Recent studies have highlighted the effectiveness of tensor decomposition methods in the Temporal Knowledge Graphs Embedding (TKGE) task. However, we found that inherent heterogeneity among factor tensors in tensor decomposition significantly hinders the tensor fusion process and further limits the performance of link prediction. To overcome this limitation, we introduce a novel method that maps factor tensors onto a unified smooth Lie group manifold to make the distribution of factor tensors approximating homogeneous in tensor decomposition. We provide the theoretical proof of our motivation that homogeneous tensors are more effective than heterogeneous tensors in tensor fusion and approximating the target for tensor decomposition based TKGE methods. The proposed method can be directly integrated into existing tensor decomposition based TKGE methods without introducing extra parameters. Extensive experiments demonstrate the effectiveness of our method in mitigating the heterogeneity and in enhancing the tensor decomposition based TKGE models.
Knowledge graph completion (KGC) aims to alleviate the inherent incompleteness of knowledge graphs (KGs), which is a critical task for various applications, such as recommendations on the web. Although knowledge graph embedding (KGE) models have demonstrated superior predictive performance on KGC tasks, these models infer missing links in a black-box manner that lacks transparency and accountability, preventing researchers from developing accountable models. Existing KGE-based explanation methods focus on exploring key paths or isolated edges as explanations, which is information-less to reason target prediction. Additionally, the missing ground truth leads to these explanation methods being ineffective in quantitatively evaluating explored explanations. To overcome these limitations, we propose KGExplainer, a model-agnostic method that identifies connected subgraph explanations and distills an evaluator to assess them quantitatively. KGExplainer employs a perturbation-based greedy search algorithm to find key connected subgraphs as explanations within the local structure of target predictions. To evaluate the quality of the explored explanations, KGExplainer distills an evaluator from the target KGE model. By forwarding the explanations to the evaluator, our method can examine the fidelity of them. Extensive experiments on benchmark datasets demonstrate that KGExplainer yields promising improvement and achieves an optimal ratio of 83.3% in human evaluation.
The construction of large open knowledge bases (OKBs) is integral to many knowledge-driven applications on the world wide web such as web search. However, noun phrases and relational phrases in OKBs often suffer from redundancy and ambiguity, which calls for the investigation on OKB canonicalization. Current solutions address OKB canonicalization by devising advanced clustering algorithms and using knowledge graph embedding (KGE) to further facilitate the canonicalization process. Nevertheless, these works fail to fully exploit the synergy between clustering and KGE learning, and the methods designed for these subtasks are sub-optimal. To this end, we put forward a multi-task learning framework, namely MulCanon, to tackle OKB canonicalization. In addition, diffusion model is used in the soft clustering process to improve the noun phrase representations with neighboring information, which can lead to more accurate representations. MulCanon unifies the learning objectives of these sub-tasks, and adopts a two-stage multi-task learning paradigm for training. A thorough experimental study on popular OKB canonicalization benchmarks validates that MulCanon can achieve competitive canonicalization results.
Predictive process monitoring is a process mining task aimed at forecasting information about a running process trace, such as the most correct next activity to be executed. In medical domains, predictive process monitoring can provide valuable decision support in atypical and nontrivial situations. Decision support and quality assessment in medicine cannot ignore domain knowledge, in order to be grounded on all the available information (which is not limited to data) and to be really acceptable by end users. In this paper, we propose a predictive process monitoring approach relying on the use of a {\em transformer}, a deep learning architecture based on the attention mechanism. A major contribution of our work lies in the incorporation of ontological domain-specific knowledge, carried out through a graph positional encoding technique. The paper presents and discusses the encouraging experimental result we are collecting in the domain of stroke management.
Knowledge Graph Representation Learning (KGRL), or Knowledge Graph Embedding (KGE), is essential for AI applications such as knowledge construction and information retrieval. These models encode entities and relations into lower-dimensional vectors, supporting tasks like link prediction and recommendation systems. Training KGE models relies on both positive and negative samples for effective learning, but generating high-quality negative samples from existing knowledge graphs is challenging. The quality of these samples significantly impacts the model's accuracy. This comprehensive survey paper systematically reviews various negative sampling (NS) methods and their contributions to the success of KGRL. Their respective advantages and disadvantages are outlined by categorizing existing NS methods into six distinct categories. Moreover, this survey identifies open research questions that serve as potential directions for future investigations. By offering a generalization and alignment of fundamental NS concepts, this survey provides valuable insights for designing effective NS methods in the context of KGRL and serves as a motivating force for further advancements in the field.
Commonsense knowledge graph completion is a new challenge for commonsense knowledge graph construction and application. In contrast to factual knowledge graphs such as Freebase and YAGO, commonsense knowledge graphs (CSKGs; e.g., ConceptNet) utilize free-form text to represent named entities, short phrases, and events as their nodes. Such a loose structure results in large and sparse CSKGs, which makes the semantic understanding of these nodes more critical for learning rich commonsense knowledge graph embedding. While current methods leverage semantic similarities to increase the graph density, the semantic plausibility of the nodes and their relations are under-explored. Previous works adopt conceptual abstraction to improve the consistency of modeling (event) plausibility, but they are not scalable enough and still suffer from data sparsity. In this paper, we propose to adopt textual entailment to find implicit entailment relations between CSKG nodes, to effectively densify the subgraph connecting nodes within the same conceptual class, which indicates a similar level of plausibility. Each node in CSKG finds its top entailed nodes using a finetuned transformer over natural language inference (NLI) tasks, which sufficiently capture textual entailment signals. The entailment relation between these nodes are further utilized to: 1) build new connections between source triplets and entailed nodes to densify the sparse CSKGs; 2) enrich the generalization ability of node representations by comparing the node embeddings with a contrastive loss. Experiments on two standard CSKGs demonstrate that our proposed framework EntailE can improve the performance of CSKG completion tasks under both transductive and inductive settings.
Knowledge graph embedding (KGE) models achieved state-of-the-art results on many knowledge graph tasks including link prediction and information retrieval. Despite the superior performance of KGE models in practice, we discover a deficiency in the expressiveness of some popular existing KGE models called \emph{Z-paradox}. Motivated by the existence of Z-paradox, we propose a new KGE model called \emph{MQuinE} that does not suffer from Z-paradox while preserves strong expressiveness to model various relation patterns including symmetric/asymmetric, inverse, 1-N/N-1/N-N, and composition relations with theoretical justification. Experiments on real-world knowledge bases indicate that Z-paradox indeed degrades the performance of existing KGE models, and can cause more than 20\% accuracy drop on some challenging test samples. Our experiments further demonstrate that MQuinE can mitigate the negative impact of Z-paradox and outperform existing KGE models by a visible margin on link prediction tasks.
Embedding methods transform the knowledge graph into a continuous, low-dimensional space, facilitating inference and completion tasks. Existing methods are mainly divided into two types: translational distance models and semantic matching models. A key challenge in translational distance models is their inability to effectively differentiate between 'head' and 'tail' entities in graphs. To address this problem, a novel location-sensitive embedding (LSE) method has been developed. LSE innovatively modifies the head entity using relation-specific mappings, conceptualizing relations as linear transformations rather than mere translations. The theoretical foundations of LSE, including its representational capabilities and its connections to existing models, have been thoroughly examined. A more streamlined variant, LSEd, which employs a diagonal matrix for transformations to enhance practical efficiency, is also proposed. Experiments conducted on four large-scale KG datasets for link prediction show that LSEd either outperforms or is competitive with state-of-the-art related works.
In the rapidly advancing information era, various human behaviors are being precisely recorded in the form of data, including identity information, criminal records, and communication data. Law enforcement agencies can effectively maintain social security and precisely combat criminal activities by analyzing the aforementioned data. In comparison to traditional data analysis methods, deep learning models, relying on the robust computational power in cloud centers, exhibit higher accuracy in extracting data features and inferring data. However, within the architecture of cloud centers, the transmission of data from end devices introduces significant latency, hindering real-time inference of data. Furthermore, low-latency edge computing architectures face limitations in direct deployment due to relatively weak computing and storage capacities of nodes. To address these challenges, a lightweight distributed knowledge graph completion architecture is proposed. Firstly, we introduce a lightweight distributed knowledge graph completion architecture that utilizes knowledge graph embedding for data analysis. Subsequently, to filter out substandard data, a personnel data quality assessment method named PDQA is proposed. Lastly, we present a model pruning algorithm that significantly reduces the model size while maximizing performance, enabling lightweight deployment. In experiments, we compare the effects of 11 advanced models on completing the knowledge graph of public security personnel information. The results indicate that the RotatE model outperforms other models significantly in knowledge graph completion, with the pruned model size reduced by 70\%, and hits@10 reaching 86.97\%.}
Some of the most successful knowledge graph embedding (KGE) models for link prediction -- CP, RESCAL, TuckER, ComplEx -- can be interpreted as energy-based models. Under this perspective they are not amenable for exact maximum-likelihood estimation (MLE), sampling and struggle to integrate logical constraints. This work re-interprets the score functions of these KGEs as circuits -- constrained computational graphs allowing efficient marginalisation. Then, we design two recipes to obtain efficient generative circuit models by either restricting their activations to be non-negative or squaring their outputs. Our interpretation comes with little or no loss of performance for link prediction, while the circuits framework unlocks exact learning by MLE, efficient sampling of new triples, and guarantee that logical constraints are satisfied by design. Furthermore, our models scale more gracefully than the original KGEs on graphs with millions of entities.
The primary aim of Knowledge Graph embeddings (KGE) is to learn low-dimensional representations of entities and relations for predicting missing facts. While rotation-based methods like RotatE and QuatE perform well in KGE, they face two challenges: limited model flexibility requiring proportional increases in relation size with entity dimension, and difficulties in generalizing the model for higher-dimensional rotations. To address these issues, we introduce OrthogonalE, a novel KGE model employing matrices for entities and block-diagonal orthogonal matrices with Riemannian optimization for relations. This approach enhances the generality and flexibility of KGE models. The experimental results indicate that our new KGE model, OrthogonalE, is both general and flexible, significantly outperforming state-of-the-art KGE models while substantially reducing the number of relation parameters.
Recent studies focus on embedding learning over knowledge graphs, which map entities and relations in knowledge graphs into low-dimensional vector spaces. While existing models mainly consider the aspect of graph structure, there exists a wealth of contextual and literal information that can be utilized for more effective embedding learning. This paper introduces a novel model that incorporates both contextual and literal information into entity and relation embeddings by utilizing graph convolutional networks. Specifically, for contextual information, we assess its significance through confidence and relatedness metrics. In addition, a unique rule-based method is developed to calculate the confidence metric, and the relatedness metric is derived from the literal information's representations. We validate our model performance with thorough experiments on two established benchmark datasets.
Knowledge Graphs (KGs) such as Resource Description Framework (RDF) data represent relationships between various entities through the structure of triples (<subject, predicate, object>). Knowledge graph embedding (KGE) is crucial in machine learning applications, specifically in node classification and link prediction tasks. KGE remains a vital research topic within the semantic web community. RDF-star introduces the concept of a quoted triple (QT), a specific form of triple employed either as the subject or object within another triple. Moreover, RDF-star permits a QT to act as compositional entities within another QT, thereby enabling the representation of recursive, hyper-relational KGs with nested structures. However, existing KGE models fail to adequately learn the semantics of QTs and entities, primarily because they do not account for RDF-star graphs containing multi-leveled nested QTs and QT-QT relationships. This study introduces RDF-star2Vec, a novel KGE model specifically designed for RDF-star graphs. RDF-star2Vec introduces graph walk techniques that enable probabilistic transitions between a QT and its compositional entities. Feature vectors for QTs, entities, and relations are derived from generated sequences through the structured skip-gram model. Additionally, we provide a dataset and a benchmarking framework for data mining tasks focused on complex RDF-star graphs. Evaluative experiments demonstrated that RDF-star2Vec yielded superior performance compared to recent extensions of RDF2Vec in various tasks including classification, clustering, entity relatedness, and QT similarity.
Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that these KGEMs retain the graph's structure within their embedding space, \textit{i.e.}, position similar entities within the graph close to one another. This desirable property make KGEMs widely used in downstream tasks such as recommender systems or drug repurposing. Yet, the relation of entity similarity and similarity in the embedding space has rarely been formally evaluated. Typically, KGEMs are assessed based on their sole link prediction capabilities, using ranked-based metrics such as Hits@K or Mean Rank. This paper challenges the prevailing assumption that entity similarity in the graph is inherently mirrored in the embedding space. Therefore, we conduct extensive experiments to measure the capability of KGEMs to cluster similar entities together, and investigate the nature of the underlying factors. Moreover, we study if different KGEMs expose a different notion of similarity. Datasets, pre-trained embeddings and code are available at: https://github.com/nicolas-hbt/similar-embeddings/.
Binary similarity involves determining whether two binary programs exhibit similar functionality, often originating from the same source code. In this work, we propose VexIR2Vec, an approach for binary similarity using VEX-IR, an architecture-neutral Intermediate Representation (IR). We extract the embeddings from sequences of basic blocks, termed peepholes, derived by random walks on the control-flow graph. The peepholes are normalized using transformations inspired by compiler optimizations. The VEX-IR Normalization Engine mitigates, with these transformations, the architectural and compiler-induced variations in binaries while exposing semantic similarities. We then learn the vocabulary of representations at the entity level of the IR using the knowledge graph embedding techniques in an unsupervised manner. This vocabulary is used to derive function embeddings for similarity assessment using VexNet, a feed-forward Siamese network designed to position similar functions closely and separate dissimilar ones in an n-dimensional space. This approach is amenable for both diffing and searching tasks, ensuring robustness against Out-Of-Vocabulary (OOV) issues. We evaluate VexIR2Vec on a dataset comprising 2.7M functions and 15.5K binaries from 7 projects compiled across 12 compilers targeting x86 and ARM architectures. In diffing experiments, VexIR2Vec outperforms the nearest baselines by $40\%$, $18\%$, $21\%$, and $60\%$ in cross-optimization, cross-compilation, cross-architecture, and obfuscation settings, respectively. In the searching experiment, VexIR2Vec achieves a mean average precision of $0.76$, outperforming the nearest baseline by $46\%$. Our framework is highly scalable and is built as a lightweight, multi-threaded, parallel library using only open-source tools. VexIR2Vec is $3.1$-$3.5 \times$ faster than the closest baselines and orders-of-magnitude faster than other tools.
Knowledge graph embedding (KGE) models represent the entities and relations of a knowledge graph (KG) using dense continuous representations called embeddings. KGE methods have recently gained traction for tasks such as knowledge graph completion and reasoning as well as to provide suitable entity representations for downstream learning tasks. While a large part of the available literature focuses on small KGs, a number of frameworks that are able to train KGE models for large-scale KGs by parallelization across multiple GPUs or machines have recently been proposed. So far, the benefits and drawbacks of the various parallelization techniques have not been studied comprehensively. In this paper, we report on an experimental study in which we presented, re-implemented in a common computational framework, investigated, and improved the available techniques. We found that the evaluation methodologies used in prior work are often not comparable and can be misleading, and that most of currently implemented training methods tend to have a negative impact on embedding quality. We propose a simple but effective variation of the stratification technique used by PyTorch BigGraph for mitigation. Moreover, basic random partitioning can be an effective or even the best-performing choice when combined with suitable sampling techniques. Ultimately, we found that efficient and effective parallel training of large-scale KGE models is indeed achievable but requires a careful choice of techniques.
In the era of the Internet of Things (IoT), the retrieval of relevant medical information has become essential for efficient clinical decision-making. This paper introduces MedFusionRank, a novel approach to zero-shot medical information retrieval (MIR) that combines the strengths of pre-trained language models and statistical methods while addressing their limitations. The proposed approach leverages a pre-trained BERT-style model to extract compact yet informative keywords. These keywords are then enriched with domain knowledge by linking them to conceptual entities within a medical knowledge graph. Experimental evaluations on medical datasets demonstrate MedFusion Rank's superior performance over existing methods, with promising results with a variety of evaluation metrics. MedFusionRank demonstrates efficacy in retrieving relevant information, even from short or single-term queries.
The construction of large open knowledge bases (OKBs) is integral to many applications in the field of mobile computing. Noun phrases and relational phrases in OKBs often suffer from redundancy and ambiguity, which calls for the investigation on OKB canonicalization. However, in order to meet the requirements of some privacy protection regulations and to ensure the timeliness of the data, the canonicalized OKB often needs to remove some sensitive information or outdated data. The machine unlearning in OKB canonicalization is an excellent solution to the above problem. Current solutions address OKB canonicalization by devising advanced clustering algorithms and using knowledge graph embedding (KGE) to further facilitate the canonicalization process. Effective schemes are urgently needed to fully synergise machine unlearning with clustering and KGE learning. To this end, we put forward a multi-task unlearning framework, namely MulCanon, to tackle machine unlearning problem in OKB canonicalization. Specifically, the noise characteristics in the diffusion model are utilized to achieve the effect of machine unlearning for data in OKB. MulCanon unifies the learning objectives of diffusion model, KGE and clustering algorithms, and adopts a two-step multi-task learning paradigm for training. A thorough experimental study on popular OKB canonicalization datasets validates that MulCanon achieves advanced machine unlearning effects.
A variety of knowledge graph embedding approaches have been developed. Most of them obtain embeddings by learning the structure of the knowledge graph within a link prediction setting. As a result, the embeddings reflect only the structure of a single knowledge graph, and embeddings for different knowledge graphs are not aligned, e.g., they cannot be used to find similar entities across knowledge graphs via nearest neighbor search. However, knowledge graph embedding applications such as entity disambiguation require a more global representation, i.e., a representation that is valid across multiple sources. We propose to learn universal knowledge graph embeddings from large-scale interlinked knowledge sources. To this end, we fuse large knowledge graphs based on the owl:sameAs relation such that every entity is represented by a unique identity. We instantiate our idea by computing universal embeddings based on DBpedia and Wikidata yielding embeddings for about 180 million entities, 15 thousand relations, and 1.2 billion triples. We believe our computed embeddings will support the emerging field of graph foundation models. Moreover, we develop a convenient API to provide embeddings as a service. Experiments on link prediction suggest that universal knowledge graph embeddings encode better semantics compared to embeddings computed on a single knowledge graph. For reproducibility purposes, we provide our source code and datasets open access.
Graph data structures are widely used to store relational information between several entities. With data being generated worldwide on a large scale, we see a significant growth in the generation of knowledge graphs. Thing in the future is Orange's take on a knowledge graph in the domain of the Web Of Things (WoT), where the main objective of the platform is to provide a digital representation of the physical world and enable cross-domain applications to be built upon this massive and highly connected graph of things. In this context, as the knowledge graph grows in size, it is prone to have noisy and messy data. In this paper, we explore state-of-the-art knowledge graph embedding (KGE) methods to learn numerical representations of the graph entities and, subsequently, explore downstream tasks like link prediction, node classification, and triple classification. We also investigate Graph neural networks (GNN) alongside KGEs and compare their performance on the same downstream tasks. Our evaluation highlights the encouraging performance of both KGE and GNN-based methods on node classification, and the superiority of GNN approaches in the link prediction task. Overall, we show that state-of-the-art approaches are relevant in a WoT context, and this preliminary work provides insights to implement and evaluate them in this context.