We show that both an LSTM and a unitary-evolution recurrent neural network (URN) can achieve encouraging accuracy on two types of syntactic patterns: context-free long distance agreement, and mildly context-sensitive cross serial dependencies. This work extends recent experiments on deeply nested context-free long distance dependencies, with similar results. URNs differ from LSTMs in that they avoid non-linear activation functions, and they apply matrix multiplication to word embeddings encoded as unitary matrices. This permits them to retain all information in the processing of an input string over arbitrary distances. It also causes them to satisfy strict compositionality. URNs constitute a significant advance in the search for explainable models in deep learning applied to NLP.
The idea that discourse relations are construed through explicit content and shared, or implicit, knowledge between producer and interpreter is ubiquitous in discourse research and linguistics. However, the actual contribution of the lexical semantics of arguments is unclear. We propose a computational approach to the analysis of contrast and concession relations in the PDTB corpus. Our work sheds light on the extent to which lexical semantics contributes to signaling explicit and implicit discourse relations and clarifies the contribution of different parts of speech in both. This study contributes to bridging the gap between corpus linguistics and computational linguistics by proposing transparent and explainable models of discourse relations based on the synonymy and antonymy of their arguments.
The diversity and Zipfian frequency distribution of natural language predicates in corpora leads to sparsity in Entailment Graphs (EGs) built by Open Relation Extraction (ORE). EGs are computationally efficient and explainable models of natural language inference, but as symbolic models, they fail if a novel premise or hypothesis vertex is missing at test-time. We present theory and methodology for overcoming such sparsity in symbolic models. First, we introduce a theory of optimal smoothing of EGs by constructing transitive chains. We then demonstrate an efficient, open-domain, and unsupervised smoothing method using an off-the-shelf Language Model to find approximations of missing premise predicates. This improves recall by 25.1 and 16.3 percentage points on two difficult directional entailment datasets, while raising average precision and maintaining model explainability. Further, in a QA task we show that EG smoothing is most useful for answering questions with lesser supporting text, where missing premise predicates are more costly. Finally, controlled experiments with WordNet confirm our theory and show that hypothesis smoothing is difficult, but possible in principle.
Traditional datasets for the radiological diagnosis tend to only provide the radiology image alongside the radiology report. However, radiology reading as performed by radiologists is a complex process, and information such as the radiologist's eye-fixations over the course of the reading has the potential to be an invaluable data source to learn from. Nonetheless, the collection of such data is expensive and time-consuming. This leads to the question of whether such data is worth the investment to collect. This paper utilizes the recently published Eye-Gaze dataset to perform an exhaustive study on the impact on performance and explainability of deep learning (DL) classification in the face of varying levels of input features, namely: radiology images, radiology report text, and radiologist eye-gaze data. We find that the best classification performance of X-ray images is achieved with a combination of radiology report free-text and radiology image, with the eye-gaze data providing no performance boost. Nonetheless, eye-gaze data serving as secondary ground truth alongside the class label results in highly explainable models that generate better attention maps compared to models trained to do classification and attention map generation without eye-gaze data.
Data series classification is an important and challenging problem in data science. Explaining the classification decisions by finding the discriminant parts of the input that led the algorithm to some decisions is a real need in many applications. Convolutional neural networks perform well for the data series classification task; though, the explanations provided by this type of algorithm are poor for the specific case of multivariate data series. Addressing this important limitation is a significant challenge. In this paper, we propose a novel method that solves this problem by highlighting both the temporal and dimensional discriminant information. Our contribution is two-fold: we first describe a convolutional architecture that enables the comparison of dimensions; then, we propose a method that returns dCAM, a Dimension-wise Class Activation Map specifically designed for multivariate time series (and CNN-based models). Experiments with several synthetic and real datasets demonstrate that dCAM is not only more accurate than previous approaches, but the only viable solution for discriminant feature discovery and classification explanation in multivariate time series. This paper has appeared in SIGMOD'22.
Most deep learning algorithms lack explanations for their predictions, which limits their deployment in clinical practice. Approaches to improve explainability, especially in medical imaging, have often been shown to convey limited information, be overly reassuring, or lack robustness. In this work, we introduce the task of generating natural language explanations (NLEs) to justify predictions made on medical images. NLEs are human-friendly and comprehensive, and enable the training of intrinsically explainable models. To this goal, we introduce MIMIC-NLE, the first, large-scale, medical imaging dataset with NLEs. It contains over 38,000 NLEs, which explain the presence of various thoracic pathologies and chest X-ray findings. We propose a general approach to solve the task and evaluate several architectures on this dataset, including via clinician assessment.
Machine Learning has become an integral part of engineering design and decision making in several domains, including sports. Deep Neural Networks (DNNs) have been the state-of-the-art methods for predicting outcomes of professional sports events. However, apart from getting highly accurate predictions on these sports events outcomes, it is necessary to answer questions such as "Why did the model predict that Team A would win Match X against Team B?" DNNs are inherently black-box in nature. Therefore, it is required to provide high-quality interpretable, and understandable explanations for a model's prediction in sports. This paper explores a two-phased Explainable Artificial Intelligence(XAI) approach to predict outcomes of matches in the Brazilian volleyball League (SuperLiga). In the first phase, we directly use the interpretable rule-based ML models that provide a global understanding of the model's behaviors based on Boolean Rule Column Generation (BRCG; extracts simple AND-OR classification rules) and Logistic Regression (LogReg; allows to estimate the feature importance scores). In the second phase, we construct non-linear models such as Support Vector Machine (SVM) and Deep Neural Network (DNN) to obtain predictive performance on the volleyball matches' outcomes. We construct the "post-hoc" explanations for each data instance using ProtoDash, a method that finds prototypes in the training dataset that are most similar to the test instance, and SHAP, a method that estimates the contribution of each feature on the model's prediction. We evaluate the SHAP explanations using the faithfulness metric. Our results demonstrate the effectiveness of the explanations for the model's predictions.
Ensemble models (bagging and gradient-boosting) of relational decision trees have proved to be one of the most effective learning methods in the area of probabilistic logic models (PLMs). While effective, they lose one of the most important aspect of PLMs -- interpretability. In this paper we consider the problem of compressing a large set of learned trees into a single explainable model. To this effect, we propose CoTE -- Compression of Tree Ensembles -- that produces a single small decision list as a compressed representation. CoTE first converts the trees to decision lists and then performs the combination and compression with the aid of the original training set. An experimental evaluation demonstrates the effectiveness of CoTE in several benchmark relational data sets.
In vision-language retrieval systems, users provide natural language feedback to find target images. Vision-language explanations in the systems can better guide users to provide feedback and thus improve the retrieval. However, developing explainable vision-language retrieval systems can be challenging, due to limited labeled multimodal data. In the retrieval of complex scenes, the issue of limited labeled data can be more severe. With multiple objects in the complex scenes, each user query may not exhaustively describe all objects in the desired image and thus more labeled queries are needed. The issue of limited labeled data can cause data selection biases, and result in spurious correlations learned by the models. When learning spurious correlations, existing explainable models may not be able to accurately extract regions from images and keywords from user queries. In this paper, we discover that deconfounded learning is an important step to provide better vision-language explanations. Thus we propose a deconfounded explainable vision-language retrieval system. By introducing deconfounded learning to pretrain our vision-language model, the spurious correlations in the model can be reduced through interventions by potential confounders. This helps to train more accurate representations and further enable better explainability. Based on explainable retrieval results, we propose novel interactive mechanisms. In such interactions, users can better understand why the system returns particular results and give feedback effectively improving the results. This additional feedback is sample efficient and thus alleviates the data limitation problem. Through extensive experiments, our system achieves about 60% improvements, compared to the state-of-the-art.
Visualization of Machine Learning (ML) models is an important part of the ML process to enhance the interpretability and prediction accuracy of the ML models. This paper proposes a new method SPC-DT to visualize the Decision Tree (DT) as interpretable models. These methods use a version of General Line Coordinates called Shifted Paired Coordinates (SPC). In SPC, each n-D point is visualized in a set of shifted pairs of 2-D Cartesian coordinates as a directed graph. The new method expands and complements the capabilities of existing methods, to visualize DT models. It shows: (1) relations between attributes, (2) individual cases relative to the DT structure, (3) data flow in the DT, (4) how tight each split is to thresholds in the DT nodes, and (5) the density of cases in parts of the n-D space. This information is important for domain experts for evaluating and improving the DT models, including avoiding overgeneralization and overfitting of models, along with their performance. The benefits of the methods are demonstrated in the case studies, using three real datasets.
Concept-based explanations aims to fill the model interpretability gap for non-technical humans-in-the-loop. Previous work has focused on providing concepts for specific models (eg, neural networks) or data types (eg, images), and by either trying to extract concepts from an already trained network or training self-explainable models through multi-task learning. In this work, we propose ConceptDistil, a method to bring concept explanations to any black-box classifier using knowledge distillation. ConceptDistil is decomposed into two components:(1) a concept model that predicts which domain concepts are present in a given instance, and (2) a distillation model that tries to mimic the predictions of a black-box model using the concept model predictions. We validate ConceptDistil in a real world use-case, showing that it is able to optimize both tasks, bringing concept-explainability to any black-box model.
Existing explainable recommender systems have mainly modeled relationships between recommended and already experienced products, and shaped explanation types accordingly (e.g., movie "x" starred by actress "y" recommended to a user because that user watched other movies with "y" as an actress). However, none of these systems has investigated the extent to which properties of a single explanation (e.g., the recency of interaction with that actress) and of a group of explanations for a recommended list (e.g., the diversity of the explanation types) can influence the perceived explaination quality. In this paper, we conceptualized three novel properties that model the quality of the explanations (linking interaction recency, shared entity popularity, and explanation type diversity) and proposed re-ranking approaches able to optimize for these properties. Experiments on two public data sets showed that our approaches can increase explanation quality according to the proposed properties, fairly across demographic groups, while preserving recommendation utility. The source code and data are available at https://github.com/giacoballoccu/explanation-quality-recsys.
Defining a representative locality is an urgent challenge in perturbation-based explanation methods, which influences the fidelity and soundness of explanations. We address this issue by proposing a robust and intuitive approach for EXPLaining black-box classifiers using Adaptive Neighborhood generation (EXPLAN). EXPLAN is a module-based algorithm consisted of dense data generation, representative data selection, data balancing, and rule-based interpretable model. It takes into account the adjacency information derived from the black-box decision function and the structure of the data for creating a representative neighborhood for the instance being explained. As a local model-agnostic explanation method, EXPLAN generates explanations in the form of logical rules that are highly interpretable and well-suited for qualitative analysis of the model's behavior. We discuss fidelity-interpretability trade-offs and demonstrate the performance of the proposed algorithm by a comprehensive comparison with state-of-the-art explanation methods LIME, LORE, and Anchor. The conducted experiments on real-world data sets show our method achieves solid empirical results in terms of fidelity, precision, and stability of explanations.
Research studies have shown no qualms about using data driven deep learning models for downstream tasks in medical image analysis, e.g., anatomy segmentation and lesion detection, disease diagnosis and prognosis, and treatment planning. However, deep learning models are not the sovereign remedy for medical image analysis when the upstream imaging is not being conducted properly (with artefacts). This has been manifested in MRI studies, where the scanning is typically slow, prone to motion artefacts, with a relatively low signal to noise ratio, and poor spatial and/or temporal resolution. Recent studies have witnessed substantial growth in the development of deep learning techniques for propelling fast MRI. This article aims to (1) introduce the deep learning based data driven techniques for fast MRI including convolutional neural network and generative adversarial network based methods, (2) survey the attention and transformer based models for speeding up MRI reconstruction, and (3) detail the research in coupling physics and data driven models for MRI acceleration. Finally, we will demonstrate through a few clinical applications, explain the importance of data harmonisation and explainable models for such fast MRI techniques in multicentre and multi-scanner studies, and discuss common pitfalls in current research and recommendations for future research directions.
Recent advances in NLP and information retrieval have given rise to a diverse set of question answering tasks that are of different formats (e.g., extractive, abstractive), require different model architectures (e.g., generative, discriminative), and setups (e.g., with or without retrieval). Despite having a large number of powerful, specialized QA pipelines (which we refer to as Skills) that consider a single domain, model or setup, there exists no framework where users can easily explore and compare such pipelines and can extend them according to their needs. To address this issue, we present UKP-SQUARE, an extensible online QA platform for researchers which allows users to query and analyze a large collection of modern Skills via a user-friendly web interface and integrated behavioural tests. In addition, QA researchers can develop, manage, and share their custom Skills using our microservices that support a wide range of models (Transformers, Adapters, ONNX), datastores and retrieval techniques (e.g., sparse and dense). UKP-SQUARE is available on https://square.ukp-lab.de.
Nuclear segmentation, classification and quantification within Haematoxylin & Eosin stained histology images enables the extraction of interpretable cell-based features that can be used in downstream explainable models in computational pathology (CPath). However, automatic recognition of different nuclei is faced with a major challenge in that there are several different types of nuclei, some of them exhibiting large intraclass variability. In this work, we propose an approach that combine Separable-HoverNet and Instance-YOLOv5 to indentify colon nuclei small and unbalanced. Our approach can achieve mPQ+ 0.389 on the Segmentation and Classification-Preliminary Test Dataset and r2 0.599 on the Cellular Composition-Preliminary Test Dataset on ISBI 2022 CoNIC Challenge.
The recent surge in performance for image analysis of digitised pathology slides can largely be attributed to the advances in deep learning. Deep models can be used to initially localise various structures in the tissue and hence facilitate the extraction of interpretable features for biomarker discovery. However, these models are typically trained for a single task and therefore scale poorly as we wish to adapt the model for an increasing number of different tasks. Also, supervised deep learning models are very data hungry and therefore rely on large amounts of training data to perform well. In this paper, we present a multi-task learning approach for segmentation and classification of nuclei, glands, lumina and different tissue regions that leverages data from multiple independent data sources. While ensuring that our tasks are aligned by the same tissue type and resolution, we enable meaningful simultaneous prediction with a single network. As a result of feature sharing, we also show that the learned representation can be used to improve the performance of additional tasks via transfer learning, including nuclear classification and signet ring cell detection. As part of this work, we train our developed Cerberus model on a huge amount of data, consisting of over 600K objects for segmentation and 440K patches for classification. We use our approach to process 599 colorectal whole-slide images from TCGA, where we localise 377 million, 900K and 2.1 million nuclei, glands and lumina, respectively and make the results available to the community for downstream analysis.
Nuclear segmentation, classification and quantification within Haematoxylin & Eosin stained histology images enables the extraction of interpretable cell-based features that can be used in downstream explainable models in computational pathology. The Colon Nuclei Identification and Counting (CoNIC) Challenge is held to help drive forward research and innovation for automatic nuclei recognition in computational pathology. This report describes our proposed method submitted to the CoNIC challenge. Our method employs a multi-task learning framework, which performs a panoptic segmentation task and a regression task. For the panoptic segmentation task, we use encoder-decoder type deep neural networks predicting a direction map in addition to a segmentation map in order to separate neighboring nuclei into different instances
Existing methods for explaining black box learning models often focus on building local explanations of model behaviour for a particular data item. It is possible to create global explanations for all data items, but these explanations generally have low fidelity for complex black box models. We propose a new supervised manifold visualisation method, SLISEMAP, that simultaneously finds local explanations for all data items and builds a (typically) two-dimensional global visualisation of the black box model such that data items with similar local explanations are projected nearby. We provide a mathematical derivation of our problem and an open source implementation implemented using the GPU-optimised PyTorch library. We compare SLISEMAP to multiple popular dimensionality reduction methods and find that SLISEMAP is able to utilise labelled data to create embeddings with consistent local white box models. We also compare SLISEMAP to other model-agnostic local explanation methods and show that SLISEMAP provides comparable explanations and that the visualisations can give a broader understanding of black box regression and classification models.
Nuclear segmentation, classification and quantification within Haematoxylin & Eosin stained histology images enables the extraction of interpretable cell-based features that can be used in downstream explainable models in computational pathology (CPath). However, automatic recognition of different nuclei is faced with a major challenge in that there are several different types of nuclei, some of them exhibiting large intra-class variability. To help drive forward research and innovation for automatic nuclei recognition in CPath, we organise the Colon Nuclei Identification and Counting (CoNIC) Challenge. The challenge encourages researchers to develop algorithms that perform segmentation, classification and counting of nuclei within the current largest known publicly available nuclei-level dataset in CPath, containing around half a million labelled nuclei. Therefore, the CoNIC challenge utilises over 10 times the number of nuclei as the previous largest challenge dataset for nuclei recognition. It is important for algorithms to be robust to input variation if we wish to deploy them in a clinical setting. Therefore, as part of this challenge we will also test the sensitivity of each submitted algorithm to certain input variations.