Intelligent medical image segmentation methods are rapidly evolving and being increasingly applied, yet they face the challenge of domain transfer, where algorithm performance degrades due to different data distributions between source and target domains. To address this, we introduce a method for zero-shot, single-prompt segmentation of 3D knee MRI by adapting Segment Anything Model 2 (SAM2), a general-purpose segmentation model designed to accept prompts and retain memory across frames of a video. By treating slices from 3D medical volumes as individual video frames, we leverage SAM2's advanced capabilities to generate motion- and spatially-aware predictions. We demonstrate that SAM2 can efficiently perform segmentation tasks in a zero-shot manner with no additional training or fine-tuning, accurately delineating structures in knee MRI scans using only a single prompt. Our experiments on the Osteoarthritis Initiative Zuse Institute Berlin (OAI-ZIB) dataset reveal that SAM2 achieves high accuracy on 3D knee bone segmentation, with a testing Dice similarity coefficient of 0.9643 on tibia. We also present results generated using different SAM2 model sizes, different prompt schemes, as well as comparative results from the SAM1 model deployed on the same dataset. This breakthrough has the potential to revolutionize medical image analysis by providing a scalable, cost-effective solution for automated segmentation, paving the way for broader clinical applications and streamlined workflows.
The recent Segment Anything Model (SAM) 2 has demonstrated remarkable foundational competence in semantic segmentation, with its memory mechanism and mask decoder further addressing challenges in video tracking and object occlusion, thereby achieving superior results in interactive segmentation for both images and videos. Building upon our previous empirical studies, we further explore the zero-shot segmentation performance of SAM 2 in robot-assisted surgery based on prompts, alongside its robustness against real-world corruption. For static images, we employ two forms of prompts: 1-point and bounding box, while for video sequences, the 1-point prompt is applied to the initial frame. Through extensive experimentation on the MICCAI EndoVis 2017 and EndoVis 2018 benchmarks, SAM 2, when utilizing bounding box prompts, outperforms state-of-the-art (SOTA) methods in comparative evaluations. The results with point prompts also exhibit a substantial enhancement over SAM's capabilities, nearing or even surpassing existing unprompted SOTA methodologies. Besides, SAM 2 demonstrates improved inference speed and less performance degradation against various image corruption. Although slightly unsatisfactory results remain in specific edges or regions, SAM 2's robust adaptability to 1-point prompts underscores its potential for downstream surgical tasks with limited prompt requirements.
Identifying the regions of a learning resource that a learner pays attention to is crucial for assessing the material's impact and improving its design and related support systems. Saliency detection in videos addresses the automatic recognition of attention-drawing regions in single frames. In educational settings, the recognition of pertinent regions in a video's visual stream can enhance content accessibility and information retrieval tasks such as video segmentation, navigation, and summarization. Such advancements can pave the way for the development of advanced AI-assisted technologies that support learning with greater efficacy. However, this task becomes particularly challenging for educational videos due to the combination of unique characteristics such as text, voice, illustrations, animations, and more. To the best of our knowledge, there is currently no study that evaluates saliency detection approaches in educational videos. In this paper, we address this gap by evaluating four state-of-the-art saliency detection approaches for educational videos. We reproduce the original studies and explore the replication capabilities for general-purpose (non-educational) datasets. Then, we investigate the generalization capabilities of the models and evaluate their performance on educational videos. We conduct a comprehensive analysis to identify common failure scenarios and possible areas of improvement. Our experimental results show that educational videos remain a challenging context for generic video saliency detection models.
The Segment Anything Model (SAM) has demonstrated impressive performance in zero-shot promptable segmentation on natural images. The recently released Segment Anything Model 2 (SAM 2) claims to outperform SAM on images and extends the model's capabilities to video segmentation. Evaluating the performance of this new model in medical image segmentation, specifically in a zero-shot promptable manner, is crucial. In this work, we conducted extensive studies using multiple datasets from various imaging modalities to compare the performance of SAM and SAM 2. We employed two point-prompt strategies: (i) multiple positive prompts where one prompt is placed near the centroid of the target structure, while the remaining prompts are randomly placed within the structure, and (ii) combined positive and negative prompts where one positive prompt is placed near the centroid of the target structure, and two negative prompts are positioned outside the structure, maximizing the distance from the positive prompt and from each other. The evaluation encompassed 24 unique organ-modality combinations, including abdominal structures, cardiac structures, fetal head images, skin lesions and polyp images across 11 publicly available MRI, CT, ultrasound, dermoscopy, and endoscopy datasets. Preliminary results based on 2D images indicate that while SAM 2 may perform slightly better in a few cases, it does not generally surpass SAM for medical image segmentation. Notably, SAM 2 performs worse than SAM in lower contrast imaging modalities, such as CT and ultrasound. However, for MRI images, SAM 2 performs on par with or better than SAM. Like SAM, SAM 2 also suffers from over-segmentation issues, particularly when the boundaries of the target organ are fuzzy.
Recent advances in segmentation foundation models have enabled accurate and efficient segmentation across a wide range of natural images and videos, but their utility to medical data remains unclear. In this work, we first present a comprehensive benchmarking of the Segment Anything Model 2 (SAM2) across 11 medical image modalities and videos and point out its strengths and weaknesses by comparing it to SAM1 and MedSAM. Then, we develop a transfer learning pipeline and demonstrate SAM2 can be quickly adapted to medical domain by fine-tuning. Furthermore, we implement SAM2 as a 3D slicer plugin and Gradio API for efficient 3D image and video segmentation. The code has been made publicly available at \url{https://github.com/bowang-lab/MedSAM}.
Medical image segmentation and video object segmentation are essential for diagnosing and analyzing diseases by identifying and measuring biological structures. Recent advances in natural domain have been driven by foundation models like the Segment Anything Model 2 (SAM-2). To explore the performance of SAM-2 in biomedical applications, we designed three evaluation pipelines for single-frame 2D image segmentation, multi-frame 3D image segmentation and multi-frame video segmentation with varied prompt designs, revealing SAM-2's limitations in medical contexts. Consequently, we developed BioSAM-2, an enhanced foundation model optimized for biomedical data based on SAM-2. Our experiments show that BioSAM-2 not only surpasses the performance of existing state-of-the-art foundation models but also matches or even exceeds specialist models, demonstrating its efficacy and potential in the medical domain.
The Segment Anything Model 2 (SAM 2) is the latest generation foundation model for image and video segmentation. Trained on the expansive Segment Anything Video (SA-V) dataset, which comprises 35.5 million masks across 50.9K videos, SAM 2 advances its predecessor's capabilities by supporting zero-shot segmentation through various prompts (e.g., points, boxes, and masks). Its robust zero-shot performance and efficient memory usage make SAM 2 particularly appealing for surgical tool segmentation in videos, especially given the scarcity of labeled data and the diversity of surgical procedures. In this study, we evaluate the zero-shot video segmentation performance of the SAM 2 model across different types of surgeries, including endoscopy and microscopy. We also assess its performance on videos featuring single and multiple tools of varying lengths to demonstrate SAM 2's applicability and effectiveness in the surgical domain. We found that: 1) SAM 2 demonstrates a strong capability for segmenting various surgical videos; 2) When new tools enter the scene, additional prompts are necessary to maintain segmentation accuracy; and 3) Specific challenges inherent to surgical videos can impact the robustness of SAM 2.
We present Segment Anything Model 2 (SAM 2), a foundation model towards solving promptable visual segmentation in images and videos. We build a data engine, which improves model and data via user interaction, to collect the largest video segmentation dataset to date. Our model is a simple transformer architecture with streaming memory for real-time video processing. SAM 2 trained on our data provides strong performance across a wide range of tasks. In video segmentation, we observe better accuracy, using 3x fewer interactions than prior approaches. In image segmentation, our model is more accurate and 6x faster than the Segment Anything Model (SAM). We believe that our data, model, and insights will serve as a significant milestone for video segmentation and related perception tasks. We are releasing our main model, dataset, as well as code for model training and our demo.
Although video perception models have made remarkable advancements in recent years, they still heavily rely on explicit text descriptions or pre-defined categories to identify target instances before executing video perception tasks. These models, however, fail to proactively comprehend and reason the user's intentions via textual input. Even though previous works attempt to investigate solutions to incorporate reasoning with image segmentation, they fail to reason with videos due to the video's complexity in object motion. To bridge the gap between image and video, in this work, we propose a new video segmentation task - video reasoning segmentation. The task is designed to output tracklets of segmentation masks given a complex input text query. What's more, to promote research in this unexplored area, we construct a reasoning video segmentation benchmark. Finally, we present ViLLa: Video reasoning segmentation with a Large Language Model, which incorporates the language generation capabilities of multimodal Large Language Models (LLMs) while retaining the capabilities of detecting, segmenting, and tracking multiple instances. We use a temporal-aware context aggregation module to incorporate contextual visual cues to text embeddings and propose a video-frame decoder to build temporal correlations across segmentation tokens. Remarkably, our ViLLa demonstrates capability in handling complex reasoning and referring video segmentation. Also, our model shows impressive ability in different temporal understanding benchmarks. Both quantitative and qualitative experiments show our method effectively unlocks new video reasoning segmentation capabilities for multimodal LLMs. The code and dataset will be available at https://github.com/rkzheng99/ViLLa.
Food segmentation, including in videos, is vital for addressing real-world health, agriculture, and food biotechnology issues. Current limitations lead to inaccurate nutritional analysis, inefficient crop management, and suboptimal food processing, impacting food security and public health. Improving segmentation techniques can enhance dietary assessments, agricultural productivity, and the food production process. This study introduces the development of a robust framework for high-quality, near-real-time segmentation and tracking of food items in videos, using minimal hardware resources. We present FoodMem, a novel framework designed to segment food items from video sequences of 360-degree unbounded scenes. FoodMem can consistently generate masks of food portions in a video sequence, overcoming the limitations of existing semantic segmentation models, such as flickering and prohibitive inference speeds in video processing contexts. To address these issues, FoodMem leverages a two-phase solution: a transformer segmentation phase to create initial segmentation masks and a memory-based tracking phase to monitor food masks in complex scenes. Our framework outperforms current state-of-the-art food segmentation models, yielding superior performance across various conditions, such as camera angles, lighting, reflections, scene complexity, and food diversity. This results in reduced segmentation noise, elimination of artifacts, and completion of missing segments. Here, we also introduce a new annotated food dataset encompassing challenging scenarios absent in previous benchmarks. Extensive experiments conducted on Nutrition5k and Vegetables & Fruits datasets demonstrate that FoodMem enhances the state-of-the-art by 2.5% mean average precision in food video segmentation and is 58 x faster on average.
Existing Video Object Segmentation (VOS) relies on explicit user instructions, such as categories, masks, or short phrases, restricting their ability to perform complex video segmentation requiring reasoning with world knowledge. In this paper, we introduce a new task, Reasoning Video Object Segmentation (ReasonVOS). This task aims to generate a sequence of segmentation masks in response to implicit text queries that require complex reasoning abilities based on world knowledge and video contexts, which is crucial for structured environment understanding and object-centric interactions, pivotal in the development of embodied AI. To tackle ReasonVOS, we introduce VISA (Video-based large language Instructed Segmentation Assistant), to leverage the world knowledge reasoning capabilities of multi-modal LLMs while possessing the ability to segment and track objects in videos with a mask decoder. Moreover, we establish a comprehensive benchmark consisting of 35,074 instruction-mask sequence pairs from 1,042 diverse videos, which incorporates complex world knowledge reasoning into segmentation tasks for instruction-tuning and evaluation purposes of ReasonVOS models. Experiments conducted on 8 datasets demonstrate the effectiveness of VISA in tackling complex reasoning segmentation and vanilla referring segmentation in both video and image domains. The code and dataset are available at https://github.com/cilinyan/VISA.
We present GvSeg, a general video segmentation framework for addressing four different video segmentation tasks (i.e., instance, semantic, panoptic, and exemplar-guided) while maintaining an identical architectural design. Currently, there is a trend towards developing general video segmentation solutions that can be applied across multiple tasks. This streamlines research endeavors and simplifies deployment. However, such a highly homogenized framework in current design, where each element maintains uniformity, could overlook the inherent diversity among different tasks and lead to suboptimal performance. To tackle this, GvSeg: i) provides a holistic disentanglement and modeling for segment targets, thoroughly examining them from the perspective of appearance, position, and shape, and on this basis, ii) reformulates the query initialization, matching and sampling strategies in alignment with the task-specific requirement. These architecture-agnostic innovations empower GvSeg to effectively address each unique task by accommodating the specific properties that characterize them. Extensive experiments on seven gold-standard benchmark datasets demonstrate that GvSeg surpasses all existing specialized/general solutions by a significant margin on four different video segmentation tasks.
In many real-world scenarios, recorded videos suffer from accidental focus blur, and while video deblurring methods exist, most specifically target motion blur. This paper introduces a framework optimised for the joint task of focal deblurring (refocusing) and video super-resolution (VSR). The proposed method employs novel map guided transformers, in addition to image propagation, to effectively leverage the continuous spatial variance of focal blur and restore the footage. We also introduce a flow re-focusing module to efficiently align relevant features between the blurry and sharp domains. Additionally, we propose a novel technique for generating synthetic focal blur data, broadening the model's learning capabilities to include a wider array of content. We have made a new benchmark dataset, DAVIS-Blur, available. This dataset, a modified extension of the popular DAVIS video segmentation set, provides realistic out-of-focus blur degradations as well as the corresponding blur maps. Comprehensive experiments on DAVIS-Blur demonstrate the superiority of our approach. We achieve state-of-the-art results with an average PSNR performance over 1.9dB greater than comparable existing video restoration methods. Our source code will be made available at https://github.com/crispianm/DaBiT
Snapshot compressive imaging (SCI) captures high-dimensional data efficiently by compressing it into two-dimensional observations and reconstructing high-dimensional data from two-dimensional observations with various algorithms. The plug-and-play (PnP) method is a promising approach for the video SCI reconstruction because it can leverage both observation models and denoising methods for videos. Since the reconstruction accuracy significantly depends on the choice of noise level parameters, this paper proposes a deep unfolding-based method for tuning these parameters in PnP-based video SCI. For the training of the parameters, we prepare training data from the densely annotated video segmentation dataset, reparametrize the noise level parameters, and apply the checkpointing technique to reduce the required memory. Simulation results show that the trained noise level parameters via the proposed approach exhibit a non-monotonic pattern, which is different from the assumptions in the conventional convergence analyses of PnP-based algorithms. These findings provide new insights into both the application of deep unfolding and the theoretical basis of PnP algorithms.
In the context of escalating safety concerns across various domains, the tasks of Video Anomaly Detection (VAD) and Video Anomaly Recognition (VAR) have emerged as critically important for applications in intelligent surveillance, evidence investigation, violence alerting, etc. These tasks, aimed at identifying and classifying deviations from normal behavior in video data, face significant challenges due to the rarity of anomalies which leads to extremely imbalanced data and the impracticality of extensive frame-level data annotation for supervised learning. This paper introduces a novel hierarchical graph neural network (GNN) based model MissionGNN that addresses these challenges by leveraging a state-of-the-art large language model and a comprehensive knowledge graph for efficient weakly supervised learning in VAR. Our approach circumvents the limitations of previous methods by avoiding heavy gradient computations on large multimodal models and enabling fully frame-level training without fixed video segmentation. Utilizing automated, mission-specific knowledge graph generation, our model provides a practical and efficient solution for real-time video analysis without the constraints of previous segmentation-based or multimodal approaches. Experimental validation on benchmark datasets demonstrates our model's performance in VAD and VAR, highlighting its potential to redefine the landscape of anomaly detection and recognition in video surveillance systems.
Pixel-level Video Understanding in the Wild Challenge (PVUW) focus on complex video understanding. In this CVPR 2024 workshop, we add two new tracks, Complex Video Object Segmentation Track based on MOSE dataset and Motion Expression guided Video Segmentation track based on MeViS dataset. In the two new tracks, we provide additional videos and annotations that feature challenging elements, such as the disappearance and reappearance of objects, inconspicuous small objects, heavy occlusions, and crowded environments in MOSE. Moreover, we provide a new motion expression guided video segmentation dataset MeViS to study the natural language-guided video understanding in complex environments. These new videos, sentences, and annotations enable us to foster the development of a more comprehensive and robust pixel-level understanding of video scenes in complex environments and realistic scenarios. The MOSE challenge had 140 registered teams in total, 65 teams participated the validation phase and 12 teams made valid submissions in the final challenge phase. The MeViS challenge had 225 registered teams in total, 50 teams participated the validation phase and 5 teams made valid submissions in the final challenge phase.
Accurate modeling of the vocal tract is necessary to construct articulatory representations for interpretable speech processing and linguistics. However, vocal tract modeling is challenging because many internal articulators are occluded from external motion capture technologies. Real-time magnetic resonance imaging (RT-MRI) allows measuring precise movements of internal articulators during speech, but annotated datasets of MRI are limited in size due to time-consuming and computationally expensive labeling methods. We first present a deep labeling strategy for the RT-MRI video using a vision-only segmentation approach. We then introduce a multimodal algorithm using audio to improve segmentation of vocal articulators. Together, we set a new benchmark for vocal tract modeling in MRI video segmentation and use this to release labels for a 75-speaker RT-MRI dataset, increasing the amount of labeled public RT-MRI data of the vocal tract by over a factor of 9. The code and dataset labels can be found at \url{rishiraij.github.io/multimodal-mri-avatar/}.
Colonoscopy videos provide richer information in polyp segmentation for rectal cancer diagnosis. However, the endoscope's fast moving and close-up observing make the current methods suffer from large spatial incoherence and continuous low-quality frames, and thus yield limited segmentation accuracy. In this context, we focus on robust video polyp segmentation by enhancing the adjacent feature consistency and rebuilding the reliable polyp representation. To achieve this goal, we in this paper propose SALI network, a hybrid of Short-term Alignment Module (SAM) and Long-term Interaction Module (LIM). The SAM learns spatial-aligned features of adjacent frames via deformable convolution and further harmonizes them to capture more stable short-term polyp representation. In case of low-quality frames, the LIM stores the historical polyp representations as a long-term memory bank, and explores the retrospective relations to interactively rebuild more reliable polyp features for the current segmentation. Combing SAM and LIM, the SALI network of video segmentation shows a great robustness to the spatial variations and low-visual cues. Benchmark on the large-scale SUNSEG verifies the superiority of SALI over the current state-of-the-arts by improving Dice by 2.1%, 2.5%, 4.1% and 1.9%, for the four test sub-sets, respectively. Codes are at https://github.com/Scatteredrain/SALI.
Motion Expression guided Video Segmentation is a challenging task that aims at segmenting objects in the video based on natural language expressions with motion descriptions. Unlike the previous referring video object segmentation (RVOS), this task focuses more on the motion in video content for language-guided video object segmentation, requiring an enhanced ability to model longer temporal, motion-oriented vision-language data. In this report, based on the RVOS methods, we successfully introduce mask information obtained from the video instance segmentation model as preliminary information for temporal enhancement and employ SAM for spatial refinement. Finally, our method achieved a score of 49.92 J &F in the validation phase and 54.20 J &F in the test phase, securing the final ranking of 2nd in the MeViS Track at the CVPR 2024 PVUW Challenge.
Motion Expression guided Video Segmentation (MeViS), as an emerging task, poses many new challenges to the field of referring video object segmentation (RVOS). In this technical report, we investigated and validated the effectiveness of static-dominant data and frame sampling on this challenging setting. Our solution achieves a J&F score of 0.5447 in the competition phase and ranks 1st in the MeViS track of the PVUW Challenge. The code is available at: https://github.com/Tapall-AI/MeViS_Track_Solution_2024.