Monitoring the spread of disease-carrying mosquitoes is a first and necessary step to control severe diseases such as dengue, chikungunya, Zika or yellow fever. Previous citizen science projects have been able to obtain large image datasets with linked geo-tracking information. As the number of international collaborators grows, the manual annotation by expert entomologists of the large amount of data gathered by these users becomes too time demanding and unscalable, posing a strong need for automated classification of mosquito species from images. We introduce the application of two Deep Convolutional Neural Networks in a comparative study to automate this classification task. We use the transfer learning principle to train two state-of-the-art architectures on the data provided by the Mosquito Alert project, obtaining testing accuracy of 94%. In addition, we applied explainable models based on the Grad-CAM algorithm to visualise the most discriminant regions of the classified images, which coincide with the white band stripes located at the legs, abdomen, and thorax of mosquitoes of the Aedes albopictus species. The model allows us to further analyse the classification errors. Visual Grad-CAM models show that they are linked to poor acquisition conditions and strong image occlusions.
With the prevalence of deep learning based embedding approaches, recommender systems have become a proven and indispensable tool in various information filtering applications. However, many of them remain difficult to diagnose what aspects of the deep models' input drive the final ranking decision, thus, they cannot often be understood by human stakeholders. In this paper, we investigate the dilemma between recommendation and explainability, and show that by utilizing the contextual features (e.g., item reviews from users), we can design a series of explainable recommender systems without sacrificing their performance. In particular, we propose three types of explainable recommendation strategies with gradual change of model transparency: whitebox, graybox, and blackbox. Each strategy explains its ranking decisions via different mechanisms: attention weights, adversarial perturbations, and counterfactual perturbations. We apply these explainable models on five real-world data sets under the contextualized setting where users and items have explicit interactions. The empirical results show that our model achieves highly competitive ranking performance, and generates accurate and effective explanations in terms of numerous quantitative metrics and qualitative visualizations.
Integrating the special electromagnetic characteristics of Synthetic Aperture Radar (SAR) in deep neural networks is essential in order to enhance the explainability and physics awareness of deep learning. In this paper, we first propose a novel physically explainable convolutional neural network for SAR image classification, namely physics guided and injected learning (PGIL). It comprises three parts: (1) explainable models (XM) to provide prior physics knowledge, (2) physics guided network (PGN) to encode the knowledge into physics-aware features, and (3) physics injected network (PIN) to adaptively introduce the physics-aware features into classification pipeline for label prediction. A hybrid Image-Physics SAR dataset format is proposed for evaluation, with both Sentinel-1 and Gaofen-3 SAR data being experimented. The results show that the proposed PGIL substantially improve the classification performance in case of limited labeled data compared with the counterpart data-driven CNN and other pre-training methods. Additionally, the physics explanations are discussed to indicate the interpretability and the physical consistency preserved in the predictions. We deem the proposed method would promote the development of physically explainable deep learning in SAR image interpretation field.
Fact-checking on the Web has become the main mechanism through which we detect the credibility of the news or information. Existing fact-checkers verify the authenticity of the information (support or refute the claim) based on secondary sources of information. However, existing approaches do not consider the problem of model updates due to constantly increasing training data due to user feedback. It is therefore important to conduct user studies to correct models' inference biases and improve the model in a life-long learning manner in the future according to the user feedback. In this paper, we present FaxPlainAC, a tool that gathers user feedback on the output of explainable fact-checking models. FaxPlainAC outputs both the model decision, i.e., whether the input fact is true or not, along with the supporting/refuting evidence considered by the model. Additionally, FaxPlainAC allows for accepting user feedback both on the prediction and explanation. Developed in Python, FaxPlainAC is designed as a modular and easily deployable tool. It can be integrated with other downstream tasks and allowing for fact-checking human annotation gathering and life-long learning.
Implicit knowledge, such as common sense, is key to fluid human conversations. Current neural response generation (RG) models are trained to generate responses directly, omitting unstated implicit knowledge. In this paper, we present Think-Before-Speaking (TBS), a generative approach to first externalize implicit commonsense knowledge (think) and use this knowledge to generate responses (speak). We expect that externalizing implicit knowledge allows more efficient learning, produces more informative responses, and enables more explainable models. We analyze different choices to collect knowledge-aligned dialogues, represent implicit knowledge, and transition between knowledge and dialogues. Empirical results show TBS models outperform end-to-end and knowledge-augmented RG baselines on most automatic metrics and generate more informative, specific, and commonsense-following responses, as evaluated by human annotators. TBS also generates knowledge that makes sense and is relevant to the dialogue around 85\% of the time.
Complex deep learning models show high prediction tasks in various clinical prediction tasks but their inherent complexity makes it more challenging to explain model predictions for clinicians and healthcare providers. Existing research on explainability of deep learning models in healthcare have two major limitations: using post-hoc explanations and using raw clinical variables as units of explanation, both of which are often difficult for human interpretation. In this work, we designed a self-explaining deep learning framework using the expert-knowledge driven clinical concepts or intermediate features as units of explanation. The self-explaining nature of our proposed model comes from generating both explanations and predictions within the same architectural framework via joint training. We tested our proposed approach on a publicly available Electronic Health Records (EHR) dataset for predicting patient mortality in the ICU. In order to analyze the performance-interpretability trade-off, we compared our proposed model with a baseline having the same set-up but without the explanation components. Experimental results suggest that adding explainability components to a deep learning framework does not impact prediction performance and the explanations generated by the model can provide insights to the clinicians to understand the possible reasons behind patient mortality.
Post-hoc explanation methods, e.g., Grad-CAM, enable humans to inspect the spatial regions responsible for a particular network decision. However, it is shown that such explanations are not always consistent with human priors, such as consistency across image transformations. Given an interpretation algorithm, e.g., Grad-CAM, we introduce a novel training method to train the model to produce more consistent explanations. Since obtaining the ground truth for a desired model interpretation is not a well-defined task, we adopt ideas from contrastive self-supervised learning, and apply them to the interpretations of the model rather than its embeddings. We show that our method, Contrastive Grad-CAM Consistency (CGC), results in Grad-CAM interpretation heatmaps that are more consistent with human annotations while still achieving comparable classification accuracy. Moreover, our method acts as a regularizer and improves the accuracy on limited-data, fine-grained classification settings. In addition, because our method does not rely on annotations, it allows for the incorporation of unlabeled data into training, which enables better generalization of the model. Our code is available here: https://github.com/UCDvision/CGC
The COVID-19 corona virus has claimed 4.1 million lives, as of July 24, 2021. A variety of machine learning models have been applied to related data to predict important factors such as the severity of the disease, infection rate and discover important prognostic factors. Often the usefulness of the findings from the use of these techniques is reduced due to lack of method interpretability. Some recent progress made on the interpretability of machine learning models has the potential to unravel more insights while using conventional machine learning models. In this work, we analyze COVID-19 blood work data with some of the popular machine learning models; then we employ state-of-the-art post-hoc local interpretability techniques(e.g.- SHAP, LIME), and global interpretability techniques(e.g. - symbolic metamodeling) to the trained black-box models to draw interpretable conclusions. In the gamut of machine learning algorithms, regressions remain one of the simplest and most explainable models with clear mathematical formulation. We explore one of the most recent techniques called symbolic metamodeling to find the mathematical expression of the machine learning models for COVID-19. We identify Acute Kidney Injury (AKI), initial Albumin level (ALBI), Aspartate aminotransferase (ASTI), Total Bilirubin initial(TBILI) and D-Dimer initial (DIMER) as major prognostic factors of the disease severity. Our contributions are- (i) uncover the underlying mathematical expression for the black-box models on COVID-19 severity prediction task (ii) we are the first to apply symbolic metamodeling to this task, and (iii) discover important features and feature interactions.
Deep neural networks have shown their profound impact on achieving human level performance in visual saliency prediction. However, it is still unclear how they learn the task and what it means in terms of understanding human visual system. In this work, we develop a technique to derive explainable saliency models from their corresponding deep neural architecture based saliency models by applying human perception theories and the conventional concepts of saliency. This technique helps us understand the learning pattern of the deep network at its intermediate layers through their activation maps. Initially, we consider two state-of-the-art deep saliency models, namely UNISAL and MSI-Net for our interpretation. We use a set of biologically plausible log-gabor filters for identifying and reconstructing the activation maps of them using our explainable saliency model. The final saliency map is generated using these reconstructed activation maps. We also build our own deep saliency model named cross-concatenated multi-scale residual block based network (CMRNet) for saliency prediction. Then, we evaluate and compare the performance of the explainable models derived from UNISAL, MSI-Net and CMRNet on three benchmark datasets with other state-of-the-art methods. Hence, we propose that this approach of explainability can be applied to any deep visual saliency model for interpretation which makes it a generic one.
Self-explaining deep models are designed to learn the latent concept-based explanations implicitly during training, which eliminates the requirement of any post-hoc explanation generation technique. In this work, we propose one such model that appends an explanation generation module on top of any basic network and jointly trains the whole module that shows high predictive performance and generates meaningful explanations in terms of concepts. Our training strategy is suitable for unsupervised concept learning with much lesser parameter space requirements compared to baseline methods. Our proposed model also has provision for leveraging self-supervision on concepts to extract better explanations. However, with full concept supervision, we achieve the best predictive performance compared to recently proposed concept-based explainable models. We report both qualitative and quantitative results with our method, which shows better performance than recently proposed concept-based explainability methods. We reported exhaustive results with two datasets without ground truth concepts, i.e., CIFAR10, ImageNet, and two datasets with ground truth concepts, i.e., AwA2, CUB-200, to show the effectiveness of our method for both cases. To the best of our knowledge, we are the first ante-hoc explanation generation method to show results with a large-scale dataset such as ImageNet.
Biomechanical modeling of tissue deformation can be used to simulate different scenarios of longitudinal brain evolution. In this work,we present a deep learning framework for hyper-elastic strain modelling of brain atrophy, during healthy ageing and in Alzheimer's Disease. The framework directly models the effects of age, disease status, and scan interval to regress regional patterns of atrophy, from which a strain-based model estimates deformations. This model is trained and validated using 3D structural magnetic resonance imaging data from the ADNI cohort. Results show that the framework can estimate realistic deformations, following the known course of Alzheimer's disease, that clearly differentiate between healthy and demented patterns of ageing. This suggests the framework has potential to be incorporated into explainable models of disease, for the exploration of interventions and counterfactual examples.
Deep neural network (DNN) models have achieved phenomenal success for applications in many domains, ranging from academic research in science and engineering to industry and business. The modeling power of DNN is believed to have come from the complexity and over-parameterization of the model, which on the other hand has been criticized for the lack of interpretation. Although certainly not true for every application, in some applications, especially in economics, social science, healthcare industry, and administrative decision making, scientists or practitioners are resistant to use predictions made by a black-box system for multiple reasons. One reason is that a major purpose of a study can be to make discoveries based upon the prediction function, e.g., to reveal the relationships between measurements. Another reason can be that the training dataset is not large enough to make researchers feel completely sure about a purely data-driven result. Being able to examine and interpret the prediction function will enable researchers to connect the result with existing knowledge or gain insights about new directions to explore. Although classic statistical models are much more explainable, their accuracy often falls considerably below DNN. In this paper, we propose an approach to fill the gap between relatively simple explainable models and DNN such that we can more flexibly tune the trade-off between interpretability and accuracy. Our main idea is a mixture of discriminative models that is trained with the guidance from a DNN. Although mixtures of discriminative models have been studied before, our way of generating the mixture is quite different.
Reliable deployment of machine learning models such as neural networks continues to be challenging due to several limitations. Some of the main shortcomings are the lack of interpretability and the lack of robustness against adversarial examples or out-of-distribution inputs. In this exploratory review, we explore the possibilities and limits of adversarial attacks for explainable machine learning models. First, we extend the notion of adversarial examples to fit in explainable machine learning scenarios, in which the inputs, the output classifications and the explanations of the model's decisions are assessed by humans. Next, we propose a comprehensive framework to study whether (and how) adversarial examples can be generated for explainable models under human assessment, introducing and illustrating novel attack paradigms. In particular, our framework considers a wide range of relevant yet often ignored factors such as the type of problem, the user expertise or the objective of the explanations, in order to identify the attack strategies that should be adopted in each scenario to successfully deceive the model (and the human). The intention of these contributions is to serve as a basis for a more rigorous and realistic study of adversarial examples in the field of explainable machine learning.
The results showed that XAI could indeed be used as a proof of concept to begin discussions on the implementation of assistive AI systems within the clinical community.
The versatility of recent machine learning approaches makes them ideal for improvement of next generation video compression solutions. Unfortunately, these approaches typically bring significant increases in computational complexity and are difficult to interpret into explainable models, affecting their potential for implementation within practical video coding applications. This paper introduces a novel explainable neural network-based inter-prediction scheme, to improve the interpolation of reference samples needed for fractional precision motion compensation. The approach requires a single neural network to be trained from which a full quarter-pixel interpolation filter set is derived, as the network is easily interpretable due to its linear structure. A novel training framework enables each network branch to resemble a specific fractional shift. This practical solution makes it very efficient to use alongside conventional video coding schemes. When implemented in the context of the state-of-the-art Versatile Video Coding (VVC) test model, 0.77%, 1.27% and 2.25% BD-rate savings can be achieved on average for lower resolution sequences under the random access, low-delay B and low-delay P configurations, respectively, while the complexity of the learned interpolation schemes is significantly reduced compared to the interpolation with full CNNs.
Causal reasoning is the main learning and explanation tool used by humans. AI systems should possess causal reasoning capabilities to be deployed in the real world with trust and reliability. Introducing the ideas of causality to machine learning helps in providing better learning and explainable models. Explainability, causal disentanglement are some important aspects of any machine learning model. Causal explanations are required to believe in a model's decision and causal disentanglement learning is important for transfer learning applications. We exploit the ideas of causality to be used in deep learning models to achieve better and causally explainable models that are useful in fairness, disentangled representation, etc.
Discovering dynamical models to describe underlying dynamical behavior is essential to draw decisive conclusions and engineering studies, e.g., optimizing a process. Experimental data availability notwithstanding has increased significantly, but interpretable and explainable models in science and engineering yet remain incomprehensible. In this work, we blend machine learning and dictionary-based learning with numerical analysis tools to discover governing differential equations from noisy and sparsely-sampled measurement data. We utilize the fact that given a dictionary containing huge candidate nonlinear functions, dynamical models can often be described by a few appropriately chosen candidates. As a result, we obtain interpretable and parsimonious models which are prone to generalize better beyond the sampling regime. Additionally, we integrate a numerical integration framework with dictionary learning that yields differential equations without requiring or approximating derivative information at any stage. Hence, it is utterly effective in corrupted and sparsely-sampled data. We discuss its extension to governing equations, containing rational nonlinearities that typically appear in biological networks. Moreover, we generalized the method to governing equations that are subject to parameter variations and externally controlled inputs. We demonstrate the efficiency of the method to discover a number of diverse differential equations using noisy measurements, including a model describing neural dynamics, chaotic Lorenz model, Michaelis-Menten Kinetics, and a parameterized Hopf normal form.
Explainable machine learning has become increasingly prevalent, especially in healthcare where explainable models are vital for ethical and trusted automated decision making. Work on the susceptibility of deep learning models to adversarial attacks has shown the ease of designing samples to mislead a model into making incorrect predictions. In this work, we propose a model agnostic explainability-based method for the accurate detection of adversarial samples on two datasets with different complexity and properties: Electronic Health Record (EHR) and chest X-ray (CXR) data. On the MIMIC-III and Henan-Renmin EHR datasets, we report a detection accuracy of 77% against the Longitudinal Adversarial Attack. On the MIMIC-CXR dataset, we achieve an accuracy of 88%; significantly improving on the state of the art of adversarial detection in both datasets by over 10% in all settings. We propose an anomaly detection based method using explainability techniques to detect adversarial samples which is able to generalise to different attack methods without a need for retraining.
Recently, research on explainable recommender systems has drawn much attention from both academia and industry, resulting in a variety of explainable models. As a consequence, their evaluation approaches vary from model to model, which makes it quite difficult to compare the explainability of different models. To achieve a standard way of evaluating recommendation explanations, we provide three benchmark datasets for EXplanaTion RAnking (denoted as EXTRA), on which explainability can be measured by ranking-oriented metrics. Constructing such datasets, however, poses great challenges. First, user-item-explanation triplet interactions are rare in existing recommender systems, so how to find alternatives becomes a challenge. Our solution is to identify nearly identical sentences from user reviews. This idea then leads to the second challenge, i.e., how to efficiently categorize the sentences in a dataset into different groups, since it has quadratic runtime complexity to estimate the similarity between any two sentences. To mitigate this issue, we provide a more efficient method based on Locality Sensitive Hashing (LSH) that can detect near-duplicates in sub-linear time for a given query. Moreover, we make our code publicly available to allow researchers in the community to create their own datasets.
Deep learning models suffer from opaqueness. For Convolutional Neural Networks (CNNs), current research strategies for explaining models focus on the target classes within the associated training dataset. As a result, the understanding of hidden feature map activations is limited by the discriminative knowledge gleaned during training. The aim of our work is to explain and expand CNNs models via the mirroring or alignment of CNN to an external knowledge base. This will allow us to give a semantic context or label for each visual feature. We can match CNN feature activations to nodes in our external knowledge base. This supports knowledge-based interpretation of the features associated with model decisions. To demonstrate our approach, we build two separate graphs. We use an entity alignment method to align the feature nodes in a CNN with the nodes in a ConceptNet based knowledge graph. We then measure the proximity of CNN graph nodes to semantically meaningful knowledge base nodes. Our results show that in the aligned embedding space, nodes from the knowledge graph are close to the CNN feature nodes that have similar meanings, indicating that nodes from an external knowledge base can act as explanatory semantic references for features in the model. We analyse a variety of graph building methods in order to improve the results from our embedding space. We further demonstrate that by using hierarchical relationships from our external knowledge base, we can locate new unseen classes outside the CNN training set in our embeddings space, based on visual feature activations. This suggests that we can adapt our approach to identify unseen classes based on CNN feature activations. Our demonstrated approach of aligning a CNN with an external knowledge base paves the way to reason about and beyond the trained model, with future adaptations to explainable models and zero-shot learning.