For software that relies on machine-learned functionality, model selection is key to finding the right model for the task with desired performance characteristics. Evaluating a model requires developers to i) select from many models (e.g. the Hugging face model repository), ii) select evaluation metrics and training strategy, and iii) tailor trade-offs based on the problem domain. However, current evaluation approaches are either ad-hoc resulting in sub-optimal model selection or brute force leading to wasted compute. In this work, we present \toolname, a novel tool to automatically select and evaluate models based on the application scenario provided in natural language. We leverage the reasoning capabilities of large language models to propose a training strategy and extract desired trade-offs from a problem description. \toolname~features a resource-efficient experimentation engine that integrates constraints and trade-offs based on the problem into the model selection process. Our preliminary evaluation demonstrates that \toolname{} is both efficient and accurate compared to ad-hoc evaluations and brute force. This work presents an important step toward energy-efficient tools to help reduce the environmental impact caused by the growing demand for software with machine-learned functionality.
Autonomous underwater vehicles are specialized platforms engineered for deep underwater operations. Critical to their functionality is autonomous navigation, typically relying on an inertial navigation system and a Doppler velocity log. In real-world scenarios, incomplete Doppler velocity log measurements occur, resulting in positioning errors and mission aborts. To cope with such situations, a model and learning approaches were derived. This paper presents a comparative analysis of two cutting-edge deep learning methodologies, namely LiBeamsNet and MissBeamNet, alongside a model-based average estimator. These approaches are evaluated for their efficacy in regressing missing Doppler velocity log beams when two beams are unavailable. In our study, we used data recorded by a DVL mounted on an autonomous underwater vehicle operated in the Mediterranean Sea. We found that both deep learning architectures outperformed model-based approaches by over 16% in velocity prediction accuracy.
We have described a novel approach for training tabular data using the TabTransformer model with self-supervised learning. Traditional machine learning models for tabular data, such as GBDT are being widely used though our paper examines the effectiveness of the TabTransformer which is a Transformer based model optimised specifically for tabular data. The TabTransformer captures intricate relationships and dependencies among features in tabular data by leveraging the self-attention mechanism of Transformers. We have used a self-supervised learning approach in this study, where the TabTransformer learns from unlabelled data by creating surrogate supervised tasks, eliminating the need for the labelled data. The aim is to find the most effective TabTransformer model representation of categorical and numerical features. To address the challenges faced during the construction of various input settings into the Transformers. Furthermore, a comparative analysis is also been conducted to examine performance of the TabTransformer model against baseline models such as MLP and supervised TabTransformer. The research has presented with a novel approach by creating various variants of TabTransformer model namely, Binned-TT, Vanilla-MLP-TT, MLP- based-TT which has helped to increase the effective capturing of the underlying relationship between various features of the tabular dataset by constructing optimal inputs. And further we have employed a self-supervised learning approach in the form of a masking-based unsupervised setting for tabular data. The findings shed light on the best way to represent categorical and numerical features, emphasizing the TabTransormer performance when compared to established machine learning models and other self-supervised learning methods.
We present a method for early detection of lymphatic fluid accumulation in lymphedema patients based on microwave imaging of the limb volume across an air gap. The proposed algorithm uses contour information of the imaged limb surface to approximate the wave propagation velocity locally to solve the eikonal equation for implementing the adjoint imaging operator. This modified backprojection algorithm results in focused imagery close to the limb surface where lymphatic fluid accumulation presents itself. Next, a deep neural network based on U-Net architecture is employed to identify the location and extent of the lymphatic fluid. Simulation studies with various upper and lower arm profiles compare the focusing performance of the proposed contour assisted backprojection imaging with the baseline imaging approach that assumes homogeneous media. The empirical results of the simulation experiments show that the proposed imaging method significantly improves the ability of the deepnet model to identify the location and the volume of the excess fluid in the limb.
Tracking ripening tomatoes is time consuming and labor intensive. Artificial intelligence technologies combined with those of computer vision can help users optimize the process of monitoring the ripening status of plants. To this end, we have proposed a tomato ripening monitoring approach based on deep learning in complex scenes. The objective is to detect mature tomatoes and harvest them in a timely manner. The proposed approach is declined in two parts. Firstly, the images of the scene are transmitted to the pre-processing layer. This process allows the detection of areas of interest (area of the image containing tomatoes). Then, these images are used as input to the maturity detection layer. This layer, based on a deep neural network learning algorithm, classifies the tomato thumbnails provided to it in one of the following five categories: green, brittle, pink, pale red, mature red. The experiments are based on images collected from the internet gathered through searches using tomato state across diverse languages including English, German, French, and Spanish. The experimental results of the maturity detection layer on a dataset composed of images of tomatoes taken under the extreme conditions, gave a good classification rate.
While GPUs are responsible for training the vast majority of state-of-the-art deep learning models, the implications of their architecture are often overlooked when designing new deep learning (DL) models. As a consequence, modifying a DL model to be more amenable to the target hardware can significantly improve the runtime performance of DL training and inference. In this paper, we provide a set of guidelines for users to maximize the runtime performance of their transformer models. These guidelines have been created by carefully considering the impact of various model hyperparameters controlling model shape on the efficiency of the underlying computation kernels executed on the GPU. We find the throughput of models with efficient model shapes is up to 39\% higher while preserving accuracy compared to models with a similar number of parameters but with unoptimized shapes.
Deep Learning has been successfully applied to many application domains, yet its advantages have been slow to emerge for time series forecasting. For example, in the well-known Makridakis (M) Competitions, hybrids of traditional statistical or machine learning techniques have only recently become the top performers. With the recent architectural advances in deep learning being applied to time series forecasting (e.g., encoder-decoders with attention, transformers, and graph neural networks), deep learning has begun to show significant advantages. Still, in the area of pandemic prediction, there remain challenges for deep learning models: the time series is not long enough for effective training, unawareness of accumulated scientific knowledge, and interpretability of the model. To this end, the development of foundation models (large deep learning models with extensive pre-training) allows models to understand patterns and acquire knowledge that can be applied to new related problems before extensive training data becomes available. Furthermore, there is a vast amount of knowledge available that deep learning models can tap into, including Knowledge Graphs and Large Language Models fine-tuned with scientific domain knowledge. There is ongoing research examining how to utilize or inject such knowledge into deep learning models. In this survey, several state-of-the-art modeling techniques are reviewed, and suggestions for further work are provided.
This paper investigates how adjustments to deep learning architectures impact model performance in image classification. Small-scale experiments generate initial insights although the trends observed are not consistent with the entire dataset. Filtering operations in the image processing pipeline are crucial, with image filtering before pre-processing yielding better results. The choice and order of layers as well as filter placement significantly impact model performance. This study provides valuable insights into optimizing deep learning models, with potential avenues for future research including collaborative platforms.
In this study, we explore the synergy of deep learning and financial market applications, focusing on pair trading. This market-neutral strategy is integral to quantitative finance and is apt for advanced deep-learning techniques. A pivotal challenge in pair trading is discerning temporal correlations among entities, necessitating the integration of diverse data modalities. Addressing this, we introduce a novel framework, Multi-modal Temporal Relation Graph Learning (MTRGL). MTRGL combines time series data and discrete features into a temporal graph and employs a memory-based temporal graph neural network. This approach reframes temporal correlation identification as a temporal graph link prediction task, which has shown empirical success. Our experiments on real-world datasets confirm the superior performance of MTRGL, emphasizing its promise in refining automated pair trading strategies.
Early diagnosis of Alzheimer Diagnostics (AD) is a challenging task due to its subtle and complex clinical symptoms. Deep learning-assisted medical diagnosis using image recognition techniques has become an important research topic in this field. The features have to accurately capture main variations of anatomical brain structures. However, time-consuming is expensive for feature extraction by deep learning training. This study proposes a novel Alzheimer's disease detection model based on Convolutional Neural Networks. The model utilizes a pre-trained ResNet network as the backbone, incorporating post-fusion algorithm for 3D medical images and attention mechanisms. The experimental results indicate that the employed 2D fusion algorithm effectively improves the model's training expense. And the introduced attention mechanism accurately weights important regions in images, further enhancing the model's diagnostic accuracy.
This paper presents a groundbreaking self-improving interference management framework tailored for wireless communications, integrating deep learning with uncertainty quantification to enhance overall system performance. Our approach addresses the computational challenges inherent in traditional optimization-based algorithms by harnessing deep learning models to predict optimal interference management solutions. A significant breakthrough of our framework is its acknowledgment of the limitations inherent in data-driven models, particularly in scenarios not adequately represented by the training dataset. To overcome these challenges, we propose a method for uncertainty quantification, accompanied by a qualifying criterion, to assess the trustworthiness of model predictions. This framework strategically alternates between model-generated solutions and traditional algorithms, guided by a criterion that assesses the prediction credibility based on quantified uncertainties. Experimental results validate the framework's efficacy, demonstrating its superiority over traditional deep learning models, notably in scenarios underrepresented in the training dataset. This work marks a pioneering endeavor in harnessing self-improving deep learning for interference management, through the lens of uncertainty quantification.
Molecular docking is an important tool for structure-based drug design, accelerating the efficiency of drug development. Complex and dynamic binding processes between proteins and small molecules require searching and sampling over a wide spatial range. Traditional docking by searching for possible binding sites and conformations is computationally complex and results poorly under blind docking. Quantum-inspired algorithms combining quantum properties and annealing show great advantages in solving combinatorial optimization problems. Inspired by this, we achieve an improved in blind docking by using quantum-inspired combined with gradients learned by deep learning in the encoded molecular space. Numerical simulation shows that our method outperforms traditional docking algorithms and deep learning-based algorithms over 10\%. Compared to the current state-of-the-art deep learning-based docking algorithm DiffDock, the success rate of Top-1 (RMSD<2) achieves an improvement from 33\% to 35\% in our same setup. In particular, a 6\% improvement is realized in the high-precision region(RMSD<1) on molecules data unseen in DiffDock, which demonstrates the well-generalized of our method.
Noise plays a crucial role in the regulation of cellular and organismal function and behavior. Exploring noise's impact is key to understanding fundamental biological processes, such as gene expression, signal transduction, and the mechanisms of development and evolution. Currently, a comprehensive method to quantify dynamical behavior of cellular noise within these biochemical systems is lacking. In this study, we introduce an optically-controlled perturbation system utilizing the light-sensitive Phytochrome B (PhyB) from \textit{Arabidopsis thaliana}, which enables precise noise modulation with high spatial-temporal resolution. Our system exhibits exceptional sensitivity to light, reacting consistently to pulsed light signals, distinguishing it from other photoreceptor-based promoter systems that respond to a single light wavelength. To characterize our system, we developed a stochastic model for phytochromes that accounts for photoactivation/deactivation, thermal reversion, and the dynamics of the light-activated gene promoter system. To precisely control our system, we determined the rate constants for this model using an omniscient deep neural network that can directly map rate constant combinations to time-dependent state joint distributions. By adjusting the activation rates through light intensity and degradation rates via N-terminal mutagenesis, we illustrate that out optical-controlled perturbation can effectively modulate molecular expression level as well as noise. Our results highlight the potential of employing an optically-controlled gene perturbation system as a noise-controlled stimulus source. This approach, when combined with the analytical capabilities of a sophisticated deep neural network, enables the accurate estimation of rate constants from observational data in a broad range of biochemical reaction networks.
Consider the nonparametric logistic regression problem. In the logistic regression, we usually consider the maximum likelihood estimator, and the excess risk is the expectation of the Kullback-Leibler (KL) divergence between the true and estimated conditional class probabilities. However, in the nonparametric logistic regression, the KL divergence could diverge easily, and thus, the convergence of the excess risk is difficult to prove or does not hold. Several existing studies show the convergence of the KL divergence under strong assumptions. In most cases, our goal is to estimate the true conditional class probabilities. Thus, instead of analyzing the excess risk itself, it suffices to show the consistency of the maximum likelihood estimator in some suitable metric. In this paper, using a simple unified approach for analyzing the nonparametric maximum likelihood estimator (NPMLE), we directly derive convergence rates of the NPMLE in the Hellinger distance under mild assumptions. Although our results are similar to the results in some existing studies, we provide simple and more direct proofs for these results. As an important application, we derive convergence rates of the NPMLE with fully connected deep neural networks and show that the derived rate nearly achieves the minimax optimal rate.
The wave equation is an important physical partial differential equation, and in recent years, deep learning has shown promise in accelerating or replacing traditional numerical methods for solving it. However, existing deep learning methods suffer from high data acquisition costs, low training efficiency, and insufficient generalization capability for boundary conditions. To address these issues, this paper proposes an unsupervised learning method for the wave equation based on finite difference residual constraints. We construct a novel finite difference residual constraint based on structured grids and finite difference methods, as well as an unsupervised training strategy, enabling convolutional neural networks to train without data and predict the forward propagation process of waves. Experimental results show that finite difference residual constraints have advantages over physics-informed neural networks (PINNs) type physical information constraints, such as easier fitting, lower computational costs, and stronger source term generalization capability, making our method more efficient in training and potent in application.
Photoplethysmography (PPG) is a highly promising device due to its advantages in portability, user-friendly operation, and non-invasive capabilities to measure a wide range of physiological information. Recent advancements in deep learning have demonstrated remarkable outcomes by leveraging PPG signals for tasks related to personal health management and other multifaceted applications. In this review, we systematically reviewed papers that applied deep learning models to process PPG data between January 1st of 2017 and July 31st of 2023 from Google Scholar, PubMed and Dimensions. Each paper is analyzed from three key perspectives: tasks, models, and data. We finally extracted 193 papers where different deep learning frameworks were used to process PPG signals. Based on the tasks addressed in these papers, we categorized them into two major groups: medical-related, and non-medical-related. The medical-related tasks were further divided into seven subgroups, including blood pressure analysis, cardiovascular monitoring and diagnosis, sleep health, mental health, respiratory monitoring and analysis, blood glucose analysis, as well as others. The non-medical-related tasks were divided into four subgroups, which encompass signal processing, biometric identification, electrocardiogram reconstruction, and human activity recognition. In conclusion, significant progress has been made in the field of using deep learning methods to process PPG data recently. This allows for a more thorough exploration and utilization of the information contained in PPG signals. However, challenges remain, such as limited quantity and quality of publicly available databases, a lack of effective validation in real-world scenarios, and concerns about the interpretability, scalability, and complexity of deep learning models. Moreover, there are still emerging research areas that require further investigation.
Purpose: To evaluate the quality of deep learning reconstruction for prospectively accelerated intraoperative magnetic resonance imaging (iMRI) during resective brain tumor surgery. Materials and Methods: Accelerated iMRI was performed during brain surgery using dual surface coils positioned around the area of resection. A deep learning (DL) model was trained on the fastMRI neuro dataset to mimic the data from the iMRI protocol. Evaluation was performed on imaging material from 40 patients imaged between 01.11.2021 - 01.06.2023 that underwent iMRI during tumor resection surgery. A comparative analysis was conducted between the conventional compressed sense (CS) method and the trained DL reconstruction method. Blinded evaluation of multiple image quality metrics was performed by two working neuro-radiologists and a working neurosurgeon on a 1 to 5 Likert scale (1=non diagnostic, 2=poor, 3=acceptable, 4=good, 5=excellent), and the favored reconstruction variant. Results: The DL reconstruction was strongly favored or favored over the CS reconstruction for 33/40, 39/40, and 8/40 of cases for reader 1, 2, and 3, respectively. Two of three readers consistently assigned higher ratings for the DL reconstructions, and the DL reconstructions had a higher score than their respective CS counterparts for 72%, 72%, and 14% of the cases for reader 1, 2, and 3, respectively. Still, the DL reconstructions exhibited shortcomings such as a striping artifact and reduced signal. Conclusion: DL shows promise to allow for high-quality reconstructions of intraoperative MRI with equal to or improved perceived spatial resolution, signal-to-noise ratio, diagnostic confidence, diagnostic conspicuity, and spatial resolution compared to compressed sense.
Image registration is an essential process for aligning features of interest from multiple images. With the recent development of deep learning techniques, image registration approaches have advanced to a new level. In this work, we present 'Rotation-Equivariant network and Transformers for Image Registration' (RoTIR), a deep-learning-based method for the alignment of fish scale images captured by light microscopy. This approach overcomes the challenge of arbitrary rotation and translation detection, as well as the absence of ground truth data. We employ feature-matching approaches based on Transformers and general E(2)-equivariant steerable CNNs for model creation. Besides, an artificial training dataset is employed for semi-supervised learning. Results show RoTIR successfully achieves the goal of fish scale image registration.
Pseudo-relevance feedback (PRF) can enhance average retrieval effectiveness over a sufficiently large number of queries. However, PRF often introduces a drift into the original information need, thus hurting the retrieval effectiveness of several queries. While a selective application of PRF can potentially alleviate this issue, previous approaches have largely relied on unsupervised or feature-based learning to determine whether a query should be expanded. In contrast, we revisit the problem of selective PRF from a deep learning perspective, presenting a model that is entirely data-driven and trained in an end-to-end manner. The proposed model leverages a transformer-based bi-encoder architecture. Additionally, to further improve retrieval effectiveness with this selective PRF approach, we make use of the model's confidence estimates to combine the information from the original and expanded queries. In our experiments, we apply this selective feedback on a number of different combinations of ranking and feedback models, and show that our proposed approach consistently improves retrieval effectiveness for both sparse and dense ranking models, with the feedback models being either sparse, dense or generative.
Cloud deep learning platforms provide cost-effective deep neural network (DNN) training for customers who lack computation resources. However, cloud systems are often untrustworthy and vulnerable to attackers, leading to growing concerns about model privacy. Recently, researchers have sought to protect data privacy in deep learning by leveraging CPU trusted execution environments (TEEs), which minimize the use of cryptography, but existing works failed to simultaneously utilize the computational resources of GPUs to assist in training and prevent model leakage. This paper presents Tempo, the first cloud-based deep learning system that cooperates with TEE and distributed GPUs for efficient DNN training with model confidentiality preserved. To tackle the challenge of preserving privacy while offloading linear algebraic operations from TEE to GPUs for efficient batch computation, we introduce a customized permutation-based obfuscation algorithm to blind both inputs and model parameters. An optimization mechanism that reduces encryption operations is proposed for faster weight updates during backpropagation to speed up training. We implement Tempo and evaluate it with both training and inference for two prevalent DNNs. Empirical results indicate that Tempo outperforms baselines and offers sufficient privacy protection.