Large language models (LLMs) have demonstrated impressive generative capabilities with the potential to innovate in medicine. However, the application of LLMs in real clinical settings remains challenging due to the lack of factual consistency in the generated content. In this work, we develop an augmented LLM framework, KG-Rank, which leverages a medical knowledge graph (KG) along with ranking and re-ranking techniques, to improve the factuality of long-form question answering (QA) in the medical domain. Specifically, when receiving a question, KG-Rank automatically identifies medical entities within the question and retrieves the related triples from the medical KG to gather factual information. Subsequently, KG-Rank innovatively applies multiple ranking techniques to refine the ordering of these triples, providing more relevant and precise information for LLM inference. To the best of our knowledge, KG-Rank is the first application of KG combined with ranking models in medical QA specifically for generating long answers. Evaluation on four selected medical QA datasets demonstrates that KG-Rank achieves an improvement of over 18% in ROUGE-L score. Additionally, we extend KG-Rank to open domains, including law, business, music, and history, where it realizes a 14% improvement in ROUGE-L score, indicating the effectiveness and great potential of KG-Rank.
Despite advancements in on-topic dialogue systems, effectively managing topic shifts within dialogues remains a persistent challenge, largely attributed to the limited availability of training datasets. To address this issue, we propose Multi-Passage to Dialogue (MP2D), a data generation framework that automatically creates conversational question-answering datasets with natural topic transitions. By leveraging the relationships between entities in a knowledge graph, MP2D maps the flow of topics within a dialogue, effectively mirroring the dynamics of human conversation. It retrieves relevant passages corresponding to the topics and transforms them into dialogues through the passage-to-dialogue method. Through quantitative and qualitative experiments, we demonstrate MP2D's efficacy in generating dialogue with natural topic shifts. Furthermore, this study introduces a novel benchmark for topic shift dialogues, TS-WikiDialog. Utilizing the dataset, we demonstrate that even Large Language Models (LLMs) struggle to handle topic shifts in dialogue effectively, and we showcase the performance improvements of models trained on datasets generated by MP2D across diverse topic shift dialogue tasks.
In the realm of computational knowledge representation, Knowledge Graph Reasoning (KG-R) stands at the forefront of facilitating sophisticated inferential capabilities across multifarious domains. The quintessence of this research elucidates the employment of reinforcement learning (RL) strategies, notably the REINFORCE algorithm, to navigate the intricacies inherent in multi-hop KG-R. This investigation critically addresses the prevalent challenges introduced by the inherent incompleteness of Knowledge Graphs (KGs), which frequently results in erroneous inferential outcomes, manifesting as both false negatives and misleading positives. By partitioning the Unified Medical Language System (UMLS) benchmark dataset into rich and sparse subsets, we investigate the efficacy of pre-trained BERT embeddings and Prompt Learning methodologies to refine the reward shaping process. This approach not only enhances the precision of multi-hop KG-R but also sets a new precedent for future research in the field, aiming to improve the robustness and accuracy of knowledge inference within complex KG frameworks. Our work contributes a novel perspective to the discourse on KG reasoning, offering a methodological advancement that aligns with the academic rigor and scholarly aspirations of the Natural journal, promising to invigorate further advancements in the realm of computational knowledge representation.
A Knowledge Graph (KG) is a heterogeneous graph encompassing a diverse range of node and edge types. Heterogeneous Graph Neural Networks (HGNNs) are popular for training machine learning tasks like node classification and link prediction on KGs. However, HGNN methods exhibit excessive complexity influenced by the KG's size, density, and the number of node and edge types. AI practitioners handcraft a subgraph of a KG G relevant to a specific task. We refer to this subgraph as a task-oriented subgraph (TOSG), which contains a subset of task-related node and edge types in G. Training the task using TOSG instead of G alleviates the excessive computation required for a large KG. Crafting the TOSG demands a deep understanding of the KG's structure and the task's objectives. Hence, it is challenging and time-consuming. This paper proposes KG-TOSA, an approach to automate the TOSG extraction for task-oriented HGNN training on a large KG. In KG-TOSA, we define a generic graph pattern that captures the KG's local and global structure relevant to a specific task. We explore different techniques to extract subgraphs matching our graph pattern: namely (i) two techniques sampling around targeted nodes using biased random walk or influence scores, and (ii) a SPARQL-based extraction method leveraging RDF engines' built-in indices. Hence, it achieves negligible preprocessing overhead compared to the sampling techniques. We develop a benchmark of real KGs of large sizes and various tasks for node classification and link prediction. Our experiments show that KG-TOSA helps state-of-the-art HGNN methods reduce training time and memory usage by up to 70% while improving the model performance, e.g., accuracy and inference time.
Knowledge graphs have garnered significant research attention and are widely used to enhance downstream applications. However, most current studies mainly focus on static knowledge graphs, whose facts do not change with time, and disregard their dynamic evolution over time. As a result, temporal knowledge graphs have attracted more attention because a large amount of structured knowledge exists only within a specific period. Knowledge graph representation learning aims to learn low-dimensional vector embeddings for entities and relations in a knowledge graph. The representation learning of temporal knowledge graphs incorporates time information into the standard knowledge graph framework and can model the dynamics of entities and relations over time. In this paper, we conduct a comprehensive survey of temporal knowledge graph representation learning and its applications. We begin with an introduction to the definitions, datasets, and evaluation metrics for temporal knowledge graph representation learning. Next, we propose a taxonomy based on the core technologies of temporal knowledge graph representation learning methods, and provide an in-depth analysis of different methods in each category. Finally, we present various downstream applications related to the temporal knowledge graphs. In the end, we conclude the paper and have an outlook on the future research directions in this area.
Large language models (LLMs) have achieved unprecedented performances in various applications, yet evaluating them is still challenging. Existing benchmarks are either manually constructed or are automatic, but lack the ability to evaluate the thought process of LLMs with arbitrary complexity. We contend that utilizing existing relational databases based on the entity-relationship (ER) model is a promising approach for constructing benchmarks as they contain structured knowledge that can be used to question LLMs. Unlike knowledge graphs, which are also used to evaluate LLMs, relational databases have integrity constraints that can be used to better construct complex in-depth questions and verify answers: (1) functional dependencies can be used to pinpoint critical keywords that an LLM must know to properly answer a given question containing certain attribute values; and (2) foreign key constraints can be used to join relations and construct multi-hop questions, which can be arbitrarily long and used to debug intermediate answers. We thus propose ERBench, which uses these integrity constraints to convert any database into an LLM benchmark. ERBench supports continuous evaluation as databases change, multimodal questions, and various prompt engineering techniques. In our experiments, we construct LLM benchmarks using databases of multiple domains and make an extensive comparison of contemporary LLMs. We show how ERBench can properly evaluate any LLM by not only checking for answer correctness, but also effectively verifying the rationales by looking for the right keywords.
With good explanatory power and controllability, rule-based methods play an important role in many tasks such as knowledge reasoning and decision support. However, existing studies primarily focused on learning chain-like rules, which limit their semantic expressions and accurate prediction abilities. As a result, chain-like rules usually fire on the incorrect grounding values, producing inaccurate or even erroneous reasoning results. In this paper, we propose the concept of tree-like rules on knowledge graphs to expand the application scope and improve the reasoning ability of rule-based methods. Meanwhile, we propose an effective framework for refining chain-like rules into tree-like rules. Experimental comparisons on four public datasets show that the proposed framework can easily adapt to other chain-like rule induction methods and the refined tree-like rules consistently achieve better performances than chain-like rules on link prediction. The data and code of this paper can be available at https://anonymous.4open.science/r/tree-rule-E3CD/.
Accurate Urban SpatioTemporal Prediction (USTP) is of great importance to the development and operation of the smart city. As an emerging building block, multi-sourced urban data are usually integrated as urban knowledge graphs (UrbanKGs) to provide critical knowledge for urban spatiotemporal prediction models. However, existing UrbanKGs are often tailored for specific downstream prediction tasks and are not publicly available, which limits the potential advancement. This paper presents UUKG, the unified urban knowledge graph dataset for knowledge-enhanced urban spatiotemporal predictions. Specifically, we first construct UrbanKGs consisting of millions of triplets for two metropolises by connecting heterogeneous urban entities such as administrative boroughs, POIs, and road segments. Moreover, we conduct qualitative and quantitative analysis on constructed UrbanKGs and uncover diverse high-order structural patterns, such as hierarchies and cycles, that can be leveraged to benefit downstream USTP tasks. To validate and facilitate the use of UrbanKGs, we implement and evaluate 15 KG embedding methods on the KG completion task and integrate the learned KG embeddings into 9 spatiotemporal models for five different USTP tasks. The extensive experimental results not only provide benchmarks of knowledge-enhanced USTP models under different task settings but also highlight the potential of state-of-the-art high-order structure-aware UrbanKG embedding methods. We hope the proposed UUKG fosters research on urban knowledge graphs and broad smart city applications. The dataset and source code are available at https://github.com/usail-hkust/UUKG/.
Treatment effect estimation (TEE) is the task of determining the impact of various treatments on patient outcomes. Current TEE methods fall short due to reliance on limited labeled data and challenges posed by sparse and high-dimensional observational patient data. To address the challenges, we introduce a novel pre-training and fine-tuning framework, KG-TREAT, which synergizes large-scale observational patient data with biomedical knowledge graphs (KGs) to enhance TEE. Unlike previous approaches, KG-TREAT constructs dual-focus KGs and integrates a deep bi-level attention synergy method for in-depth information fusion, enabling distinct encoding of treatment-covariate and outcome-covariate relationships. KG-TREAT also incorporates two pre-training tasks to ensure a thorough grounding and contextualization of patient data and KGs. Evaluation on four downstream TEE tasks shows KG-TREAT's superiority over existing methods, with an average improvement of 7% in Area under the ROC Curve (AUC) and 9% in Influence Function-based Precision of Estimating Heterogeneous Effects (IF-PEHE). The effectiveness of our estimated treatment effects is further affirmed by alignment with established randomized clinical trial findings.
Knowledge graph completion (KGC) is a widely used method to tackle incompleteness in knowledge graphs (KGs) by making predictions for missing links. Description-based KGC leverages pre-trained language models to learn entity and relation representations with their names or descriptions, which shows promising results. However, the performance of description-based KGC is still limited by the quality of text and the incomplete structure, as it lacks sufficient entity descriptions and relies solely on relation names, leading to sub-optimal results. To address this issue, we propose MPIKGC, a general framework to compensate for the deficiency of contextualized knowledge and improve KGC by querying large language models (LLMs) from various perspectives, which involves leveraging the reasoning, explanation, and summarization capabilities of LLMs to expand entity descriptions, understand relations, and extract structures, respectively. We conducted extensive evaluation of the effectiveness and improvement of our framework based on four description-based KGC models and four datasets, for both link prediction and triplet classification tasks.
Knowledge infusion is a promising method for enhancing Large Language Models for domain-specific NLP tasks rather than pre-training models over large data from scratch. These augmented LLMs typically depend on additional pre-training or knowledge prompts from an existing knowledge graph, which is impractical in many applications. In contrast, knowledge infusion directly from relevant documents is more generalisable and alleviates the need for structured knowledge graphs while also being useful for entities that are usually not found in any knowledge graph. With this motivation, we propose a simple yet generalisable approach for knowledge infusion by generating prompts from the context in the input text. Our experiments show the effectiveness of our approach which we evaluate by probing the fine-tuned LLMs.
Knowledge graph question answering (KGQA) is a well-established field that seeks to provide factual answers to natural language (NL) questions by leveraging knowledge graphs (KGs). However, existing KGQA datasets suffer from two significant limitations: (1) no existing KGQA dataset requires commonsense reasoning to arrive at an answer and (2) existing KGQA datasets focus on popular entities for which large language models (LLMs) can directly answer without hallucinating and without leveraging the KG. In this work, we seek a novel KGQA dataset that supports commonsense reasoning and focuses on long-tail entities (e.g., non-mainstream and recent entities) where LLMs frequently hallucinate, and thus create the need for novel methodologies that leverage the KG for factual and attributable commonsense inference. We create a novel Commonsense Reasoning (CR) and Long-Tail (LT) KGQA dataset with two subtasks -- question answering and claim verification -- that address both limitations (1) and (2). We construct CR-LT-KGQA by building extensions to existing reasoning datasets StrategyQA and CREAK over Wikidata. While existing KGQA methods are not applicable due to their lack of commonsense inference support, baseline evaluation of LLMs on CR-LT KGQA demonstrate a high rate of hallucination. Thus, CR-LT KGQA poses significant challenges for hallucination-prone LLMs, hence paving the way for future commonsense KGQA research to provide accurate and factual answers for long-tail entities in the era of LLMs.
Knowledge Graph Question Answering (KGQA) methods seek to answer Natural Language questions using the relational information stored in Knowledge Graphs (KGs). With the recent advancements of Large Language Models (LLMs) and their remarkable reasoning abilities, there is a growing trend to leverage them for KGQA. However, existing methodologies have only focused on answering factual questions, e.g., "In which city was Silvio Berlusconi's first wife born?", leaving questions involving commonsense reasoning that real-world users may pose more often, e.g., "Do I need separate visas to see the Venus of Willendorf and attend the Olympics this summer?" unaddressed. In this work, we first observe that existing LLM-based methods for KGQA struggle with hallucination on such questions, especially on queries targeting long-tail entities (e.g., non-mainstream and recent entities), thus hindering their applicability in real-world applications especially since their reasoning processes are not easily verifiable. In response, we propose Right for Right Reasons (R3), a commonsense KGQA methodology that allows for a verifiable reasoning procedure by axiomatically surfacing intrinsic commonsense knowledge of LLMs and grounding every factual reasoning step on KG triples. Through experimental evaluations across three different tasks--question answering, claim verification, and preference matching--our findings showcase R3 as a superior approach, outperforming existing methodologies and notably reducing instances of hallucination and reasoning errors.
Pretrained Large Language Models (LLMs) have gained significant attention for addressing open-domain Question Answering (QA). While they exhibit high accuracy in answering questions related to common knowledge, LLMs encounter difficulties in learning about uncommon long-tail knowledge (tail entities). Since manually constructing QA datasets demands substantial human resources, the types of existing QA datasets are limited, leaving us with a scarcity of datasets to study the performance of LLMs on tail entities. In this paper, we propose an automatic approach to generate specialized QA datasets for tail entities and present the associated research challenges. We conduct extensive experiments by employing pretrained LLMs on our newly generated long-tail QA datasets, comparing their performance with and without external resources including Wikipedia and Wikidata knowledge graphs.
The exponential growth of scientific literature requires effective management and extraction of valuable insights. While existing scientific search engines excel at delivering search results based on relational databases, they often neglect the analysis of collaborations between scientific entities and the evolution of ideas, as well as the in-depth analysis of content within scientific publications. The representation of heterogeneous graphs and the effective measurement, analysis, and mining of such graphs pose significant challenges. To address these challenges, we present AceMap, an academic system designed for knowledge discovery through academic graph. We present advanced database construction techniques to build the comprehensive AceMap database with large-scale academic entities that contain rich visual, textual, and numerical information. AceMap also employs innovative visualization, quantification, and analysis methods to explore associations and logical relationships among academic entities. AceMap introduces large-scale academic network visualization techniques centered on nebular graphs, providing a comprehensive view of academic networks from multiple perspectives. In addition, AceMap proposes a unified metric based on structural entropy to quantitatively measure the knowledge content of different academic entities. Moreover, AceMap provides advanced analysis capabilities, including tracing the evolution of academic ideas through citation relationships and concept co-occurrence, and generating concise summaries informed by this evolutionary process. In addition, AceMap uses machine reading methods to generate potential new ideas at the intersection of different fields. Exploring the integration of large language models and knowledge graphs is a promising direction for future research in idea evolution. Please visit \url{https://www.acemap.info} for further exploration.
The study of machine learning-based logical query answering enables reasoning with large-scale and incomplete knowledge graphs. This paper advances this area of research by addressing the uncertainty inherent in knowledge. While the uncertain nature of knowledge is widely recognized in the real world, it does not align seamlessly with the first-order logic that underpins existing studies. To bridge this gap, we explore the soft queries on uncertain knowledge, inspired by the framework of soft constraint programming. We propose a neural symbolic approach that incorporates both forward inference and backward calibration to answer soft queries on large-scale, incomplete, and uncertain knowledge graphs. Theoretical discussions demonstrate that our method avoids catastrophic cascading errors in the forward inference while maintaining the same complexity as state-of-the-art symbolic methods for complex logical queries. Empirical results validate the superior performance of our backward calibration compared to extended query embedding methods and neural symbolic approaches.
The proliferation of software vulnerabilities poses a significant challenge for security databases and analysts tasked with their timely identification, classification, and remediation. With the National Vulnerability Database (NVD) reporting an ever-increasing number of vulnerabilities, the traditional manual analysis becomes untenably time-consuming and prone to errors. This paper introduces VulnScopper, an innovative approach that utilizes multi-modal representation learning, combining Knowledge Graphs (KG) and Natural Language Processing (NLP), to automate and enhance the analysis of software vulnerabilities. Leveraging ULTRA, a knowledge graph foundation model, combined with a Large Language Model (LLM), VulnScopper effectively handles unseen entities, overcoming the limitations of previous KG approaches. We evaluate VulnScopper on two major security datasets, the NVD and the Red Hat CVE database. Our method significantly improves the link prediction accuracy between Common Vulnerabilities and Exposures (CVEs), Common Weakness Enumeration (CWEs), and Common Platform Enumerations (CPEs). Our results show that VulnScopper outperforms existing methods, achieving up to 78% Hits@10 accuracy in linking CVEs to CPEs and CWEs and presenting an 11.7% improvement over large language models in predicting CWE labels based on the Red Hat database. Based on the NVD, only 6.37% of the linked CPEs are being published during the first 30 days; many of them are related to critical and high-risk vulnerabilities which, according to multiple compliance frameworks (such as CISA and PCI), should be remediated within 15-30 days. Our model can uncover new products linked to vulnerabilities, reducing remediation time and improving vulnerability management. We analyzed several CVEs from 2023 to showcase this ability.
Recent studies have investigated utilizing Knowledge Graphs (KGs) to enhance Quesetion Answering (QA) performance of Large Language Models (LLMs), yet structured KG verbalization remains challengin. Existing methods, such as triple-form or free-form textual conversion of triple-form facts, encounter several issues. These include reduced evidence density due to duplicated entities or relationships, and reduced evidence clarity due to an inability to emphasize crucial evidence. To address these issues, we propose EFSum, an Evidence-focused Fact Summarization framework for enhanced QA with knowledge-augmented LLMs. We optimize an open-source LLM as a fact summarizer through distillation and preference alignment. Our extensive experiments show that EFSum improves LLM's zero-shot QA performance, and it is possible to ensure both the helpfulness and faithfulness of the summary.
One of the main challenges in the area of Neuro-Symbolic AI is to perform logical reasoning in the presence of both neural and symbolic data. This requires combining heterogeneous data sources such as knowledge graphs, neural model predictions, structured databases, crowd-sourced data, and many more. To allow for such reasoning, we generalise the standard rule-based language Datalog with existential rules (commonly referred to as tuple-generating dependencies) to the fuzzy setting, by allowing for arbitrary t-norms in the place of classical conjunctions in rule bodies. The resulting formalism allows us to perform reasoning about data associated with degrees of uncertainty while preserving computational complexity results and the applicability of reasoning techniques established for the standard Datalog setting. In particular, we provide fuzzy extensions of Datalog chases which produce fuzzy universal models and we exploit them to show that in important fragments of the language, reasoning has the same complexity as in the classical setting.
Phishing attacks have inflicted substantial losses on individuals and businesses alike, necessitating the development of robust and efficient automated phishing detection approaches. Reference-based phishing detectors (RBPDs), which compare the logos on a target webpage to a known set of logos, have emerged as the state-of-the-art approach. However, a major limitation of existing RBPDs is that they rely on a manually constructed brand knowledge base, making it infeasible to scale to a large number of brands, which results in false negative errors due to the insufficient brand coverage of the knowledge base. To address this issue, we propose an automated knowledge collection pipeline, using which we collect a large-scale multimodal brand knowledge base, KnowPhish, containing 20k brands with rich information about each brand. KnowPhish can be used to boost the performance of existing RBPDs in a plug-and-play manner. A second limitation of existing RBPDs is that they solely rely on the image modality, ignoring useful textual information present in the webpage HTML. To utilize this textual information, we propose a Large Language Model (LLM)-based approach to extract brand information of webpages from text. Our resulting multimodal phishing detection approach, KnowPhish Detector (KPD), can detect phishing webpages with or without logos. We evaluate KnowPhish and KPD on a manually validated dataset, and a field study under Singapore's local context, showing substantial improvements in effectiveness and efficiency compared to state-of-the-art baselines.