Segmentation models are typically constrained by the categories defined during training. To address this, researchers have explored two independent approaches: adapting Vision-Language Models (VLMs) and leveraging synthetic data. However, VLMs often struggle with granularity, failing to disentangle fine-grained concepts, while synthetic data-based methods remain limited by the scope of available datasets. This paper proposes enhancing segmentation accuracy across diverse domains by integrating Vision-Language reasoning with key strategies for Unsupervised Domain Adaptation (UDA). First, we improve the fine-grained segmentation capabilities of VLMs through multi-scale contextual data, robust text embeddings with prompt augmentation, and layer-wise fine-tuning in our proposed Foundational-Retaining Open Vocabulary Semantic Segmentation (FROVSS) framework. Next, we incorporate these enhancements into a UDA framework by employing distillation to stabilize training and cross-domain mixed sampling to boost adaptability without compromising generalization. The resulting UDA-FROVSS framework is the first UDA approach to effectively adapt across domains without requiring shared categories.
Semantic segmentation is a fundamental task in multimedia processing, which can be used for analyzing, understanding, editing contents of images and videos, among others. To accelerate the analysis of multimedia data, existing segmentation researches tend to extract semantic information by progressively reducing the spatial resolutions of feature maps. However, this approach introduces a misalignment problem when restoring the resolution of high-level feature maps. In this paper, we design a Semantic Refinement Module (SRM) to address this issue within the segmentation network. Specifically, SRM is designed to learn a transformation offset for each pixel in the upsampled feature maps, guided by high-resolution feature maps and neighboring offsets. By applying these offsets to the upsampled feature maps, SRM enhances the semantic representation of the segmentation network, particularly for pixels around object boundaries. Furthermore, a Contextual Refinement Module (CRM) is presented to capture global context information across both spatial and channel dimensions. To balance dimensions between channel and space, we aggregate the semantic maps from all four stages of the backbone to enrich channel context information. The efficacy of these proposed modules is validated on three widely used datasets-Cityscapes, Bdd100K, and ADE20K-demonstrating superior performance compared to state-of-the-art methods. Additionally, this paper extends these modules to a lightweight segmentation network, achieving an mIoU of 82.5% on the Cityscapes validation set with only 137.9 GFLOPs.
Open-vocabulary panoptic segmentation aims to segment and classify everything in diverse scenes across an unbounded vocabulary. Existing methods typically employ two-stage or single-stage framework. The two-stage framework involves cropping the image multiple times using masks generated by a mask generator, followed by feature extraction, while the single-stage framework relies on a heavyweight mask decoder to make up for the lack of spatial position information through self-attention and cross-attention in multiple stacked Transformer blocks. Both methods incur substantial computational overhead, thereby hindering the efficiency of model inference. To fill the gap in efficiency, we propose EOV-Seg, a novel single-stage, shared, efficient, and spatialaware framework designed for open-vocabulary panoptic segmentation. Specifically, EOV-Seg innovates in two aspects. First, a Vocabulary-Aware Selection (VAS) module is proposed to improve the semantic comprehension of visual aggregated features and alleviate the feature interaction burden on the mask decoder. Second, we introduce a Two-way Dynamic Embedding Experts (TDEE), which efficiently utilizes the spatial awareness capabilities of ViT-based CLIP backbone. To the best of our knowledge, EOV-Seg is the first open-vocabulary panoptic segmentation framework towards efficiency, which runs faster and achieves competitive performance compared with state-of-the-art methods. Specifically, with COCO training only, EOV-Seg achieves 24.5 PQ, 32.1 mIoU, and 11.6 FPS on the ADE20K dataset and the inference time of EOV-Seg is 4-19 times faster than state-of-theart methods. Especially, equipped with ResNet50 backbone, EOV-Seg runs 23.8 FPS with only 71M parameters on a single RTX 3090 GPU. Code is available at https://github.com/nhw649/EOV-Seg.
Medical image segmentation is a key task in the imaging workflow, influencing many image-based decisions. Traditional, fully-supervised segmentation models rely on large amounts of labeled training data, typically obtained through manual annotation, which can be an expensive, time-consuming, and error-prone process. This signals a need for accurate, automatic, and annotation-efficient methods of training these models. We propose SAM-Mix, a novel multitask learning framework for medical image segmentation that uses class activation maps produced by an auxiliary classifier to guide the predictions of the semi-supervised segmentation branch, which is based on the SAM framework. Experimental evaluations on the public LiTS dataset confirm the effectiveness of SAM-Mix for simultaneous classification and segmentation of the liver from abdominal computed tomography (CT) scans. When trained for 90% fewer epochs on only 50 labeled 2D slices, representing just 0.04% of the available labeled training data, SAM-Mix achieves a Dice improvement of 5.1% over the best baseline model. The generalization results for SAM-Mix are even more impressive, with the same model configuration yielding a 25.4% Dice improvement on a cross-domain segmentation task. Our code is available at https://github.com/tbwa233/SAM-Mix.
Polyp segmentation in colonoscopy is crucial for detecting colorectal cancer. However, it is challenging due to variations in the structure, color, and size of polyps, as well as the lack of clear boundaries with surrounding tissues. Traditional segmentation models based on Convolutional Neural Networks (CNNs) struggle to capture detailed patterns and global context, limiting their performance. Vision Transformer (ViT)-based models address some of these issues but have difficulties in capturing local context and lack strong zero-shot generalization. To this end, we propose the Mamba-guided Segment Anything Model (SAM-Mamba) for efficient polyp segmentation. Our approach introduces a Mamba-Prior module in the encoder to bridge the gap between the general pre-trained representation of SAM and polyp-relevant trivial clues. It injects salient cues of polyp images into the SAM image encoder as a domain prior while capturing global dependencies at various scales, leading to more accurate segmentation results. Extensive experiments on five benchmark datasets show that SAM-Mamba outperforms traditional CNN, ViT, and Adapter-based models in both quantitative and qualitative measures. Additionally, SAM-Mamba demonstrates excellent adaptability to unseen datasets, making it highly suitable for real-time clinical use.
In medical imaging, precise annotation of lesions or organs is often required. However, 3D volumetric images typically consist of hundreds or thousands of slices, making the annotation process extremely time-consuming and laborious. Recently, the Segment Anything Model (SAM) has drawn widespread attention due to its remarkable zero-shot generalization capabilities in interactive segmentation. While researchers have explored adapting SAM for medical applications, such as using SAM adapters or constructing 3D SAM models, a key question remains: Can traditional CNN networks achieve the same strong zero-shot generalization in this task? In this paper, we propose the Lightweight Interactive Network for 3D Medical Image Segmentation (LIM-Net), a novel approach demonstrating the potential of compact CNN-based models. Built upon a 2D CNN backbone, LIM-Net initiates segmentation by generating a 2D prompt mask from user hints. This mask is then propagated through the 3D sequence via the Memory Module. To refine and stabilize results during interaction, the Multi-Round Result Fusion (MRF) Module selects and merges optimal masks from multiple rounds. Our extensive experiments across multiple datasets and modalities demonstrate LIM-Net's competitive performance. It exhibits stronger generalization to unseen data compared to SAM-based models, with competitive accuracy while requiring fewer interactions. Notably, LIM-Net's lightweight design offers significant advantages in deployment and inference efficiency, with low GPU memory consumption suitable for resource-constrained environments. These promising results demonstrate LIM-Net can serve as a strong baseline, complementing and contrasting with popular SAM models to further boost effective interactive medical image segmentation. The code will be released at \url{https://github.com/goodtime-123/LIM-Net}.
Accurate segmentation of brain tumors from 3D multimodal MRI is vital for diagnosis and treatment planning across diverse brain tumors. This paper addresses the challenges posed by the BraTS 2023, presenting a unified transfer learning approach that applies to a broader spectrum of brain tumors. We introduce HT-CNNs, an ensemble of Hybrid Transformers and Convolutional Neural Networks optimized through transfer learning for varied brain tumor segmentation. This method captures spatial and contextual details from MRI data, fine-tuned on diverse datasets representing common tumor types. Through transfer learning, HT-CNNs utilize the learned representations from one task to improve generalization in another, harnessing the power of pre-trained models on large datasets and fine-tuning them on specific tumor types. We preprocess diverse datasets from multiple international distributions, ensuring representativeness for the most common brain tumors. Our rigorous evaluation employs standardized quantitative metrics across all tumor types, ensuring robustness and generalizability. The proposed ensemble model achieves superior segmentation results across the BraTS validation datasets over the previous winning methods. Comprehensive quantitative evaluations using the DSC and HD95 demonstrate the effectiveness of our approach. Qualitative segmentation predictions further validate the high-quality outputs produced by our model. Our findings underscore the potential of transfer learning and ensemble approaches in medical image segmentation, indicating a substantial enhancement in clinical decision-making and patient care. Despite facing challenges related to post-processing and domain gaps, our study sets a new precedent for future research for brain tumor segmentation. The docker image for the code and models has been made publicly available, https://hub.docker.com/r/razeineldin/ht-cnns.
Oil spills in the ocean pose severe environmental risks, making early detection essential. Synthetic aperture radar (SAR) based oil spill segmentation offers robust monitoring under various conditions but faces challenges due to the limited labeled data and inherent speckle noise in SAR imagery. To address these issues, we propose (i) a diffusion-based Data Augmentation and Knowledge Distillation (DAKD) pipeline and (ii) a novel SAR oil spill segmentation network, called SAROSS-Net. In our DAKD pipeline, we present a diffusion-based SAR-JointNet that learns to generate realistic SAR images and their labels for segmentation, by effectively modeling joint distribution with balancing two modalities. The DAKD pipeline augments the training dataset and distills knowledge from SAR-JointNet by utilizing generated soft labels (pixel-wise probability maps) to supervise our SAROSS-Net. The SAROSS-Net is designed to selectively transfer high-frequency features from noisy SAR images, by employing novel Context-Aware Feature Transfer blocks along skip connections. We demonstrate our SAR-JointNet can generate realistic SAR images and well-aligned segmentation labels, providing the augmented data to train SAROSS-Net with enhanced generalizability. Our SAROSS-Net trained with the DAKD pipeline significantly outperforms existing SAR oil spill segmentation methods with large margins.
Neurogliomas are among the most aggressive forms of cancer, presenting considerable challenges in both treatment and monitoring due to their unpredictable biological behavior. Magnetic resonance imaging (MRI) is currently the preferred method for diagnosing and monitoring gliomas. However, the lack of specific imaging techniques often compromises the accuracy of tumor segmentation during the imaging process. To address this issue, we introduce the XLSTM-HVED model. This model integrates a hetero-modal encoder-decoder framework with the Vision XLSTM module to reconstruct missing MRI modalities. By deeply fusing spatial and temporal features, it enhances tumor segmentation performance. The key innovation of our approach is the Self-Attention Variational Encoder (SAVE) module, which improves the integration of modal features. Additionally, it optimizes the interaction of features between segmentation and reconstruction tasks through the Squeeze-Fusion-Excitation Cross Awareness (SFECA) module. Our experiments using the BraTS 2024 dataset demonstrate that our model significantly outperforms existing advanced methods in handling cases where modalities are missing. Our source code is available at https://github.com/Quanato607/XLSTM-HVED.
Automated segmentation of medical images highly depends on the availability of accurate manual image annotations. Such annotations are very time-consuming and costly to generate, and often require specialized expertise, particularly for cross-sectional images which contain many slices for each patient. It is crucial to ensure the best use of annotation resources. In this paper, we systematically answer the question of how to select slices of cross-sectional medical images in order to maximize performance of the resulting deep learning segmentation models. We conducted experiments on 4 medical imaging segmentation tasks with varying annotation budgets, numbers of annotated cases, numbers of annotated slices per volume, slice selection techniques, and mask interpolations. We found that: 1) It is almost always preferable to annotate fewer slices per volume and more volumes given an annotation budget. 2) Selecting slices for annotation by unsupervised active learning (UAL) is not superior to selecting slices randomly or at fixed intervals, provided that each volume is allocated the same number of annotated slices. 3) Interpolating masks between annotated slices rarely enhances model performance, with exceptions of some specific configuration for 3D models.
We find that the well-trained victim models (VMs), against which the attacks are generated, serve as fundamental prerequisites for adversarial attacks, i.e. a segmentation VM is needed to generate attacks for segmentation. In this context, the victim model is assumed to be robust to achieve effective adversarial perturbation generation. Instead of focusing on improving the robustness of the task-specific victim models, we shift our attention to image generation. From an image generation perspective, we derive a novel VM for segmentation, aiming to generate adversarial perturbations for segmentation tasks without requiring models explicitly designed for image segmentation. Our approach to adversarial attack generation diverges from conventional white-box or black-box attacks, offering a fresh outlook on adversarial attack strategies. Experiments show that our attack method is able to generate effective adversarial attacks with good transferability.
Structural Health Monitoring (SHM) is a sustainable and essential approach for infrastructure maintenance, enabling the early detection of structural defects. Leveraging computer vision (CV) methods for automated infrastructure monitoring can significantly enhance monitoring efficiency and precision. However, these methods often face challenges in efficiency and accuracy, particularly in complex environments. Recent CNN-based and SAM-based approaches have demonstrated excellent performance in crack segmentation, but their high computational demands limit their applicability on edge devices. This paper introduces CrackESS, a novel system for detecting and segmenting concrete cracks. The approach first utilizes a YOLOv8 model for self-prompting and a LoRA-based fine-tuned SAM model for crack segmentation, followed by refining the segmentation masks through the proposed Crack Mask Refinement Module (CMRM). We conduct experiments on three datasets(Khanhha's dataset, Crack500, CrackCR) and validate CrackESS on a climbing robot system to demonstrate the advantage and effectiveness of our approach.
Deep learning has made significant strides in automated brain tumor segmentation from magnetic resonance imaging (MRI) scans in recent years. However, the reliability of these tools is hampered by the presence of poor-quality segmentation outliers, particularly in out-of-distribution samples, making their implementation in clinical practice difficult. Therefore, there is a need for quality control (QC) to screen the quality of the segmentation results. Although numerous automatic QC methods have been developed for segmentation quality screening, most were designed for cardiac MRI segmentation, which involves a single modality and a single tissue type. Furthermore, most prior works only provided subject-level predictions of segmentation quality and did not identify erroneous parts segmentation that may require refinement. To address these limitations, we proposed a novel multi-task deep learning architecture, termed QCResUNet, which produces subject-level segmentation-quality measures as well as voxel-level segmentation error maps for each available tissue class. To validate the effectiveness of the proposed method, we conducted experiments on assessing its performance on evaluating the quality of two distinct segmentation tasks. First, we aimed to assess the quality of brain tumor segmentation results. For this task, we performed experiments on one internal and two external datasets. Second, we aimed to evaluate the segmentation quality of cardiac Magnetic Resonance Imaging (MRI) data from the Automated Cardiac Diagnosis Challenge. The proposed method achieved high performance in predicting subject-level segmentation-quality metrics and accurately identifying segmentation errors on a voxel basis. This has the potential to be used to guide human-in-the-loop feedback to improve segmentations in clinical settings.
Thyroid nodule segmentation in ultrasound images is crucial for accurate diagnosis and treatment planning. However, existing methods face challenges in segmentation accuracy, interpretability, and generalization, which hinder their performance. This letter proposes a novel framework, CLIP-TNseg, to address these issues by integrating a multimodal large model with a neural network architecture. CLIP-TNseg consists of two main branches: the Coarse-grained Branch, which extracts high-level semantic features from a frozen CLIP model, and the Fine-grained Branch, which captures fine-grained features using U-Net style residual blocks. These features are fused and processed by the prediction head to generate precise segmentation maps. CLIP-TNseg leverages the Coarse-grained Branch to enhance semantic understanding through textual and high-level visual features, while the Fine-grained Branch refines spatial details, enabling precise and robust segmentation. Extensive experiments on public and our newly collected datasets demonstrate its competitive performance. Our code and the original dataset are available at https://github.com/jayxjsun/CLIP-TNseg.
Osteoporosis is a widespread and chronic metabolic bone disease that often remains undiagnosed and untreated due to limited access to bone mineral density (BMD) tests like Dual-energy X-ray absorptiometry (DXA). In response to this challenge, current advancements are pivoting towards detecting osteoporosis by examining alternative indicators from peripheral bone areas, with the goal of increasing screening rates without added expenses or time. In this paper, we present a method to predict osteoporosis using hand and wrist X-ray images, which are both widely accessible and affordable, though their link to DXA-based data is not thoroughly explored. We employ a sophisticated image segmentation model that utilizes a mixture of probabilistic U-Net decoders, specifically designed to capture predictive uncertainty in the segmentation of the ulna, radius, and metacarpal bones. This model is formulated as an optimal transport (OT) problem, enabling it to handle the inherent uncertainties in image segmentation more effectively. Further, we adopt a self-supervised learning (SSL) approach to extract meaningful representations without the need for explicit labels, and move on to classify osteoporosis in a supervised manner. Our method is evaluated on a dataset with 192 individuals, cross-referencing their verified osteoporosis conditions against the standard DXA test. With a notable classification score, this integration of uncertainty-aware segmentation and self-supervised learning represents a pioneering effort in leveraging vision-based techniques for the early detection of osteoporosis from peripheral skeletal sites.
Spinal cord tumors significantly contribute to neurological morbidity and mortality. Precise morphometric quantification, encompassing the size, location, and type of such tumors, holds promise for optimizing treatment planning strategies. Although recent methods have demonstrated excellent performance in medical image segmentation, they primarily focus on discerning shapes with relatively large morphology such as brain tumors, ignoring the challenging problem of identifying spinal cord tumors which tend to have tiny sizes, diverse locations, and shapes. To tackle this hard problem of multiclass spinal cord tumor segmentation, we propose a new method, called BATseg, to learn a tumor surface distance field by applying our new multiclass boundary-aware loss function. To verify the effectiveness of our approach, we also introduce the first and large-scale spinal cord tumor dataset. It comprises gadolinium-enhanced T1-weighted 3D MRI scans from 653 patients and contains the four most common spinal cord tumor types: astrocytomas, ependymomas, hemangioblastomas, and spinal meningiomas. Extensive experiments on our dataset and another public kidney tumor segmentation dataset show that our proposed method achieves superior performance for multiclass tumor segmentation.
Multi-class semantic segmentation remains a cornerstone challenge in computer vision. Yet, dataset creation remains excessively demanding in time and effort, especially for specialized domains. Active Learning (AL) mitigates this challenge by selecting data points for annotation strategically. However, existing patch-based AL methods often overlook boundary pixels critical information, essential for accurate segmentation. We present OREAL, a novel patch-based AL method designed for multi-class semantic segmentation. OREAL enhances boundary detection by employing maximum aggregation of pixel-wise uncertainty scores. Additionally, we introduce one-vs-rest entropy, a novel uncertainty score function that computes class-wise uncertainties while achieving implicit class balancing during dataset creation. Comprehensive experiments across diverse datasets and model architectures validate our hypothesis.
We focus on tertiary lymphoid structure (TLS) semantic segmentation in whole slide image (WSI). Unlike TLS binary segmentation, TLS semantic segmentation identifies boundaries and maturity, which requires integrating contextual information to discover discriminative features. Due to the extensive scale of WSI (e.g., 100,000 \times 100,000 pixels), the segmentation of TLS is usually carried out through a patch-based strategy. However, this prevents the model from accessing information outside of the patches, limiting the performance. To address this issue, we propose GCUNet, a GNN-based contextual learning network for TLS semantic segmentation. Given an image patch (target) to be segmented, GCUNet first progressively aggregates long-range and fine-grained context outside the target. Then, a Detail and Context Fusion block (DCFusion) is designed to integrate the context and detail of the target to predict the segmentation mask. We build four TLS semantic segmentation datasets, called TCGA-COAD, TCGA-LUSC, TCGA-BLCA and INHOUSE-PAAD, and make the former three datasets (comprising 826 WSIs and 15,276 TLSs) publicly available to promote the TLS semantic segmentation. Experiments on these datasets demonstrate the superiority of GCUNet, achieving at least 7.41% improvement in mF1 compared with SOTA.
Autonomous driving has garnered significant attention in recent research, and Bird's-Eye-View (BEV) map segmentation plays a vital role in the field, providing the basis for safe and reliable operation. While data augmentation is a commonly used technique for improving BEV map segmentation networks, existing approaches predominantly focus on manipulating spatial domain representations. In this work, we investigate the potential of frequency domain data augmentation for camera-based BEV map segmentation. We observe that high-frequency information in camera images is particularly crucial for accurate segmentation. Based on this insight, we propose High-frequency Shuffle Data Augmentation (HSDA), a novel data augmentation strategy that enhances a network's ability to interpret high-frequency image content. This approach encourages the network to distinguish relevant high-frequency information from noise, leading to improved segmentation results for small and intricate image regions, as well as sharper edge and detail perception. Evaluated on the nuScenes dataset, our method demonstrates broad applicability across various BEV map segmentation networks, achieving a new state-of-the-art mean Intersection over Union (mIoU) of 61.3% for camera-only systems. This significant improvement underscores the potential of frequency domain data augmentation for advancing the field of autonomous driving perception. Code has been released: https://github.com/Zarhult/HSDA
Medical image segmentation involves partitioning medical images into meaningful regions, with a focus on identifying anatomical structures and lesions. It has broad applications in healthcare, and deep learning methods have enabled significant advancements in automating this process. Recently, the introduction of the Segmentation Anything Model (SAM), the first foundation model for segmentation task, has prompted researchers to adapt it for the medical domain to improve performance across various tasks. However, SAM's large model size and high GPU requirements hinder its scalability and development in the medical domain. In this work, we propose MCP-MedSAM, a powerful and lightweight medical SAM model designed to be trainable on a single A100 GPU with 40GB of memory within one day while delivering superior segmentation performance. Recognizing the significant internal differences between modalities and the need for direct segmentation target information within bounding boxes, we introduce two kinds of prompts: the modality prompt and the content prompt. After passing through the prompt encoder, their embedding representations can further improve the segmentation performance by incorporating more relevant information without adding significant training overhead. Additionally, we adopt an effective modality-based data sampling strategy to address data imbalance between modalities, ensuring more balanced performance across all modalities. Our method was trained and evaluated using a large-scale challenge dataset, compared to top-ranking methods on the challenge leaderboard, MCP-MedSAM achieved superior performance while requiring only one day of training on a single GPU. The code is publicly available at \textcolor{blue}{https://github.com/dong845/MCP-MedSAM}.}