Most existing methods for biomedical entity recognition task rely on explicit feature engineering where many features either are specific to a particular task or depends on output of other existing NLP tools. Neural architectures have been shown across various domains that efforts for explicit feature design can be reduced. In this work we propose an unified framework using bi-directional long short term memory network (BLSTM) for named entity recognition (NER) tasks in biomedical and clinical domains. Three important characteristics of the framework are as follows - (1) model learns contextual as well as morphological features using two different BLSTM in hierarchy, (2) model uses first order linear conditional random field (CRF) in its output layer in cascade of BLSTM to infer label or tag sequence, (3) model does not use any domain specific features or dictionary, i.e., in another words, same set of features are used in the three NER tasks, namely, disease name recognition (Disease NER), drug name recognition (Drug NER) and clinical entity recognition (Clinical NER). We compare performance of the proposed model with existing state-of-the-art models on the standard benchmark datasets of the three tasks. We show empirically that the proposed framework outperforms all existing models. Further our analysis of CRF layer and word-embedding obtained using character based embedding show their importance.
Simultaneous administration of multiple drugs can have synergistic or antagonistic effects as one drug can affect activities of other drugs. Synergistic effects lead to improved therapeutic outcomes, whereas, antagonistic effects can be life-threatening, may lead to increased healthcare cost, or may even cause death. Thus identification of unknown drug-drug interaction (DDI) is an important concern for efficient and effective healthcare. Although multiple resources for DDI exist, they are often unable to keep pace with rich amount of information available in fast growing biomedical texts. Most existing methods model DDI extraction from text as a classification problem and mainly rely on handcrafted features. Some of these features further depend on domain specific tools. Recently neural network models using latent features have been shown to give similar or better performance than the other existing models dependent on handcrafted features. In this paper, we present three models namely, {\it B-LSTM}, {\it AB-LSTM} and {\it Joint AB-LSTM} based on long short-term memory (LSTM) network. All three models utilize word and position embedding as latent features and thus do not rely on explicit feature engineering. Further use of bidirectional long short-term memory (Bi-LSTM) networks allow implicit feature extraction from the whole sentence. The two models, {\it AB-LSTM} and {\it Joint AB-LSTM} also use attentive pooling in the output of Bi-LSTM layer to assign weights to features. Our experimental results on the SemEval-2013 DDI extraction dataset show that the {\it Joint AB-LSTM} model outperforms all the existing methods, including those relying on handcrafted features. The other two proposed LSTM models also perform competitively with state-of-the-art methods.
Feature engineering has been the key to the success of many prediction models. However, the process is non-trivial and often requires manual feature engineering or exhaustive searching. DNNs are able to automatically learn feature interactions; however, they generate all the interactions implicitly, and are not necessarily efficient in learning all types of cross features. In this paper, we propose the Deep & Cross Network (DCN) which keeps the benefits of a DNN model, and beyond that, it introduces a novel cross network that is more efficient in learning certain bounded-degree feature interactions. In particular, DCN explicitly applies feature crossing at each layer, requires no manual feature engineering, and adds negligible extra complexity to the DNN model. Our experimental results have demonstrated its superiority over the state-of-art algorithms on the CTR prediction dataset and dense classification dataset, in terms of both model accuracy and memory usage.
Automated detection of abnormalities in data has been studied in research area in recent years because of its diverse applications in practice including video surveillance, industrial damage detection and network intrusion detection. However, building an effective anomaly detection system is a non-trivial task since it requires to tackle challenging issues of the shortage of annotated data, inability of defining anomaly objects explicitly and the expensive cost of feature engineering procedure. Unlike existing appoaches which only partially solve these problems, we develop a unique framework to cope the problems above simultaneously. Instead of hanlding with ambiguous definition of anomaly objects, we propose to work with regular patterns whose unlabeled data is abundant and usually easy to collect in practice. This allows our system to be trained completely in an unsupervised procedure and liberate us from the need for costly data annotation. By learning generative model that capture the normality distribution in data, we can isolate abnormal data points that result in low normality scores (high abnormality scores). Moreover, by leverage on the power of generative networks, i.e. energy-based models, we are also able to learn the feature representation automatically rather than replying on hand-crafted features that have been dominating anomaly detection research over many decades. We demonstrate our proposal on the specific application of video anomaly detection and the experimental results indicate that our method performs better than baselines and are comparable with state-of-the-art methods in many benchmark video anomaly detection datasets.
Sales forecast is an essential task in E-commerce and has a crucial impact on making informed business decisions. It can help us to manage the workforce, cash flow and resources such as optimizing the supply chain of manufacturers etc. Sales forecast is a challenging problem in that sales is affected by many factors including promotion activities, price changes, and user preferences etc. Traditional sales forecast techniques mainly rely on historical sales data to predict future sales and their accuracies are limited. Some more recent learning-based methods capture more information in the model to improve the forecast accuracy. However, these methods require case-by-case manual feature engineering for specific commercial scenarios, which is usually a difficult, time-consuming task and requires expert knowledge. To overcome the limitations of existing methods, we propose a novel approach in this paper to learn effective features automatically from the structured data using the Convolutional Neural Network (CNN). When fed with raw log data, our approach can automatically extract effective features from that and then forecast sales using those extracted features. We test our method on a large real-world dataset from CaiNiao.com and the experimental results validate the effectiveness of our method.
Humans develop a common sense of style compatibility between items based on their attributes. We seek to automatically answer questions like "Does this shirt go well with that pair of jeans?" In order to answer these kinds of questions, we attempt to model human sense of style compatibility in this paper. The basic assumption of our approach is that most of the important attributes for a product in an online store are included in its title description. Therefore it is feasible to learn style compatibility from these descriptions. We design a Siamese Convolutional Neural Network architecture and feed it with title pairs of items, which are either compatible or incompatible. Those pairs will be mapped from the original space of symbolic words into some embedded style space. Our approach takes only words as the input with few preprocessing and there is no laborious and expensive feature engineering.
This paper presents an empirical study of two widely-used sequence prediction models, Conditional Random Fields (CRFs) and Long Short-Term Memory Networks (LSTMs), on two fundamental tasks for Vietnamese text processing, including part-of-speech tagging and named entity recognition. We show that a strong lower bound for labeling accuracy can be obtained by relying only on simple word-based features with minimal hand-crafted feature engineering, of 90.65\% and 86.03\% performance scores on the standard test sets for the two tasks respectively. In particular, we demonstrate empirically the surprising efficiency of word embeddings in both of the two tasks, with both of the two models. We point out that the state-of-the-art LSTMs model does not always outperform significantly the traditional CRFs model, especially on moderate-sized data sets. Finally, we give some suggestions and discussions for efficient use of sequence labeling models in practical applications.
Argument labeling of explicit discourse relations is a challenging task. The state of the art systems achieve slightly above 55% F-measure but require hand-crafted features. In this paper, we propose a Long Short Term Memory (LSTM) based model for argument labeling. We experimented with multiple configurations of our model. Using the PDTB dataset, our best model achieved an F1 measure of 23.05% without any feature engineering. This is significantly higher than the 20.52% achieved by the state of the art RNN approach, but significantly lower than the feature based state of the art systems. On the other hand, because our approach learns only from the raw dataset, it is more widely applicable to multiple textual genres and languages.
In real-world, our DNA is unique but many people share names. This phenomenon often causes erroneous aggregation of documents of multiple persons who are namesake of one another. Such mistakes deteriorate the performance of document retrieval, web search, and more seriously, cause improper attribution of credit or blame in digital forensic. To resolve this issue, the name disambiguation task is designed which aims to partition the documents associated with a name reference such that each partition contains documents pertaining to a unique real-life person. Existing solutions to this task substantially rely on feature engineering, such as biographical feature extraction, or construction of auxiliary features from Wikipedia. However, for many scenarios, such features may be costly to obtain or unavailable due to the risk of privacy violation. In this work, we propose a novel name disambiguation method. Our proposed method is non-intrusive of privacy because instead of using attributes pertaining to a real-life person, our method leverages only relational data in the form of anonymized graphs. In the methodological aspect, the proposed method uses a novel representation learning model to embed each document in a low dimensional vector space where name disambiguation can be solved by a hierarchical agglomerative clustering algorithm. Our experimental results demonstrate that the proposed method is significantly better than the existing name disambiguation methods working in a similar setting.
We introduce an unsupervised discriminative model for the task of retrieving experts in online document collections. We exclusively employ textual evidence and avoid explicit feature engineering by learning distributed word representations in an unsupervised way. We compare our model to state-of-the-art unsupervised statistical vector space and probabilistic generative approaches. Our proposed log-linear model achieves the retrieval performance levels of state-of-the-art document-centric methods with the low inference cost of so-called profile-centric approaches. It yields a statistically significant improved ranking over vector space and generative models in most cases, matching the performance of supervised methods on various benchmarks. That is, by using solely text we can do as well as methods that work with external evidence and/or relevance feedback. A contrastive analysis of rankings produced by discriminative and generative approaches shows that they have complementary strengths due to the ability of the unsupervised discriminative model to perform semantic matching.
While machine learning and artificial intelligence have long been applied in networking research, the bulk of such works has focused on supervised learning. Recently there has been a rising trend of employing unsupervised machine learning using unstructured raw network data to improve network performance and provide services such as traffic engineering, anomaly detection, Internet traffic classification, and quality of service optimization. The interest in applying unsupervised learning techniques in networking emerges from their great success in other fields such as computer vision, natural language processing, speech recognition, and optimal control (e.g., for developing autonomous self-driving cars). Unsupervised learning is interesting since it can unconstrain us from the need of labeled data and manual handcrafted feature engineering thereby facilitating flexible, general, and automated methods of machine learning. The focus of this survey paper is to provide an overview of the applications of unsupervised learning in the domain of networking. We provide a comprehensive survey highlighting the recent advancements in unsupervised learning techniques and describe their applications for various learning tasks in the context of networking. We also provide a discussion on future directions and open research issues, while also identifying potential pitfalls. While a few survey papers focusing on the applications of machine learning in networking have previously been published, a survey of similar scope and breadth is missing in literature. Through this paper, we advance the state of knowledge by carefully synthesizing the insights from these survey papers while also providing contemporary coverage of recent advances.
Feature engineering is a crucial step in the process of predictive modeling. It involves the transformation of given feature space, typically using mathematical functions, with the objective of reducing the modeling error for a given target. However, there is no well-defined basis for performing effective feature engineering. It involves domain knowledge, intuition, and most of all, a lengthy process of trial and error. The human attention involved in overseeing this process significantly influences the cost of model generation. We present a new framework to automate feature engineering. It is based on performance driven exploration of a transformation graph, which systematically and compactly enumerates the space of given options. A highly efficient exploration strategy is derived through reinforcement learning on past examples.
An electroencephalography (EEG) based brain activity recognition is a fundamental field of study for a number of significant applications such as intention prediction, appliance control, and neurological disease diagnosis in smart home and smart healthcare domains. Existing techniques mostly focus on binary brain activity recognition for a single person, which limits their deployment in wider and complex practical scenarios. Therefore, multi-person and multi-class brain activity recognition has obtained popularity recently. Another challenge faced by brain activity recognition is the low recognition accuracy due to the massive noises and the low signal-to-noise ratio in EEG signals. Moreover, the feature engineering in EEG processing is time-consuming and highly re- lies on the expert experience. In this paper, we attempt to solve the above challenges by proposing an approach which has better EEG interpretation ability via raw Electroencephalography (EEG) signal analysis for multi-person and multi-class brain activity recognition. Specifically, we analyze inter-class and inter-person EEG signal characteristics, based on which to capture the discrepancy of inter-class EEG data. Then, we adopt an Autoencoder layer to automatically refine the raw EEG signals by eliminating various artifacts. We evaluate our approach on both a public and a local EEG datasets and conduct extensive experiments to explore the effect of several factors (such as normalization methods, training data size, and Autoencoder hidden neuron size) on the recognition results. The experimental results show that our approach achieves a high accuracy comparing to competitive state-of-the-art methods, indicating its potential in promoting future research on multi-person EEG recognition.
Parallel sentence extraction is a task addressing the data sparsity problem found in multilingual natural language processing applications. We propose an end-to-end deep neural network approach to detect translational equivalence between sentences in two different languages. In contrast to previous approaches, which typically rely on multiples models and various word alignment features, by leveraging continuous vector representation of sentences we remove the need of any domain specific feature engineering. Using a siamese bidirectional recurrent neural networks, our results against a strong baseline based on a state-of-the-art parallel sentence extraction system show a significant improvement in both the quality of the extracted parallel sentences and the translation performance of statistical machine translation systems. We believe this study is the first one to investigate deep learning for the parallel sentence extraction task.
Clickbait is a pejorative term describing web content that is aimed at generating online advertising revenue, especially at the expense of quality or accuracy, relying on sensationalist headlines or eye-catching thumbnail pictures to attract click-throughs and to encourage forwarding of the material over online social networks. We use distributed word representations of the words in the title as features to identify clickbaits in online news media. We train a machine learning model using linear regression to predict the cickbait score of a given tweet. Our methods achieve an F1-score of 64.98\% and an MSE of 0.0791. Compared to other methods, our method is simple, fast to train, does not require extensive feature engineering and yet moderately effective.
In building intelligent transportation systems such as taxi or rideshare services, accurate prediction of travel time and distance is crucial for customer experience and resource management. Using the NYC taxi dataset, which contains taxi trips data collected from GPS-enabled taxis [23], this paper investigates the use of deep neural networks to jointly predict taxi trip time and distance. We propose a model, called ST-NN (Spatio-Temporal Neural Network), which first predicts the travel distance between an origin and a destination GPS coordinate, then combines this prediction with the time of day to predict the travel time. The beauty of ST-NN is that it uses only the raw trips data without requiring further feature engineering and provides a joint estimate of travel time and distance. We compare the performance of ST-NN to that of state-of-the-art travel time estimation methods, and we observe that the proposed approach generalizes better than state-of-the-art methods. We show that ST-NN approach significantly reduces the mean absolute error for both predicted travel time and distance, about 17% for travel time prediction. We also observe that the proposed approach is more robust to outliers present in the dataset by testing the performance of ST-NN on the datasets with and without outliers.
Clickbait detection in tweets remains an elusive challenge. In this paper, we describe the solution for the Zingel Clickbait Detector at the Clickbait Challenge 2017, which is capable of evaluating each tweet's level of click baiting. We first reformat the regression problem as a multi-classification problem, based on the annotation scheme. To perform multi-classification, we apply a token-level, self-attentive mechanism on the hidden states of bi-directional Gated Recurrent Units (biGRU), which enables the model to generate tweets' task-specific vector representations by attending to important tokens. The self-attentive neural network can be trained end-to-end, without involving any manual feature engineering. Our detector ranked first in the final evaluation of Clickbait Challenge 2017.
We propose an end-to-end neural network to predict the geolocation of a tweet. The network takes as input a number of raw Twitter metadata such as the tweet message and associated user account information. Our model is language independent, and despite minimal feature engineering, it is interpretable and capable of learning location indicative words and timing patterns. Compared to state-of-the-art systems, our model outperforms them by 2%-6%. Additionally, we propose extensions to the model to compress representation learnt by the network into binary codes. Experiments show that it produces compact codes compared to benchmark hashing algorithms. An implementation of the model is released publicly.
In this paper, we present an automated feature engineering based approach to dramatically reduce false positives in fraud prediction. False positives plague the fraud prediction industry. It is estimated that only 1 in 5 declared as fraud are actually fraud and roughly 1 in every 6 customers have had a valid transaction declined in the past year. To address this problem, we use the Deep Feature Synthesis algorithm to automatically derive behavioral features based on the historical data of the card associated with a transaction. We generate 237 features (>100 behavioral patterns) for each transaction, and use a random forest to learn a classifier. We tested our machine learning model on data from a large multinational bank and compared it to their existing solution. On an unseen data of 1.852 million transactions, we were able to reduce the false positives by 54% and provide a savings of 190K euros. We also assess how to deploy this solution, and whether it necessitates streaming computation for real time scoring. We found that our solution can maintain similar benefits even when historical features are computed once every 7 days.
Health related social media mining is a valuable apparatus for the early recognition of the diverse antagonistic medicinal conditions. Mostly, the existing methods are based on machine learning with knowledge-based learning. This working note presents the Recurrent neural network (RNN) and Long short-term memory (LSTM) based embedding for automatic health text classification in the social media mining. For each task, two systems are built and that classify the tweet at the tweet level. RNN and LSTM are used for extracting features and non-linear activation function at the last layer facilitates to distinguish the tweets of different categories. The experiments are conducted on 2nd Social Media Mining for Health Applications Shared Task at AMIA 2017. The experiment results are considerable; however the proposed method is appropriate for the health text classification. This is primarily due to the reason that, it doesn't rely on any feature engineering mechanisms.