Personal knowledge graphs (PKGs) offer individuals a way to store and consolidate their fragmented personal data in a central place, improving service personalization while maintaining full user control. Despite their potential, practical PKG implementations with user-friendly interfaces remain scarce. This work addresses this gap by proposing a complete solution to represent, manage, and interface with PKGs. Our approach includes (1) a user-facing PKG Client, enabling end-users to administer their personal data easily via natural language statements, and (2) a service-oriented PKG API. To tackle the complexity of representing these statements within a PKG, we present an RDF-based PKG vocabulary that supports this, along with properties for access rights and provenance.
We report a mixture of expert strategy to create fine-tuned large language models using a deep layer-wise token-level approach based on low-rank adaptation (LoRA). Starting with a set of pre-trained LoRA adapters, our gating strategy uses the hidden states to dynamically mix adapted layers, allowing the resulting X-LoRA model to draw upon different capabilities and create never-before-used deep layer-wise combinations to solve tasks. The design is inspired by the biological principles of universality and diversity, where neural network building blocks are reused in different hierarchical manifestations. Hence, the X-LoRA model can be easily implemented for any existing large language model (LLM) without a need for modifications of the underlying structure. We develop a tailored X-LoRA model that offers scientific capabilities including forward/inverse analysis tasks and enhanced reasoning capability, focused on biomaterial analysis, protein mechanics and design. The impact of this work include access to readily expandable and adaptable models with strong domain knowledge and the capability to integrate across areas of knowledge. Featuring experts in biology, mathematics, reasoning, bio-inspired materials, mechanics and materials, chemistry, protein biophysics, mechanics and quantum-mechanics based molecular properties, we conduct a series of physics-focused case studies. We examine knowledge recall, protein mechanics forward/inverse tasks, protein design, adversarial agentic modeling including ontological knowledge graph construction, as well as molecular design. The model is capable not only of making quantitative predictions of nanomechanical properties of proteins or quantum mechanical molecular properties, but also reasons over the results and correctly predicts likely mechanisms that explain distinct molecular behaviors.
Knowledge Graphs (KGs) have become increasingly common for representing large-scale linked data. However, their immense size has required graph learning systems to assist humans in analysis, interpretation, and pattern detection. While there have been promising results for researcher- and clinician- empowerment through a variety of KG learning systems, we identify four key deficiencies in state-of-the-art graph learning that simultaneously limit KG learning performance and diminish the ability of humans to interface optimally with these learning systems. These deficiencies are: 1) lack of expert knowledge integration, 2) instability to node degree extremity in the KG, 3) lack of consideration for uncertainty and relevance while learning, and 4) lack of explainability. Furthermore, we characterise state-of-the-art attempts to solve each of these problems and note that each attempt has largely been isolated from attempts to solve the other problems. Through a formalisation of these problems and a review of the literature that addresses them, we adopt the position that not only are deficiencies in these four key areas holding back human-KG empowerment, but that the divide-and-conquer approach to solving these problems as individual units rather than a whole is a significant barrier to the interface between humans and KG learning systems. We propose that it is only through integrated, holistic solutions to the limitations of KG learning systems that human and KG learning co-empowerment will be efficiently affected. We finally present our "Veni, Vidi, Vici" framework that sets a roadmap for effectively and efficiently shifting to a holistic co-empowerment model in both the KG learning and the broader machine learning domain.
Social networks are vital for information sharing, especially in the health sector for discussing diseases and treatments. These platforms, however, often feature posts as brief texts, posing challenges for Artificial Intelligence (AI) in understanding context. We introduce a novel hybrid approach combining community-maintained knowledge graphs (like Wikidata) with deep learning to enhance the categorization of social media posts. This method uses advanced entity recognizers and linkers (like Falcon 2.0) to connect short post entities to knowledge graphs. Knowledge graph embeddings (KGEs) and contextualized word embeddings (like BERT) are then employed to create rich, context-based representations of these posts. Our focus is on the health domain, particularly in identifying posts related to eating disorders (e.g., anorexia, bulimia) to aid healthcare providers in early diagnosis. We tested our approach on a dataset of 2,000 tweets about eating disorders, finding that merging word embeddings with knowledge graph information enhances the predictive models' reliability. This methodology aims to assist health experts in spotting patterns indicative of mental disorders, thereby improving early detection and accurate diagnosis for personalized medicine.
Knowledge Graphs (KGs) play a pivotal role in advancing various AI applications, with the semantic web community's exploration into multi-modal dimensions unlocking new avenues for innovation. In this survey, we carefully review over 300 articles, focusing on KG-aware research in two principal aspects: KG-driven Multi-Modal (KG4MM) learning, where KGs support multi-modal tasks, and Multi-Modal Knowledge Graph (MM4KG), which extends KG studies into the MMKG realm. We begin by defining KGs and MMKGs, then explore their construction progress. Our review includes two primary task categories: KG-aware multi-modal learning tasks, such as Image Classification and Visual Question Answering, and intrinsic MMKG tasks like Multi-modal Knowledge Graph Completion and Entity Alignment, highlighting specific research trajectories. For most of these tasks, we provide definitions, evaluation benchmarks, and additionally outline essential insights for conducting relevant research. Finally, we discuss current challenges and identify emerging trends, such as progress in Large Language Modeling and Multi-modal Pre-training strategies. This survey aims to serve as a comprehensive reference for researchers already involved in or considering delving into KG and multi-modal learning research, offering insights into the evolving landscape of MMKG research and supporting future work.
Node Importance Estimation (NIE) is crucial for integrating external information into Large Language Models through Retriever-Augmented Generation. Traditional methods, focusing on static, single-graph characteristics, lack adaptability to new graphs and user-specific requirements. CADReN, our proposed method, addresses these limitations by introducing a Contextual Anchor (CA) mechanism. This approach enables the network to assess node importance relative to the CA, considering both structural and semantic features within Knowledge Graphs (KGs). Extensive experiments show that CADReN achieves better performance in cross-graph NIE task, with zero-shot prediction ability. CADReN is also proven to match the performance of previous models on single-graph NIE task. Additionally, we introduce and opensource two new datasets, RIC200 and WK1K, specifically designed for cross-graph NIE research, providing a valuable resource for future developments in this domain.
Research surveys have always posed a challenge for beginner researchers who lack of research training. These researchers struggle to understand the directions within their research topic, and the discovery of new research findings within a short time. One way to provide intuitive assistance to beginner researchers is by offering relevant knowledge graphs(KG) and recommending related academic papers. However, existing navigation knowledge graphs primarily rely on keywords in the research field and often fail to present the logical hierarchy among multiple related papers clearly. Moreover, most recommendation systems for academic papers simply rely on high text similarity, which can leave researchers confused as to why a particular article is being recommended. They may lack of grasp important information about the insight connection between "Issue resolved" and "Issue finding" that they hope to obtain. To address these issues, this study aims to support research insight surveys for beginner researchers by establishing a hierarchical tree-structured knowledge graph that reflects the inheritance insight of research topics and the relevance insight among the academic papers.
Clifford algebras are a natural generalization of the real numbers, the complex numbers, and the quaternions. So far, solely Clifford algebras of the form $Cl_{p,q}$ (i.e., algebras without nilpotent base vectors) have been studied in the context of knowledge graph embeddings. We propose to consider nilpotent base vectors with a nilpotency index of two. In these spaces, denoted $Cl_{p,q,r}$, allows generalizing over approaches based on dual numbers (which cannot be modelled using $Cl_{p,q}$) and capturing patterns that emanate from the absence of higher-order interactions between real and complex parts of entity embeddings. We design two new models for the discovery of the parameters $p$, $q$, and $r$. The first model uses a greedy search to optimize $p$, $q$, and $r$. The second predicts $(p, q,r)$ based on an embedding of the input knowledge graph computed using neural networks. The results of our evaluation on seven benchmark datasets suggest that nilpotent vectors can help capture embeddings better. Our comparison against the state of the art suggests that our approach generalizes better than other approaches on all datasets w.r.t. the MRR it achieves on validation data. We also show that a greedy search suffices to discover values of $p$, $q$ and $r$ that are close to optimal.
The recent success of Large Language Models (LLM) in a wide range of Natural Language Processing applications opens the path towards novel Question Answering Systems over Knowledge Graphs leveraging LLMs. However, one of the main obstacles preventing their implementation is the scarcity of training data for the task of translating questions into corresponding SPARQL queries, particularly in the case of domain-specific KGs. To overcome this challenge, in this study, we evaluate several strategies for fine-tuning the OpenLlama LLM for question answering over life science knowledge graphs. In particular, we propose an end-to-end data augmentation approach for extending a set of existing queries over a given knowledge graph towards a larger dataset of semantically enriched question-to-SPARQL query pairs, enabling fine-tuning even for datasets where these pairs are scarce. In this context, we also investigate the role of semantic "clues" in the queries, such as meaningful variable names and inline comments. Finally, we evaluate our approach over the real-world Bgee gene expression knowledge graph and we show that semantic clues can improve model performance by up to 33% compared to a baseline with random variable names and no comments included.
The digital landscape continually evolves with multimodality, enriching the online experience for users. Creators and marketers aim to weave subtle contextual cues from various modalities into congruent content to engage users with a harmonious message. This interplay of multimodal cues is often a crucial factor in attracting users' attention. However, this richness of multimodality presents a challenge to computational modeling, as the semantic contextual cues spanning across modalities need to be unified to capture the true holistic meaning of the multimodal content. This contextual meaning is critical in attracting user engagement as it conveys the intended message of the brand or the organization. In this work, we incorporate external commonsense knowledge from knowledge graphs to enhance the representation of multimodal data using compact Visual Language Models (VLMs) and predict the success of multi-modal crowdfunding campaigns. Our results show that external knowledge commonsense bridges the semantic gap between text and image modalities, and the enhanced knowledge-infused representations improve the predictive performance of models for campaign success upon the baselines without knowledge. Our findings highlight the significance of contextual congruence in online multimodal content for engaging and successful crowdfunding campaigns.
Link prediction with knowledge graphs has been thoroughly studied in graph machine learning, leading to a rich landscape of graph neural network architectures with successful applications. Nonetheless, it remains challenging to transfer the success of these architectures to relational hypergraphs, where the task of link prediction is over $k$-ary relations, which is substantially harder than link prediction with knowledge graphs. In this paper, we propose a framework for link prediction with relational hypergraphs, unlocking applications of graph neural networks to fully relational structures. Theoretically, we conduct a thorough analysis of the expressive power of the resulting model architectures via corresponding relational Weisfeiler-Leman algorithms and also via logical expressiveness. Empirically, we validate the power of the proposed model architectures on various relational hypergraph benchmarks. The resulting model architectures substantially outperform every baseline for inductive link prediction, and lead to state-of-the-art results for transductive link prediction.
Knowledge graphs (KGs) have garnered significant attention for their vast potential across diverse domains. However, the issue of outdated facts poses a challenge to KGs, affecting their overall quality as real-world information evolves. Existing solutions for outdated fact detection often rely on manual recognition. In response, this paper presents DEAN (Deep outdatEd fAct detectioN), a novel deep learning-based framework designed to identify outdated facts within KGs. DEAN distinguishes itself by capturing implicit structural information among facts through comprehensive modeling of both entities and relations. To effectively uncover latent out-of-date information, DEAN employs a contrastive approach based on a pre-defined Relations-to-Nodes (R2N) graph, weighted by the number of entities. Experimental results demonstrate the effectiveness and superiority of DEAN over state-of-the-art baseline methods.
Large language models (LLMs) constitute a breakthrough state-of-the-art Artificial Intelligence technology which is rapidly evolving and promises to aid in medical diagnosis. However, the correctness and the accuracy of their returns has not yet been properly evaluated. In this work, we propose an LLM evaluation paradigm that incorporates two independent steps of a novel methodology, namely (1) multimodal LLM evaluation via structured interactions and (2) follow-up, domain-specific analysis based on data extracted via the previous interactions. Using this paradigm, (1) we evaluate the correctness and accuracy of LLM-generated medical diagnosis with publicly available multimodal multiple-choice questions(MCQs) in the domain of Pathology and (2) proceed to a systemic and comprehensive analysis of extracted results. We used GPT-4-Vision-Preview as the LLM to respond to complex, medical questions consisting of both images and text, and we explored a wide range of diseases, conditions, chemical compounds, and related entity types that are included in the vast knowledge domain of Pathology. GPT-4-Vision-Preview performed quite well, scoring approximately 84\% of correct diagnoses. Next, we further analyzed the findings of our work, following an analytical approach which included Image Metadata Analysis, Named Entity Recognition and Knowledge Graphs. Weaknesses of GPT-4-Vision-Preview were revealed on specific knowledge paths, leading to a further understanding of its shortcomings in specific areas. Our methodology and findings are not limited to the use of GPT-4-Vision-Preview, but a similar approach can be followed to evaluate the usefulness and accuracy of other LLMs and, thus, improve their use with further optimization.
Knowledge Graph Completion (KGC) is crucial for addressing knowledge graph incompleteness and supporting downstream applications. Many models have been proposed for KGC. They can be categorized into two main classes: triple-based and text-based approaches. Triple-based methods struggle with long-tail entities due to limited structural information and imbalanced entity distributions. Text-based methods alleviate this issue but require costly training for language models and specific finetuning for knowledge graphs, which limits their efficiency. To alleviate these limitations, in this paper, we propose KICGPT, a framework that integrates a large language model (LLM) and a triple-based KGC retriever. It alleviates the long-tail problem without incurring additional training overhead. KICGPT uses an in-context learning strategy called Knowledge Prompt, which encodes structural knowledge into demonstrations to guide the LLM. Empirical results on benchmark datasets demonstrate the effectiveness of KICGPT with smaller training overhead and no finetuning.
Information retrieval (IR) methods for KGQA consist of two stages: subgraph extraction and answer reasoning. We argue current subgraph extraction methods underestimate the importance of structural dependencies among evidence facts. We propose Evidence Pattern Retrieval (EPR) to explicitly model the structural dependencies during subgraph extraction. We implement EPR by indexing the atomic adjacency pattern of resource pairs. Given a question, we perform dense retrieval to obtain atomic patterns formed by resource pairs. We then enumerate their combinations to construct candidate evidence patterns. These evidence patterns are scored using a neural model, and the best one is selected to extract a subgraph for downstream answer reasoning. Experimental results demonstrate that the EPR-based approach has significantly improved the F1 scores of IR-KGQA methods by over 10 points on ComplexWebQuestions and achieves competitive performance on WebQuestionsSP.
Weakly Supervised Entity Alignment (EA) is the task of identifying equivalent entities across diverse knowledge graphs (KGs) using only a limited number of seed alignments. Despite substantial advances in aggregation-based weakly supervised EA, the underlying mechanisms in this setting remain unexplored. In this paper, we present a propagation perspective to analyze weakly supervised EA and explain the existing aggregation-based EA models. Our theoretical analysis reveals that these models essentially seek propagation operators for pairwise entity similarities. We further prove that, despite the structural heterogeneity of different KGs, the potentially aligned entities within aggregation-based EA models have isomorphic subgraphs, which is the core premise of EA but has not been investigated. Leveraging this insight, we introduce a potential isomorphism propagation operator to enhance the propagation of neighborhood information across KGs. We develop a general EA framework, PipEA, incorporating this operator to improve the accuracy of every type of aggregation-based model without altering the learning process. Extensive experiments substantiate our theoretical findings and demonstrate PipEA's significant performance gains over state-of-the-art weakly supervised EA methods. Our work not only advances the field but also enhances our comprehension of aggregation-based weakly supervised EA.
Understanding and anticipating intraoperative events and actions is critical for intraoperative assistance and decision-making during minimally invasive surgery. Automated prediction of events, actions, and the following consequences is addressed through various computational approaches with the objective of augmenting surgeons' perception and decision-making capabilities. We propose a predictive neural network that is capable of understanding and predicting critical interactive aspects of surgical workflow from intra-abdominal video, while flexibly leveraging surgical knowledge graphs. The approach incorporates a hypergraph-transformer (HGT) structure that encodes expert knowledge into the network design and predicts the hidden embedding of the graph. We verify our approach on established surgical datasets and applications, including the detection and prediction of action triplets, and the achievement of the Critical View of Safety (CVS). Moreover, we address specific, safety-related tasks, such as predicting the clipping of cystic duct or artery without prior achievement of the CVS. Our results demonstrate the superiority of our approach compared to unstructured alternatives.
Pre-trained language models (LMs) are able to perform complex reasoning without explicit fine-tuning. To understand how pre-training with a next-token prediction objective contributes to the emergence of such reasoning capability, we propose that we can view an LM as deriving new conclusions by aggregating indirect reasoning paths seen at pre-training time. We found this perspective effective in two important cases of reasoning: logic reasoning with knowledge graphs (KGs) and chain-of-thought (CoT) reasoning. More specifically, we formalize the reasoning paths as random walk paths on the knowledge/reasoning graphs. Analyses of learned LM distributions suggest that a weighted sum of relevant random walk path probabilities is a reasonable way to explain how LMs reason. Experiments and analysis on multiple KG and CoT datasets reveal the effect of training on random walk paths and suggest that augmenting unlabeled random walk reasoning paths can improve real-world multi-step reasoning performance. code: https://github.com/WANGXinyiLinda/LM_random_walk
Generating natural language text from graph-structured data is essential for conversational information seeking. Semantic triples derived from knowledge graphs can serve as a valuable source for grounding responses from conversational agents by providing a factual basis for the information they communicate. This is especially relevant in the context of large language models, which offer great potential for conversational interaction but are prone to hallucinating, omitting, or producing conflicting information. In this study, we conduct an empirical analysis of conversational large language models in generating natural language text from semantic triples. We compare four large language models of varying sizes with different prompting techniques. Through a series of benchmark experiments on the WebNLG dataset, we analyze the models' performance and identify the most common issues in the generated predictions. Our findings show that the capabilities of large language models in triple verbalization can be significantly improved through few-shot prompting, post-processing, and efficient fine-tuning techniques, particularly for smaller models that exhibit lower zero-shot performance.
Knowledge Graphs popularity has been rapidly growing in last years. All that knowledge is available for people to query it through the many online databases on the internet. Though, it would be a great achievement if non-programmer users could access whatever information they want to know. There has been a lot of effort oriented to solve this task using natural language processing tools and creativity encouragement by way of many challenges. Our approach focuses on assuming a correct entity linking on the natural language questions and training a GPT model to create SPARQL queries from them. We managed to isolate which property of the task can be the most difficult to solve at few or zero-shot and we proposed pre-training on all entities (under CWA) to improve the performance. We obtained a 62.703% accuracy of exact SPARQL matches on testing at 3-shots, a F1 of 0.809 on the entity linking challenge and a F1 of 0.009 on the question answering challenge.