Despite the recent success of Graph Neural Networks (GNNs), it remains challenging to train GNNs on large-scale graphs due to neighbor explosions. As a remedy, distributed computing becomes a promising solution by leveraging abundant computing resources (e.g., GPU). However, the node dependency of graph data increases the difficulty of achieving high concurrency in distributed GNN training, which suffers from the massive communication overhead. To address it, Historical value approximation is deemed a promising class of distributed training techniques. It utilizes an offline memory to cache historical information (e.g., node embedding) as an affordable approximation of the exact value and achieves high concurrency. However, such benefits come at the cost of involving dated training information, leading to staleness, imprecision, and convergence issues. To overcome these challenges, this paper proposes SAT (Staleness-Alleviated Training), a novel and scalable distributed GNN training framework that reduces the embedding staleness adaptively. The key idea of SAT is to model the GNN's embedding evolution as a temporal graph and build a model upon it to predict future embedding, which effectively alleviates the staleness of the cached historical embedding. We propose an online algorithm to train the embedding predictor and the distributed GNN alternatively and further provide a convergence analysis. Empirically, we demonstrate that SAT can effectively reduce embedding staleness and thus achieve better performance and convergence speed on multiple large-scale graph datasets.
During neurosurgery, medical images of the brain are used to locate tumors and critical structures, but brain tissue shifts make pre-operative images unreliable for accurate removal of tumors. Intra-operative imaging can track these deformations but is not a substitute for pre-operative data. To address this, we use Dynamic Data-Driven Non-Rigid Registration (NRR), a complex and time-consuming image processing operation that adjusts the pre-operative image data to account for intra-operative brain shift. Our review explores a specific NRR method for registering brain MRI during image-guided neurosurgery and examines various strategies for improving the accuracy and speed of the NRR method. We demonstrate that our implementation enables NRR results to be delivered within clinical time constraints while leveraging Distributed Computing and Machine Learning to enhance registration accuracy by identifying optimal parameters for the NRR method. Additionally, we highlight challenges associated with its use in the operating room.
Advanced Air Mobility (AAM) introduces a new, efficient mode of transportation with the use of vehicle autonomy and electrified aircraft to provide increasingly autonomous transportation between previously underserved markets. Safe and efficient navigation of low altitude aircraft through highly dense environments requires the integration of a multitude of complex observations, such as surveillance, knowledge of vehicle dynamics, and weather. The processing and reasoning on these observations pose challenges due to the various sources of uncertainty in the information while ensuring cooperation with a variable number of aircraft in the airspace. These challenges coupled with the requirement to make safety-critical decisions in real-time rule out the use of conventional separation assurance techniques. We present a decentralized reinforcement learning framework to provide autonomous self-separation capabilities within AAM corridors with the use of speed and vertical maneuvers. The problem is formulated as a Markov Decision Process and solved by developing a novel extension to the sample-efficient, off-policy soft actor-critic (SAC) algorithm. We introduce the use of attention networks for variable-length observation processing and a distributed computing architecture to achieve high training sample throughput as compared to existing approaches. A comprehensive numerical study shows that the proposed framework can ensure safe and efficient separation of aircraft in high density, dynamic environments with various sources of uncertainty.
Linear regression is a fundamental and primitive problem in supervised machine learning, with applications ranging from epidemiology to finance. In this work, we propose methods for speeding up distributed linear regression. We do so by leveraging randomized techniques, while also ensuring security and straggler resiliency in asynchronous distributed computing systems. Specifically, we randomly rotate the basis of the system of equations and then subsample blocks, to simultaneously secure the information and reduce the dimension of the regression problem. In our setup, the basis rotation corresponds to an encoded encryption in an approximate gradient coding scheme, and the subsampling corresponds to the responses of the non-straggling servers in the centralized coded computing framework. This results in a distributive iterative stochastic approach for matrix compression and steepest descent.
Industry 4.0 and Internet of Things (IoT) technologies unlock unprecedented amount of data from factory production, posing big data challenges in volume and variety. In that context, distributed computing solutions such as cloud systems are leveraged to parallelise the data processing and reduce computation time. As the cloud systems become increasingly popular, there is increased demand that more users that were originally not cloud experts (such as data scientists, domain experts) deploy their solutions on the cloud systems. However, it is non-trivial to address both the high demand for cloud system users and the excessive time required to train them. To this end, we propose SemCloud, a semantics-enhanced cloud system, that couples cloud system with semantic technologies and machine learning. SemCloud relies on domain ontologies and mappings for data integration, and parallelises the semantic data integration and data analysis on distributed computing nodes. Furthermore, SemCloud adopts adaptive Datalog rules and machine learning for automated resource configuration, allowing non-cloud experts to use the cloud system. The system has been evaluated in industrial use case with millions of data, thousands of repeated runs, and domain users, showing promising results.
We propose a distributed bundle adjustment (DBA) method using the exact Levenberg-Marquardt (LM) algorithm for super large-scale datasets. Most of the existing methods partition the global map to small ones and conduct bundle adjustment in the submaps. In order to fit the parallel framework, they use approximate solutions instead of the LM algorithm. However, those methods often give sub-optimal results. Different from them, we utilize the exact LM algorithm to conduct global bundle adjustment where the formation of the reduced camera system (RCS) is actually parallelized and executed in a distributed way. To store the large RCS, we compress it with a block-based sparse matrix compression format (BSMC), which fully exploits its block feature. The BSMC format also enables the distributed storage and updating of the global RCS. The proposed method is extensively evaluated and compared with the state-of-the-art pipelines using both synthetic and real datasets. Preliminary results demonstrate the efficient memory usage and vast scalability of the proposed method compared with the baselines. For the first time, we conducted parallel bundle adjustment using LM algorithm on a real datasets with 1.18 million images and a synthetic dataset with 10 million images (about 500 times that of the state-of-the-art LM-based BA) on a distributed computing system.
Effective resource allocation in sensor networks, IoT systems, and distributed computing is essential for applications such as environmental monitoring, surveillance, and smart infrastructure. Sensors or agents must optimize their resource allocation to maximize the accuracy of parameter estimation. In this work, we consider a group of sensors or agents, each sampling from a different variable of a multivariate Gaussian distribution and having a different estimation objective. We formulate a sensor or agent's data collection and collaboration policy design problem as a Fisher information maximization (or Cramer-Rao bound minimization) problem. This formulation captures a novel trade-off in energy use, between locally collecting univariate samples and collaborating to produce multivariate samples. When knowledge of the correlation between variables is available, we analytically identify two cases: (1) where the optimal data collection policy entails investing resources to transfer information for collaborative sampling, and (2) where knowledge of the correlation between samples cannot enhance estimation efficiency. When knowledge of certain correlations is unavailable, but collaboration remains potentially beneficial, we propose novel approaches that apply multi-armed bandit algorithms to learn the optimal data collection and collaboration policy in our sequential distributed parameter estimation problem. We illustrate the effectiveness of the proposed algorithms, DOUBLE-F, DOUBLE-Z, UCB-F, UCB-Z, through simulation.
Modern advancements in large-scale machine learning would be impossible without the paradigm of data-parallel distributed computing. Since distributed computing with large-scale models imparts excessive pressure on communication channels, significant recent research has been directed toward co-designing communication compression strategies and training algorithms with the goal of reducing communication costs. While pure data parallelism allows better data scaling, it suffers from poor model scaling properties. Indeed, compute nodes are severely limited by memory constraints, preventing further increases in model size. For this reason, the latest achievements in training giant neural network models also rely on some form of model parallelism. In this work, we take a closer theoretical look at Independent Subnetwork Training (IST), which is a recently proposed and highly effective technique for solving the aforementioned problems. We identify fundamental differences between IST and alternative approaches, such as distributed methods with compressed communication, and provide a precise analysis of its optimization performance on a quadratic model.
Visual retrieval tasks such as image retrieval and person re-identification (Re-ID) aim at effectively and thoroughly searching images with similar content or the same identity. After obtaining retrieved examples, re-ranking is a widely adopted post-processing step to reorder and improve the initial retrieval results by making use of the contextual information from semantically neighboring samples. Prevailing re-ranking approaches update distance metrics and mostly rely on inefficient crosscheck set comparison operations while computing expanded neighbors based distances. In this work, we present an efficient re-ranking method which refines initial retrieval results by updating features. Specifically, we reformulate re-ranking based on Graph Convolution Networks (GCN) and propose a novel Graph Convolution based Re-ranking (GCR) for visual retrieval tasks via feature propagation. To accelerate computation for large-scale retrieval, a decentralized and synchronous feature propagation algorithm which supports parallel or distributed computing is introduced. In particular, the plain GCR is extended for cross-camera retrieval and an improved feature propagation formulation is presented to leverage affinity relationships across different cameras. It is also extended for video-based retrieval, and Graph Convolution based Re-ranking for Video (GCRV) is proposed by mathematically deriving a novel profile vector generation method for the tracklet. Without bells and whistles, the proposed approaches achieve state-of-the-art performances on seven benchmark datasets from three different tasks, i.e., image retrieval, person Re-ID and video-based person Re-ID.
Distributed computing is critically important for modern statistical analysis. Herein, we develop a distributed quasi-Newton (DQN) framework with excellent statistical, computation, and communication efficiency. In the DQN method, no Hessian matrix inversion or communication is needed. This considerably reduces the computation and communication complexity of the proposed method. Notably, related existing methods only analyze numerical convergence and require a diverging number of iterations to converge. However, we investigate the statistical properties of the DQN method and theoretically demonstrate that the resulting estimator is statistically efficient over a small number of iterations under mild conditions. Extensive numerical analyses demonstrate the finite sample performance.
Quantum processing units (QPUs) are currently exclusively available from cloud vendors. However, with recent advancements, hosting QPUs is soon possible everywhere. Existing work has yet to draw from research in edge computing to explore systems exploiting mobile QPUs, or how hybrid applications can benefit from distributed heterogeneous resources. Hence, this work presents an architecture for Quantum Computing in the edge-cloud continuum. We discuss the necessity, challenges, and solution approaches for extending existing work on classical edge computing to integrate QPUs. We describe how warm-starting allows defining workflows that exploit the hierarchical resources spread across the continuum. Then, we introduce a distributed inference engine with hybrid classical-quantum neural networks (QNNs) to aid system designers in accommodating applications with complex requirements that incur the highest degree of heterogeneity. We propose solutions focusing on classical layer partitioning and quantum circuit cutting to demonstrate the potential of utilizing classical and quantum computation across the continuum. To evaluate the importance and feasibility of our vision, we provide a proof of concept that exemplifies how extending a classical partition method to integrate quantum circuits can improve the solution quality. Specifically, we implement a split neural network with optional hybrid QNN predictors. Our results show that extending classical methods with QNNs is viable and promising for future work.
Federated learning (FL) has gained popularity in clinical research in recent years to facilitate privacy-preserving collaboration. Structured data, one of the most prevalent forms of clinical data, has experienced significant growth in volume concurrently, notably with the widespread adoption of electronic health records in clinical practice. This review examines FL applications on structured medical data, identifies contemporary limitations and discusses potential innovations. We searched five databases, SCOPUS, MEDLINE, Web of Science, Embase, and CINAHL, to identify articles that applied FL to structured medical data and reported results following the PRISMA guidelines. Each selected publication was evaluated from three primary perspectives, including data quality, modeling strategies, and FL frameworks. Out of the 1160 papers screened, 34 met the inclusion criteria, with each article consisting of one or more studies that used FL to handle structured clinical/medical data. Of these, 24 utilized data acquired from electronic health records, with clinical predictions and association studies being the most common clinical research tasks that FL was applied to. Only one article exclusively explored the vertical FL setting, while the remaining 33 explored the horizontal FL setting, with only 14 discussing comparisons between single-site (local) and FL (global) analysis. The existing FL applications on structured medical data lack sufficient evaluations of clinically meaningful benefits, particularly when compared to single-site analyses. Therefore, it is crucial for future FL applications to prioritize clinical motivations and develop designs and methodologies that can effectively support and aid clinical practice and research.
The rapid development of parallel and distributed computing paradigms has brought about great revolution in computing. Thanks to the intrinsic parallelism of evolutionary computation (EC), it is natural to implement EC on parallel and distributed computing systems. On the one hand, the computing power provided by parallel computing systems can significantly improve the efficiency and scalability of EC. On the other hand, data are collected and processed in a distributed manner, which brings a novel development direction and new challenges to EC. In this paper, we intend to give a systematic review on distributed EC (DEC). First, a new taxonomy for DEC is proposed from top design mechanism to bottom implementation mechanism. Based on this taxonomy, existing studies on DEC are reviewed in terms of purpose, parallel structure of the algorithm, parallel model for implementation, and the implementation environment. Second, we clarify two major purposes of DEC, i.e., improving efficiency through parallel processing for centralized optimization and cooperating distributed individuals/sub-populations with partial information to perform distributed optimization. Third, noting that the latter purpose of DEC is an emerging and attractive trend for EC with the booming of spatially distributed paradigms, this paper gives a systematic definition of the distributed optimization and classifies it into dimension distributed-, data distributed-, and objective distributed-optimization problems. Formal formulations for these problems are provided and various DEC studies on these problems are reviewed. We also discuss challenges and potential research directions, aiming to enlighten the design of DEC and pave the way for future developments.
Given the ubiquity of non-separable optimization problems in real worlds, in this paper we analyze and extend the large-scale version of the well-known cooperative coevolution (CC), a divide-and-conquer black-box optimization framework, on non-separable functions. First, we reveal empirical reasons of when decomposition-based methods are preferred or not in practice on some non-separable large-scale problems, which have not been clearly pointed out in many previous CC papers. Then, we formalize CC to a continuous-game model via simplification, but without losing its essential property. Different from previous evolutionary game theory for CC, our new model provides a much simpler but useful viewpoint to analyze its convergence, since only the pure Nash equilibrium concept is needed and more general fitness landscapes can be explicitly considered. Based on convergence analyses, we propose a hierarchical decomposition strategy for better generalization, as for any decomposition, there is a risk of getting trapped into a suboptimal Nash equilibrium. Finally, we use powerful distributed computing to accelerate it under the recent multi-level learning framework, which combines the fine-tuning ability from decomposition with the invariance property of CMA-ES. Experiments on a set of high-dimensional test functions validate both its search performance and scalability (w.r.t. CPU cores) on a clustering computing platform with 400 CPU cores.
Recently, evolutionary computation (EC) has been promoted by machine learning, distributed computing, and big data technologies, resulting in new research directions of EC like distributed EC and surrogate-assisted EC. These advances have significantly improved the performance and the application scope of EC, but also trigger privacy leakages, such as the leakage of optimal results and surrogate model. Accordingly, evolutionary computation combined with privacy protection is becoming an emerging topic. However, privacy concerns in evolutionary computation lack a systematic exploration, especially for the object, motivation, position, and method of privacy protection. To this end, in this paper, we discuss three typical optimization paradigms (i.e., \textit{centralized optimization, distributed optimization, and data-driven optimization}) to characterize optimization modes of evolutionary computation and propose BOOM to sort out privacy concerns in evolutionary computation. Specifically, the centralized optimization paradigm allows clients to outsource optimization problems to the centralized server and obtain optimization solutions from the server. While the distributed optimization paradigm exploits the storage and computational power of distributed devices to solve optimization problems. Also, the data-driven optimization paradigm utilizes data collected in history to tackle optimization problems lacking explicit objective functions. Particularly, this paper adopts BOOM to characterize the object and motivation of privacy protection in three typical optimization paradigms and discusses potential privacy-preserving technologies balancing optimization performance and privacy guarantees in three typical optimization paradigms. Furthermore, this paper attempts to foresee some new research directions of privacy-preserving evolutionary computation.
We present a novel definition of an algorithm and its corresponding algorithm language called CoLweb. The merit of CoLweb [1] is that it makes algorithm design so versatile. That is, it forces us to a high-level, proof-carrying, distributed-style approach to algorithm design for both non-distributed computing and distributed one. We argue that this approach simplifies algorithm design. In addition, it unifies other approaches including recursive logical/functional algorithms, imperative algorithms, object-oriented imperative algorithms, neural-nets, interaction nets, proof-carrying code, etc. As an application, we refine Horn clause definitions into two kinds: blind-univerally-quantified (BUQ) ones and parallel-universally-quantified (PUQ) ones. BUQ definitions corresponds to the traditional ones such as those in Prolog where knowledgebase is $not$ expanding and its proof procedure is based on the backward chaining. On the other hand, in PUQ definitions, knowledgebase is $expanding$ and its proof procedure leads to forward chaining and {\it automatic memoization}.
An abundance of information about cancer exists online, but categorizing and extracting useful information from it is difficult. Almost all research within healthcare data processing is concerned with formal clinical data, but there is valuable information in non-clinical data too. The present study combines methods within distributed computing, text retrieval, clustering, and classification into a coherent and computationally efficient system, that can clarify cancer patient trajectories based on non-clinical and freely available information. We produce a fully-functional prototype that can retrieve, cluster and present information about cancer trajectories from non-clinical forum posts. We evaluate three clustering algorithms (MR-DBSCAN, DBSCAN, and HDBSCAN) and compare them in terms of Adjusted Rand Index and total run time as a function of the number of posts retrieved and the neighborhood radius. Clustering results show that neighborhood radius has the most significant impact on clustering performance. For small values, the data set is split accordingly, but high values produce a large number of possible partitions and searching for the best partition is hereby time-consuming. With a proper estimated radius, MR-DBSCAN can cluster 50000 forum posts in 46.1 seconds, compared to DBSCAN (143.4) and HDBSCAN (282.3). We conduct an interview with the Danish Cancer Society and present our software prototype. The organization sees a potential in software that can democratize online information about cancer and foresee that such systems will be required in the future.
Federated Learning (FL) has gained widespread popularity in recent years due to the fast booming of advanced machine learning and artificial intelligence along with emerging security and privacy threats. FL enables efficient model generation from local data storage of the edge devices without revealing the sensitive data to any entities. While this paradigm partly mitigates the privacy issues of users' sensitive data, the performance of the FL process can be threatened and reached a bottleneck due to the growing cyber threats and privacy violation techniques. To expedite the proliferation of FL process, the integration of blockchain for FL environments has drawn prolific attention from the people of academia and industry. Blockchain has the potential to prevent security and privacy threats with its decentralization, immutability, consensus, and transparency characteristic. However, if the blockchain mechanism requires costly computational resources, then the resource-constrained FL clients cannot be involved in the training. Considering that, this survey focuses on reviewing the challenges, solutions, and future directions for the successful deployment of blockchain in resource-constrained FL environments. We comprehensively review variant blockchain mechanisms that are suitable for FL process and discuss their trade-offs for a limited resource budget. Further, we extensively analyze the cyber threats that could be observed in a resource-constrained FL environment, and how blockchain can play a key role to block those cyber attacks. To this end, we highlight some potential solutions towards the coupling of blockchain and federated learning that can offer high levels of reliability, data privacy, and distributed computing performance.
Simulations of biomolecules have enormous potential to inform our understanding of biology but require extremely demanding calculations. For over twenty years, the Folding@home distributed computing project has pioneered a massively parallel approach to biomolecular simulation, harnessing the resources of citizen scientists across the globe. Here, we summarize the scientific and technical advances this perspective has enabled. As the project's name implies, the early years of Folding@home focused on driving advances in our understanding of protein folding by developing statistical methods for capturing long-timescale processes and facilitating insight into complex dynamical processes. Success laid a foundation for broadening the scope of Folding@home to address other functionally relevant conformational changes, such as receptor signaling, enzyme dynamics, and ligand binding. Continued algorithmic advances, hardware developments such as GPU-based computing, and the growing scale of Folding@home have enabled the project to focus on new areas where massively parallel sampling can be impactful. While previous work sought to expand toward larger proteins with slower conformational changes, new work focuses on large-scale comparative studies of different protein sequences and chemical compounds to better understand biology and inform the development of small molecule drugs. Progress on these fronts enabled the community to pivot quickly in response to the COVID-19 pandemic, expanding to become the world's first exascale computer and deploying this massive resource to provide insight into the inner workings of the SARS-CoV-2 virus and aid the development of new antivirals. This success provides a glimpse of what's to come as exascale supercomputers come online, and Folding@home continues its work.
Large deep learning models have shown great potential for delivering exceptional results in various applications. However, the training process can be incredibly challenging due to the models' vast parameter sizes, often consisting of hundreds of billions of parameters. Common distributed training methods, such as data parallelism, tensor parallelism, and pipeline parallelism, demand significant data communication throughout the process, leading to prolonged wait times for some machines in physically distant distributed systems. To address this issue, we propose a novel solution called Hulk, which utilizes a modified graph neural network to optimize distributed computing systems. Hulk not only optimizes data communication efficiency between different countries or even different regions within the same city, but also provides optimal distributed deployment of models in parallel. For example, it can place certain layers on a machine in a specific region or pass specific parameters of a model to a machine in a particular location. By using Hulk in experiments, we were able to improve the time efficiency of training large deep learning models on distributed systems by more than 20\%. Our open source collection of unlabeled data:https://github.com/DLYuanGod/Hulk.