated narratives can aid understanding compared to traditional graph explainer outputs or other descriptive explanation methods.
In this paper, we address the challenges in automatic sleep stage classification, particularly the high computational cost, inadequate modeling of bidirectional temporal dependencies, and class imbalance issues faced by Transformer-based models. To address these limitations, we propose BiT-MamSleep, a novel architecture that integrates the Triple-Resolution CNN (TRCNN) for efficient multi-scale feature extraction with the Bidirectional Mamba (BiMamba) mechanism, which models both short- and long-term temporal dependencies through bidirectional processing of EEG data. Additionally, BiT-MamSleep incorporates an Adaptive Feature Recalibration (AFR) module and a temporal enhancement block to dynamically refine feature importance, optimizing classification accuracy without increasing computational complexity. To further improve robustness, we apply optimization techniques such as Focal Loss and SMOTE to mitigate class imbalance. Extensive experiments on four public datasets demonstrate that BiT-MamSleep significantly outperforms state-of-the-art methods, particularly in handling long EEG sequences and addressing class imbalance, leading to more accurate and scalable sleep stage classification.
Osteoporosis is a common condition that increases fracture risk, especially in older adults. Early diagnosis is vital for preventing fractures, reducing treatment costs, and preserving mobility. However, healthcare providers face challenges like limited labeled data and difficulties in processing medical images. This study presents a novel multi-modal learning framework that integrates clinical and imaging data to improve diagnostic accuracy and model interpretability. The model utilizes three pre-trained networks-VGG19, InceptionV3, and ResNet50-to extract deep features from X-ray images. These features are transformed using PCA to reduce dimensionality and focus on the most relevant components. A clustering-based selection process identifies the most representative components, which are then combined with preprocessed clinical data and processed through a fully connected network (FCN) for final classification. A feature importance plot highlights key variables, showing that Medical History, BMI, and Height were the main contributors, emphasizing the significance of patient-specific data. While imaging features were valuable, they had lower importance, indicating that clinical data are crucial for accurate predictions. This framework promotes precise and interpretable predictions, enhancing transparency and building trust in AI-driven diagnoses for clinical integration.
Transformer-based models have achieved state-of-the-art performance in various computer vision tasks, including image and video analysis. However, Transformer's complex architecture and black-box nature pose challenges for explainability, a crucial aspect for real-world applications and scientific inquiry. Current Explainable AI (XAI) methods can only provide one-dimensional feature importance, either spatial or temporal explanation, with significant computational complexity. This paper introduces STAA (Spatio-Temporal Attention Attribution), an XAI method for interpreting video Transformer models. Differ from traditional methods that separately apply image XAI techniques for spatial features or segment contribution analysis for temporal aspects, STAA offers both spatial and temporal information simultaneously from attention values in Transformers. The study utilizes the Kinetics-400 dataset, a benchmark collection of 400 human action classes used for action recognition research. We introduce metrics to quantify explanations. We also apply optimization to enhance STAA's raw output. By implementing dynamic thresholding and attention focusing mechanisms, we improve the signal-to-noise ratio in our explanations, resulting in more precise visualizations and better evaluation results. In terms of computational overhead, our method requires less than 3\% of the computational resources of traditional XAI methods, making it suitable for real-time video XAI analysis applications. STAA contributes to the growing field of XAI by offering a method for researchers and practitioners to analyze Transformer models.
Feature engineering is crucial for optimizing machine learning model performance, particularly in tabular data classification tasks. Leveraging advancements in natural language processing, this study presents a systematic approach to enrich tabular datasets with features derived from large language model embeddings. Through a comprehensive ablation study on diverse datasets, we assess the impact of RoBERTa and GPT-2 embeddings on ensemble classifiers, including Random Forest, XGBoost, and CatBoost. Results indicate that integrating embeddings with traditional numerical and categorical features often enhances predictive performance, especially on datasets with class imbalance or limited features and samples, such as UCI Adult, Heart Disease, Titanic, and Pima Indian Diabetes, with improvements particularly notable in XGBoost and CatBoost classifiers. Additionally, feature importance analysis reveals that LLM-derived features frequently rank among the most impactful for the predictions. This study provides a structured approach to embedding-based feature enrichment and illustrates its benefits in ensemble learning for tabular data.
This paper presents the development of machine learning (ML) models to predict hypoxemia severity during emergency triage, especially in Chemical, Biological, Radiological, Nuclear, and Explosive (CBRNE) events, using physiological data from medical-grade sensors. Gradient Boosting Models (XGBoost, LightGBM, CatBoost) and sequential models (LSTM, GRU) were trained on physiological and demographic data from the MIMIC-III and IV datasets. A robust preprocessing pipeline addressed missing data, class imbalances, and incorporated synthetic data flagged with masks. Gradient Boosting Models (GBMs) outperformed sequential models in terms of training speed, interpretability, and reliability, making them well-suited for real-time decision-making. While their performance was comparable to that of sequential models, the GBMs used score features from six physiological variables derived from the enhanced National Early Warning Score (NEWS) 2, which we termed NEWS2+. This approach significantly improved prediction accuracy. While sequential models handled temporal data well, their performance gains did not justify the higher computational cost. A 5-minute prediction window was chosen for timely intervention, with minute-level interpolations standardizing the data. Feature importance analysis highlighted the significant role of mask and score features in enhancing both transparency and performance. Temporal dependencies proved to be less critical, as Gradient Boosting Models were able to capture key patterns effectively without relying on them. This study highlights ML's potential to improve triage and reduce alarm fatigue. Future work will integrate data from multiple hospitals to enhance model generalizability across clinical settings.
In explainable machine learning, global feature importance methods try to determine how much each individual feature contributes to predicting the target variable, resulting in one importance score for each feature. But often, predicting the target variable requires interactions between several features (such as in the XOR function), and features might have complex statistical dependencies that allow to partially replace one feature with another one. In commonly used feature importance scores these cooperative effects are conflated with the features' individual contributions, making them prone to misinterpretations. In this work, we derive DIP, a new mathematical decomposition of individual feature importance scores that disentangles three components: the standalone contribution and the contributions stemming from interactions and dependencies. We prove that the DIP decomposition is unique and show how it can be estimated in practice. Based on these results, we propose a new visualization of feature importance scores that clearly illustrates the different contributions.
Machine learning models routinely automate decisions in applications like lending and hiring. In such settings, consumer protection rules require companies that deploy models to explain predictions to decision subjects. These rules are motivated, in part, by the belief that explanations can promote recourse by revealing information that individuals can use to contest or improve their outcomes. In practice, many companies comply with these rules by providing individuals with a list of the most important features for their prediction, which they identify based on feature importance scores from feature attribution methods such as SHAP or LIME. In this work, we show how these practices can undermine consumers by highlighting features that would not lead to an improved outcome and by explaining predictions that cannot be changed. We propose to address these issues by highlighting features based on their responsiveness score -- i.e., the probability that an individual can attain a target prediction by changing a specific feature. We develop efficient methods to compute responsiveness scores for any model and any dataset. We conduct an extensive empirical study on the responsiveness of explanations in lending. Our results show that standard practices in consumer finance can backfire by presenting consumers with reasons without recourse, and demonstrate how our approach improves consumer protection by highlighting responsive features and identifying fixed predictions.
Document images are often degraded by various stains, significantly impacting their readability and hindering downstream applications such as document digitization and analysis. The absence of a comprehensive stained document dataset has limited the effectiveness of existing document enhancement methods in removing stains while preserving fine-grained details. To address this challenge, we construct StainDoc, the first large-scale, high-resolution ($2145\times2245$) dataset specifically designed for document stain removal. StainDoc comprises over 5,000 pairs of stained and clean document images across multiple scenes. This dataset encompasses a diverse range of stain types, severities, and document backgrounds, facilitating robust training and evaluation of document stain removal algorithms. Furthermore, we propose StainRestorer, a Transformer-based document stain removal approach. StainRestorer employs a memory-augmented Transformer architecture that captures hierarchical stain representations at part, instance, and semantic levels via the DocMemory module. The Stain Removal Transformer (SRTransformer) leverages these feature representations through a dual attention mechanism: an enhanced spatial attention with an expanded receptive field, and a channel attention captures channel-wise feature importance. This combination enables precise stain removal while preserving document content integrity. Extensive experiments demonstrate StainRestorer's superior performance over state-of-the-art methods on the StainDoc dataset and its variants StainDoc\_Mark and StainDoc\_Seal, establishing a new benchmark for document stain removal. Our work highlights the potential of memory-augmented Transformers for this task and contributes a valuable dataset to advance future research.
This study evaluates the generalisation capabilities of state-of-the-art histopathology foundation models on out-of-distribution multi-stain autoimmune Immunohistochemistry datasets. We compare 13 feature extractor models, including ImageNet-pretrained networks, and histopathology foundation models trained on both public and proprietary data, on Rheumatoid Arthritis subtyping and Sjogren's Disease detection tasks. Using a simple Attention-Based Multiple Instance Learning classifier, we assess the transferability of learned representations from cancer H&E images to autoimmune IHC images. Contrary to expectations, histopathology-pretrained models did not significantly outperform ImageNet-pretrained models. Furthermore, there was evidence of both autoimmune feature misinterpretation and biased feature importance. Our findings highlight the challenges in transferring knowledge from cancer to autoimmune histopathology and emphasise the need for careful evaluation of AI models across diverse histopathological tasks. The code to run this benchmark is available at https://github.com/AmayaGS/ImmunoHistoBench.
This study introduces an advanced transient stability assessment (TSA) method for power systems, addressing the challenges of sample class imbalance and data noise through a novel CatBoost algorithm framework. By implementing a Gradient Harmonizing Mechanism (GHM), this method adjusts the gradient norm distribution across samples by incorporating a coordination parameter for each, thus optimizing the gradient weights for various sample types. This enhancement enables more effective training of the CatBoost algorithm, reducing the negative impacts of class imbalance and noise, and enhancing algorithmic performance. Additionally, the feature importance functionality of the CatBoost framework guides the placement of phasor measurement units, promoting economical operation of the power system. Numerical results from the New England 10-machine 39-bus system demonstrate the superior versatility, reduced application cost, and lower maintenance expenses of the proposed method compared to existing techniques.
This paper introduces Fast Calibrated Explanations, a method designed for generating rapid, uncertainty-aware explanations for machine learning models. By incorporating perturbation techniques from ConformaSight - a global explanation framework - into the core elements of Calibrated Explanations (CE), we achieve significant speedups. These core elements include local feature importance with calibrated predictions, both of which retain uncertainty quantification. While the new method sacrifices a small degree of detail, it excels in computational efficiency, making it ideal for high-stakes, real-time applications. Fast Calibrated Explanations are applicable to probabilistic explanations in classification and thresholded regression tasks, where they provide the likelihood of a target being above or below a user-defined threshold. This approach maintains the versatility of CE for both classification and probabilistic regression, making it suitable for a range of predictive tasks where uncertainty quantification is crucial.
This work presents an omics-driven modeling pipeline that integrates machine-learning tools to facilitate the dynamic modeling of multiscale biological systems. Random forests and permutation feature importance are proposed to mine omics datasets, guiding feature selection and dimensionality reduction for dynamic modeling. Continuous and differentiable machine-learning functions can be trained to link the reduced omics feature set to key components of the dynamic model, resulting in a hybrid model. As proof of concept, we apply this framework to a high-dimensional proteomics dataset of $\textit{Saccharomyces cerevisiae}$. After identifying key intracellular proteins that correlate with cell growth, targeted dynamic experiments are designed, and key model parameters are captured as functions of the selected proteins using Gaussian processes. This approach captures the dynamic behavior of yeast strains under varying proteome profiles while estimating the uncertainty in the hybrid model's predictions. The outlined modeling framework is adaptable to other scenarios, such as integrating additional layers of omics data for more advanced multiscale biological systems, or employing alternative machine-learning methods to handle larger datasets. Overall, this study outlines a strategy for leveraging omics data to inform multiscale dynamic modeling in systems biology and bioprocess engineering.
The impressive performance of deep learning models, particularly Convolutional Neural Networks (CNNs), is often hindered by their lack of interpretability, rendering them "black boxes." This opacity raises concerns in critical areas like healthcare, finance, and autonomous systems, where trust and accountability are crucial. This paper introduces the QIXAI Framework (Quantum-Inspired Explainable AI), a novel approach for enhancing neural network interpretability through quantum-inspired techniques. By utilizing principles from quantum mechanics, such as Hilbert spaces, superposition, entanglement, and eigenvalue decomposition, the QIXAI framework reveals how different layers of neural networks process and combine features to make decisions. We critically assess model-agnostic methods like SHAP and LIME, as well as techniques like Layer-wise Relevance Propagation (LRP), highlighting their limitations in providing a comprehensive view of neural network operations. The QIXAI framework overcomes these limitations by offering deeper insights into feature importance, inter-layer dependencies, and information propagation. A CNN for malaria parasite detection is used as a case study to demonstrate how quantum-inspired methods like Singular Value Decomposition (SVD), Principal Component Analysis (PCA), and Mutual Information (MI) provide interpretable explanations of model behavior. Additionally, we explore the extension of QIXAI to other architectures, including Recurrent Neural Networks (RNNs), Long Short-Term Memory (LSTM) networks, Transformers, and Natural Language Processing (NLP) models, and its application to generative models and time-series analysis. The framework applies to both quantum and classical systems, demonstrating its potential to improve interpretability and transparency across a range of models, advancing the broader goal of developing trustworthy AI systems.
Extremely large-scale massive multiple-input multiple-output (XL-MIMO) is one of the key technologies for next-generation wireless communication systems. However, acquiring the accurate high-dimensional channel matrix of XL-MIMO remains a pressing challenge due to the intractable channel property and the high complexity. In this paper, a Mixed Attention Transformer based Channel Estimation Neural Network (MAT-CENet) is developed, which is inspired by the Transformer encoder structure as well as organically integrates the feature map attention and spatial attention mechanisms to better grasp the unique characteristics of the XL-MIMO channel. By incorporating the multi-head attention layer as the core enabler, the insightful feature importance is captured and exploited effectively. A comprehensive complexity analysis for the proposed MAT-CENet is also provided. Simulation results show that MAT-CENet outperforms the state of the art in different propagation scenarios of near-, far- and hybrid-fields.