Image-based jet analysis is built upon the jet image representation of jets that enables a direct connection between high energy physics and the fields of computer vision and deep learning. Through this connection, a wide array of new jet analysis techniques have emerged. In this text, we survey jet image based classification models, built primarily on the use of convolutional neural networks, examine the methods to understand what these models have learned and what is their sensitivity to uncertainties, and review the recent successes in moving these models from phenomenological studies to real world application on experiments at the LHC. Beyond jet classification, several other applications of jet image based techniques, including energy estimation, pileup noise reduction, data generation, and anomaly detection, are discussed.
Pre-trained language models have achieved state-of-the-art accuracies on various text classification tasks, e.g., sentiment analysis, natural language inference, and semantic textual similarity. However, the reliability of the fine-tuned text classifiers is an often underlooked performance criterion. For instance, one may desire a model that can detect out-of-distribution (OOD) samples (drawn far from training distribution) or be robust against domain shifts. We claim that one central obstacle to the reliability is the over-reliance of the model on a limited number of keywords, instead of looking at the whole context. In particular, we find that (a) OOD samples often contain in-distribution keywords, while (b) cross-domain samples may not always contain keywords; over-relying on the keywords can be problematic for both cases. In light of this observation, we propose a simple yet effective fine-tuning method, coined masked keyword regularization (MASKER), that facilitates context-based prediction. MASKER regularizes the model to reconstruct the keywords from the rest of the words and make low-confidence predictions without enough context. When applied to various pre-trained language models (e.g., BERT, RoBERTa, and ALBERT), we demonstrate that MASKER improves OOD detection and cross-domain generalization without degrading classification accuracy. Code is available at https://github.com/alinlab/MASKER.
This work validates the generalizability of MRI-based classification of Alzheimer's disease (AD) patients and controls (CN) to an external data set and to the task of prediction of conversion to AD in individuals with mild cognitive impairment (MCI). We used a conventional support vector machine (SVM) and a deep convolutional neural network (CNN) approach based on structural MRI scans that underwent either minimal pre-processing or more extensive pre-processing into modulated gray matter (GM) maps. Classifiers were optimized and evaluated using cross-validation in the ADNI (334 AD, 520 CN). Trained classifiers were subsequently applied to predict conversion to AD in ADNI MCI patients (231 converters, 628 non-converters) and in the independent Health-RI Parelsnoer data set. From this multi-center study representing a tertiary memory clinic population, we included 199 AD patients, 139 participants with subjective cognitive decline, 48 MCI patients converting to dementia, and 91 MCI patients who did not convert to dementia. AD-CN classification based on modulated GM maps resulted in a similar AUC for SVM (0.940) and CNN (0.933). Application to conversion prediction in MCI yielded significantly higher performance for SVM (0.756) than for CNN (0.742). In external validation, performance was slightly decreased. For AD-CN, it again gave similar AUCs for SVM (0.896) and CNN (0.876). For prediction in MCI, performances decreased for both SVM (0.665) and CNN (0.702). Both with SVM and CNN, classification based on modulated GM maps significantly outperformed classification based on minimally processed images. Deep and conventional classifiers performed equally well for AD classification and their performance decreased only slightly when applied to the external cohort. We expect that this work on external validation contributes towards translation of machine learning to clinical practice.
A commonly adopted approach to carry out detection tasks in medical imaging is to rely on an initial segmentation. However, this approach strongly depends on voxel-wise annotations which are repetitive and time-consuming to draw for medical experts. An interesting alternative to voxel-wise masks are so-called "weak" labels: these can either be coarse or oversized annotations that are less precise, but noticeably faster to create. In this work, we address the task of brain aneurysm detection as a patch-wise binary classification with weak labels, in contrast to related studies that rather use supervised segmentation methods and voxel-wise delineations. Our approach comes with the non-trivial challenge of the data set creation: as for most focal diseases, anomalous patches (with aneurysm) are outnumbered by those showing no anomaly, and the two classes usually have different spatial distributions. To tackle this frequent scenario of inherently imbalanced, spatially skewed data sets, we propose a novel, anatomically-driven approach by using a multi-scale and multi-input 3D Convolutional Neural Network (CNN). We apply our model to 214 subjects (83 patients, 131 controls) who underwent Time-Of-Flight Magnetic Resonance Angiography (TOF-MRA) and presented a total of 111 unruptured cerebral aneurysms. We compare two strategies for negative patch sampling that have an increasing level of difficulty for the network and we show how this choice can strongly affect the results. To assess whether the added spatial information helps improving performances, we compare our anatomically-informed CNN with a baseline, spatially-agnostic CNN. When considering the more realistic and challenging scenario including vessel-like negative patches, the former model attains the highest classification results (accuracy$\simeq$95\%, AUROC$\simeq$0.95, AUPR$\simeq$0.71), thus outperforming the baseline.
In this paper we propose a novel methodology to construct Optimal Classification Trees that takes into account that noisy labels may occur in the training sample. Our approach rests on two main elements: (1) the splitting rules for the classification trees are designed to maximize the separation margin between classes applying the paradigm of SVM; and (2) some of the labels of the training sample are allowed to be changed during the construction of the tree trying to detect the label noise. Both features are considered and integrated together to design the resulting Optimal Classification Tree. We present a Mixed Integer Non Linear Programming formulation for the problem, suitable to be solved using any of the available off-the-shelf solvers. The model is analyzed and tested on a battery of standard datasets taken from UCI Machine Learning repository, showing the effectiveness of our approach.
Self-attention networks have revolutionized natural language processing and are making impressive strides in image analysis tasks such as image classification and object detection. Inspired by this success, we investigate the application of self-attention networks to 3D point cloud processing. We design self-attention layers for point clouds and use these to construct self-attention networks for tasks such as semantic scene segmentation, object part segmentation, and object classification. Our Point Transformer design improves upon prior work across domains and tasks. For example, on the challenging S3DIS dataset for large-scale semantic scene segmentation, the Point Transformer attains an mIoU of 70.4% on Area 5, outperforming the strongest prior model by 3.3 absolute percentage points and crossing the 70% mIoU threshold for the first time.
Until recently, the most accurate methods for time series classification were limited by high computational complexity. ROCKET achieves state-of-the-art accuracy with a fraction of the computational expense of most existing methods by transforming input time series using random convolutional kernels, and using the transformed features to train a linear classifier. We reformulate ROCKET into a new method, MINIROCKET, making it up to 75 times faster on larger datasets, and making it almost deterministic (and optionally, with additional computational expense, fully deterministic), while maintaining essentially the same accuracy. Using this method, it is possible to train and test a classifier on all of 109 datasets from the UCR archive to state-of-the-art accuracy in less than 10 minutes. MINIROCKET is significantly faster than any other method of comparable accuracy (including ROCKET), and significantly more accurate than any other method of even roughly-similar computational expense. As such, we suggest that MINIROCKET should now be considered and used as the default variant of ROCKET.
In contrast to paraffin sections, frozen sections can be quickly generated during surgical interventions. This procedure allows surgeons to wait for histological findings during the intervention to base intra-operative decisions on the outcome of the histology. However, compared to paraffin sections, the quality of frozen sections is typically lower, leading to a higher ratio of miss-classification. In this work, we investigated the effect of the section type on automated decision support approaches for classification of thyroid cancer. This was enabled by a data set consisting of pairs of sections for individual patients. Moreover, we investigated, whether a frozen-to-paraffin translation could help to optimize classification scores. Finally, we propose a specific data augmentation strategy to deal with a small amount of training data and to increase classification accuracy even further.
Precision medicine has the potential to revolutionize healthcare, but much of the data for patients is locked away in unstructured free-text, limiting research and delivery of effective personalized treatments. Generating large annotated datasets for information extraction from clinical notes is often challenging and expensive due to the high level of expertise needed for high quality annotations. To enable natural language processing for small dataset sizes, we develop a novel enriched hierarchical annotation scheme and algorithm, Supervised Line Attention (SLA), and apply this algorithm to predicting categorical tumor attributes from kidney and colon cancer pathology reports from the University of California San Francisco (UCSF). Whereas previous work only annotated document level labels, we in addition ask the annotators to enrich the traditional label by asking them to also highlight the relevant line or potentially lines for the final label, which leads to a 20% increase of annotation time required per document. With the enriched annotations, we develop a simple and interpretable machine learning algorithm that first predicts the relevant lines in the document and then predicts the tumor attribute. Our results show across the small dataset sizes of 32, 64, 128, and 186 labeled documents per cancer, SLA only requires half the number of labeled documents as state-of-the-art methods to achieve similar or better micro-f1 and macro-f1 scores for the vast majority of comparisons that we made. Accounting for the increased annotation time, this leads to a 40% reduction in total annotation time over the state of the art.
Multilayer neural networks set the current state of the art for many technical classification problems. But, these networks are still, essentially, black boxes in terms of analyzing them and predicting their performance. Here, we develop a statistical theory for the one-layer perceptron and show that it can predict performances of a surprisingly large variety of neural networks with different architectures. A general theory of classification with perceptrons is developed by generalizing an existing theory for analyzing reservoir computing models and connectionist models for symbolic reasoning known as vector symbolic architectures. Our statistical theory offers three formulas leveraging the signal statistics with increasing detail. The formulas are analytically intractable, but can be evaluated numerically. The description level that captures maximum details requires stochastic sampling methods. Depending on the network model, the simpler formulas already yield high prediction accuracy. The quality of the theory predictions is assessed in three experimental settings, a memorization task for echo state networks (ESNs) from reservoir computing literature, a collection of classification datasets for shallow randomly connected networks, and the ImageNet dataset for deep convolutional neural networks. We find that the second description level of the perceptron theory can predict the performance of types of ESNs, which could not be described previously. The theory can predict deep multilayer neural networks by being applied to their output layer. While other methods for prediction of neural networks performance commonly require to train an estimator model, the proposed theory requires only the first two moments of the distribution of the postsynaptic sums in the output neurons. The perceptron theory compares favorably to other methods that do not rely on training an estimator model.
Cardiovascular diseases (CVDs) are the main cause of deaths all over the world. Heart murmurs are the most common abnormalities detected during the auscultation process. The two widely used publicly available phonocardiogram (PCG) datasets are from the PhysioNet/CinC (2016) and PASCAL (2011) challenges. The datasets are significantly different in terms of the tools used for data acquisition, clinical protocols, digital storages and signal qualities, making it challenging to process and analyze. In this work, we have used short-time Fourier transform (STFT) based spectrograms to learn the representative patterns of the normal and abnormal PCG signals. Spectrograms generated from both the datasets are utilized to perform three different studies: (i) train, validate and test different variants of convolutional neural network (CNN) models with PhysioNet dataset, (ii) train, validate and test the best performing CNN structure on combined PhysioNet-PASCAL dataset and (iii) finally, transfer learning technique is employed to train the best performing pre-trained network from the first study with PASCAL dataset. We propose a novel, less complex and relatively light custom CNN model for the classification of PhysioNet, combined and PASCAL datasets. The first study achieves an accuracy, sensitivity, specificity, precision and F1 score of 95.4%, 96.3%, 92.4%, 97.6% and 96.98% respectively while the second study shows accuracy, sensitivity, specificity, precision and F1 score of 94.2%, 95.5%, 90.3%, 96.8% and 96.1% respectively. Finally, the third study shows a precision of 98.29% on the noisy PASCAL dataset with transfer learning approach. All the three proposed approaches outperform most of the recent competing studies by achieving comparatively high classification accuracy and precision, which make them suitable for screening CVDs using PCG signals.
In this paper we investigate the usage of machine learning for interpreting measured sensor values in sensor modules. In particular we analyze the potential of artificial neural networks (ANNs) on low-cost micro-controllers with a few kilobytes of memory to semantically enrich data captured by sensors. The focus is on classifying temporal data series with a high level of reliability. Design and implementation of ANNs are analyzed considering Feed Forward Neural Networks (FFNNs) and Recurrent Neural Networks (RNNs). We validate the developed ANNs in a case study of optical hand gesture recognition on an 8-bit micro-controller. The best reliability was found for an FFNN with two layers and 1493 parameters requiring an execution time of 36 ms. We propose a workflow to develop ANNs for embedded devices.
Hate speech, quite common in the age of social media, at times harmless but can also cause mental trauma to someone or even riots in communities. Image of a religious symbol with derogatory comment or video of a man abusing a particular community, all become hate speech with its every modality (such as text, image, and audio) contributing towards it. Models based on a particular modality of hate speech post on social media are not useful, rather, we need models like multi-modal fusion models that consider both image and text while classifying hate speech. Text-image fusion models are heavily parameterized, hence we propose a quaternion neural network-based model having additional fusion components for each pair of modalities. The model is tested on the MMHS150K twitter dataset for hate speech classification. The model shows an almost 75% reduction in parameters and also benefits us in terms of storage space and training time while being at par in terms of performance as compared to its real counterpart.
Classification of quantum data is essential for quantum machine learning and near-term quantum technologies. In this paper, we propose a new hybrid quantum-classical framework for supervised quantum learning, which we call Variational Shadow Quantum Learning (VSQL). Our method in particular utilizes the classical shadows of quantum data, which fundamentally represent the side information of quantum data with respect to certain physical observables. Specifically, we first use variational shadow quantum circuits to extract classical features in a convolution way and then utilize a fully-connected neural network to complete the classification task. We show that this method could sharply reduce the number of parameters and thus better facilitate quantum circuit training. Simultaneously, less noise will be introduced since fewer quantum gates are employed in such shadow circuits. Moreover, we show that the Barren Plateau issue, a significant gradient vanishing problem in quantum machine learning, could be avoided in VSQL. Finally, we demonstrate the efficiency of VSQL in quantum classification via numerical experiments on the classification of quantum states and the recognition of multi-labeled handwritten digits. In particular, our VSQL approach outperforms existing variational quantum classifiers in the test accuracy in the binary case of handwritten digit recognition and notably requires much fewer parameters.
Since 2014, very deep convolutional neural networks have been proposed and become the must-have weapon for champions in all kinds of competition. In this report, a pipeline is introduced to perform the classification of smoking and calling by modifying the pretrained inception V3. Brightness enhancing based on deep learning is implemented to improve the classification of this classification task along with other useful training tricks. Based on the quality and quantity results, it can be concluded that this pipeline with small biased samples is practical and useful with high accuracy.
Objective: Systematic reviews of scholarly documents often provide complete and exhaustive summaries of literature relevant to a research question. However, well-done systematic reviews are expensive, time-demanding, and labor-intensive. Here, we propose an automatic document classification approach to significantly reduce the effort in reviewing documents. Methods: We first describe a manual document classification procedure that is used to curate a pertinent training dataset and then propose three classifiers: a keyword-guided method, a cluster analysis-based refined method, and a random forest approach that utilizes a large set of feature tokens. As an example, this approach is used to identify documents studying female sex workers that are assumed to contain content relevant to either HIV or violence. We compare the performance of the three classifiers by cross-validation and conduct a sensitivity analysis on the portion of data utilized in training the model. Results: The random forest approach provides the highest area under the curve (AUC) for both receiver operating characteristic (ROC) and precision/recall (PR). Analyses of precision and recall suggest that random forest could facilitate manually reviewing 20\% of the articles while containing 80\% of the relevant cases. Finally, we found a good classifier could be obtained by using a relatively small training sample size. Conclusions: In sum, the automated procedure of document classification presented here could improve both the precision and efficiency of systematic reviews, as well as facilitating live reviews, where reviews are updated regularly.
Objective. Epidemiological studies require data that are in alignment with the classifications established for occupations or economic activities. The classifications usually include hundreds of codes and titles. Manual coding of raw data may result in misclassification and be time consuming. The goal was to develop and test a web-tool, named Procode, for coding of free-texts against classifications and recoding between different classifications. Methods. Three text classifiers, i.e. Complement Naive Bayes (CNB), Support Vector Machine (SVM) and Random Forest Classifier (RFC), were investigated using a k-fold cross-validation. 30 000 free-texts with manually assigned classification codes of French classification of occupations (PCS) and French classification of activities (NAF) were available. For recoding, Procode integrated a workflow that converts codes of one classification to another according to existing crosswalks. Since this is a straightforward operation, only the recoding time was measured. Results. Among the three investigated text classifiers, CNB resulted in the best performance, where the classifier predicted accurately 57-81% and 63-83% classification codes for PCS and NAF, respectively. SVM lead to somewhat lower results (by 1-2%), while RFC coded accurately up to 30% of the data. The coding operation required one minute per 10 000 records, while the recoding was faster, i.e. 5-10 seconds. Conclusion. The algorithm integrated in Procode showed satisfactory performance, since the tool had to assign the right code by choosing between 500-700 different choices. Based on the results, the authors decided to implement CNB in Procode. In future, if another classifier shows a superior performance, an update will include the required modifications.
The paper presents our solutions for the MediaEval 2020 task namely FakeNews: Corona Virus and 5G Conspiracy Multimedia Twitter-Data-Based Analysis. The task aims to analyze tweets related to COVID-19 and 5G conspiracy theories to detect misinformation spreaders. The task is composed of two sub-tasks namely (i) text-based, and (ii) structure-based fake news detection. For the first task, we propose six different solutions relying on Bag of Words (BoW) and BERT embedding. Three of the methods aim at binary classification task by differentiating in 5G conspiracy and the rest of the COVID-19 related tweets while the rest of them treat the task as ternary classification problem. In the ternary classification task, our BoW and BERT based methods obtained an F1-score of .606% and .566% on the development set, respectively. On the binary classification, the BoW and BERT based solutions obtained an average F1-score of .666% and .693%, respectively. On the other hand, for structure-based fake news detection, we rely on Graph Neural Networks (GNNs) achieving an average ROC of .95% on the development set.
In medical fields, text classification is one of the most important tasks that can significantly reduce human workload through structured information digitization and intelligent decision support. Despite the popularity of learning-based text classification techniques, it is hard for human to understand or manually fine-tune the classification results for better precision and recall, due to the black box nature of learning. This study proposes a novel regular expression-based text classification method making use of genetic programming (GP) approaches to evolve regular expressions that can classify a given medical text inquiry with satisfactory precision and recall while allow human to read the classifier and fine-tune accordingly if necessary. Given a seed population of regular expressions (can be randomly initialized or manually constructed by experts), our method evolves a population of regular expressions according to chosen fitness function, using a novel regular expression syntax and a series of carefully chosen reproduction operators. Our method is evaluated with real-life medical text inquiries from an online healthcare provider and shows promising performance. More importantly, our method generates classifiers that can be fully understood, checked and updated by medical doctors, which are fundamentally crucial for medical related practices.
Traditionally linguists have organized languages of the world as language families modelled as trees. In this work we take a contrarian approach and question the tree-based model that is rather restrictive. For example, the affinity that Sanskrit independently has with languages across Indo-European languages is better illustrated using a network model. We can say the same about inter-relationship between languages in India, where the inter-relationships are better discovered than assumed. To enable such a discovery, in this paper we have made use of instance-based learning techniques to assign language labels to words. We vocalize each word and then classify it by making use of our custom linguistic distance metric of the word relative to training sets containing language labels. We construct the training sets by making use of word clusters and assigning a language and category label to that cluster. Further, we make use of clustering coefficients as a quality metric for our research. We believe our work has the potential to usher in a new era in linguistics. We have limited this work for important languages in India. This work can be further strengthened by applying Adaboost for classification coupled with structural equivalence concepts of social network analysis.