Graphs are pervasive in the real-world, such as social network analysis, bioinformatics, and knowledge graphs. Graph neural networks (GNNs) have great ability in node classification, a fundamental task on graphs. Unfortunately, conventional GNNs still face challenges in scenarios with few labeled nodes, despite the prevalence of few-shot node classification tasks in real-world applications. To address this challenge, various approaches have been proposed, including graph meta-learning, transfer learning, and methods based on Large Language Models (LLMs). However, traditional meta-learning and transfer learning methods often require prior knowledge from base classes or fail to exploit the potential advantages of unlabeled nodes. Meanwhile, LLM-based methods may overlook the zero-shot capabilities of LLMs and rely heavily on the quality of generated contexts. In this paper, we propose a novel approach that integrates LLMs and GNNs, leveraging the zero-shot inference and reasoning capabilities of LLMs and employing a Graph-LLM-based active learning paradigm to enhance GNNs' performance. Extensive experiments demonstrate the effectiveness of our model in improving node classification accuracy with considerably limited labeled data, surpassing state-of-the-art baselines by significant margins.
Despite advancements in drug development strategies, 90% of clinical trials fail. This suggests overlooked aspects in target validation and drug optimization. In order to address this, we introduce HeCiX-KG, Hetionet-Clinicaltrials neXus Knowledge Graph, a novel fusion of data from ClinicalTrials.gov and Hetionet in a single knowledge graph. HeCiX-KG combines data on previously conducted clinical trials from ClinicalTrials.gov, and domain expertise on diseases and genes from Hetionet. This offers a thorough resource for clinical researchers. Further, we introduce HeCiX, a system that uses LangChain to integrate HeCiX-KG with GPT-4, and increase its usability. HeCiX shows high performance during evaluation against a range of clinically relevant issues, proving this model to be promising for enhancing the effectiveness of clinical research. Thus, this approach provides a more holistic view of clinical trials and existing biological data.
Large Language Models (LLMs) are proficient at generating coherent and contextually relevant text but face challenges when addressing knowledge-intensive queries in domain-specific and factual question-answering tasks. Retrieval-augmented generation (RAG) systems mitigate this by incorporating external knowledge sources, such as structured knowledge graphs (KGs). However, LLMs often struggle to produce accurate answers despite access to KG-extracted information containing necessary facts. Our study investigates this dilemma by analyzing error patterns in existing KG-based RAG methods and identifying eight critical failure points. We observed that these errors predominantly occur due to insufficient focus on discerning the question's intent and adequately gathering relevant context from the knowledge graph facts. Drawing on this analysis, we propose the Mindful-RAG approach, a framework designed for intent-based and contextually aligned knowledge retrieval. This method explicitly targets the identified failures and offers improvements in the correctness and relevance of responses provided by LLMs, representing a significant step forward from existing methods.
Fine-tuning pre-trained language models (PLMs) has recently shown a potential to improve knowledge graph completion (KGC). However, most PLM-based methods focus solely on encoding textual information, neglecting the long-tailed nature of knowledge graphs and their various topological structures, e.g., subgraphs, shortest paths, and degrees. We claim that this is a major obstacle to achieving higher accuracy of PLMs for KGC. To this end, we propose a Subgraph-Aware Training framework for KGC (SATKGC) with two ideas: (i) subgraph-aware mini-batching to encourage hard negative sampling and to mitigate an imbalance in the frequency of entity occurrences during training, and (ii) new contrastive learning to focus more on harder in-batch negative triples and harder positive triples in terms of the structural properties of the knowledge graph. To the best of our knowledge, this is the first study to comprehensively incorporate the structural inductive bias of the knowledge graph into fine-tuning PLMs. Extensive experiments on three KGC benchmarks demonstrate the superiority of SATKGC. Our code is available.
Dynamic knowledge graphs (DKGs) are popular structures to express different types of connections between objects over time. They can also serve as an efficient mathematical tool to represent information extracted from complex unstructured data sources, such as text or images. Within financial applications, DKGs could be used to detect trends for strategic thematic investing, based on information obtained from financial news articles. In this work, we explore the properties of large language models (LLMs) as dynamic knowledge graph generators, proposing a novel open-source fine-tuned LLM for this purpose, called the Integrated Contextual Knowledge Graph Generator (ICKG). We use ICKG to produce a novel open-source DKG from a corpus of financial news articles, called FinDKG, and we propose an attention-based GNN architecture for analysing it, called KGTransformer. We test the performance of the proposed model on benchmark datasets and FinDKG, demonstrating superior performance on link prediction tasks. Additionally, we evaluate the performance of the KGTransformer on FinDKG for thematic investing, showing it can outperform existing thematic ETFs.
We focus on a conversational question answering task which combines the challenges of understanding questions in context and reasoning over evidence gathered from heterogeneous sources like text, knowledge graphs, tables, and infoboxes. Our method utilizes a graph structured representation to aggregate information about a question and its context (i.e., the conversation so far and evidence retrieved to find an answer), while also harnessing the reasoning and text generation capabilities of large language models (LLMs). Graph embeddings are directly injected into the LLM, bypassing the token embedding layers, and learned end-to-end by minimizing cross-entropy. Our model maintains a memory module to track and update past evidence, thus influencing the graph's structure, as the conversation evolves. Experimental results on the ConvMix benchmark(Christmann et al., 2022a) show that graph embeddings enhance the LLM's ability to reason, while the memory module provides robustness against noise and retrieval errors.
Retrieval-augmented generation (RAG) has improved large language models (LLMs) by using knowledge retrieval to overcome knowledge deficiencies. However, current RAG methods often fall short of ensuring the depth and completeness of retrieved information, which is necessary for complex reasoning tasks. In this work, we introduce Think-on-Graph 2.0 (ToG-2), a hybrid RAG framework that iteratively retrieves information from both unstructured and structured knowledge sources in a tight-coupling manner. Specifically, ToG-2 leverages knowledge graphs (KGs) to link documents via entities, facilitating deep and knowledge-guided context retrieval. Simultaneously, it utilizes documents as entity contexts to achieve precise and efficient graph retrieval. ToG-2 alternates between graph retrieval and context retrieval to search for in-depth clues relevant to the question, enabling LLMs to generate answers. We conduct a series of well-designed experiments to highlight the following advantages of ToG-2: 1) ToG-2 tightly couples the processes of context retrieval and graph retrieval, deepening context retrieval via the KG while enabling reliable graph retrieval based on contexts; 2) it achieves deep and faithful reasoning in LLMs through an iterative knowledge retrieval process of collaboration between contexts and the KG; and 3) ToG-2 is training-free and plug-and-play compatible with various LLMs. Extensive experiments demonstrate that ToG-2 achieves overall state-of-the-art (SOTA) performance on 6 out of 7 knowledge-intensive datasets with GPT-3.5, and can elevate the performance of smaller models (e.g., LLAMA-2-13B) to the level of GPT-3.5's direct reasoning. The source code is available on https://github.com/IDEA-FinAI/ToG-2.
Knowledge graphs (KGs) are crucial in the field of artificial intelligence and are widely applied in downstream tasks, such as enhancing Question Answering (QA) systems. The construction of KGs typically requires significant effort from domain experts. Recently, Large Language Models (LLMs) have been used for knowledge graph construction (KGC), however, most existing approaches focus on a local perspective, extracting knowledge triplets from individual sentences or documents. In this work, we introduce Graphusion, a zero-shot KGC framework from free text. The core fusion module provides a global view of triplets, incorporating entity merging, conflict resolution, and novel triplet discovery. We showcase how Graphusion could be applied to the natural language processing (NLP) domain and validate it in the educational scenario. Specifically, we introduce TutorQA, a new expert-verified benchmark for graph reasoning and QA, comprising six tasks and a total of 1,200 QA pairs. Our evaluation demonstrates that Graphusion surpasses supervised baselines by up to 10% in accuracy on link prediction. Additionally, it achieves average scores of 2.92 and 2.37 out of 3 in human evaluations for concept entity extraction and relation recognition, respectively.
Knowledge graphs (KGs) are widely acknowledged as incomplete, and new entities are constantly emerging in the real world. Inductive KG reasoning aims to predict missing facts for these new entities. Among existing models, graph neural networks (GNNs) based ones have shown promising performance for this task. However, they are still challenged by inefficient message propagation due to the distance and scalability issues. In this paper, we propose a new inductive KG reasoning model, MStar, by leveraging conditional message passing neural networks (C-MPNNs). Our key insight is to select multiple query-specific starting entities to expand the scope of progressive propagation. To propagate query-related messages to a farther area within limited steps, we subsequently design a highway layer to propagate information toward these selected starting entities. Moreover, we introduce a training strategy called LinkVerify to mitigate the impact of noisy training samples. Experimental results validate that MStar achieves superior performance compared with state-of-the-art models, especially for distant entities.
Query embedding approaches answer complex logical queries over incomplete knowledge graphs (KGs) by computing and operating on low-dimensional vector representations of entities, relations, and queries. However, current query embedding models heavily rely on excessively parameterized neural networks and cannot explain the knowledge learned from the graph. We propose a novel query embedding method, AConE, which explains the knowledge learned from the graph in the form of $SROI^-$ description logic axioms while being more parameter-efficient than most existing approaches. AConE associates queries to a $SROI^-$ description logic concept. Every $SROI^-$ concept is embedded as a cone in complex vector space, and each $SROI^-$ relation is embedded as a transformation that rotates and scales cones. We show theoretically that AConE can learn $SROI^-$ axioms, and defines an algebra whose operations correspond one to one to $SROI^-$ description logic concept constructs. Our empirical study on multiple query datasets shows that AConE achieves superior results over previous baselines with fewer parameters. Notably on the WN18RR dataset, AConE achieves significant improvement over baseline models. We provide comprehensive analyses showing that the capability to represent axioms positively impacts the results of query answering.
This article explores the convergence of connectionist and symbolic artificial intelligence (AI), from historical debates to contemporary advancements. Traditionally considered distinct paradigms, connectionist AI focuses on neural networks, while symbolic AI emphasizes symbolic representation and logic. Recent advancements in large language models (LLMs), exemplified by ChatGPT and GPT-4, highlight the potential of connectionist architectures in handling human language as a form of symbols. The study argues that LLM-empowered Autonomous Agents (LAAs) embody this paradigm convergence. By utilizing LLMs for text-based knowledge modeling and representation, LAAs integrate neuro-symbolic AI principles, showcasing enhanced reasoning and decision-making capabilities. Comparing LAAs with Knowledge Graphs within the neuro-symbolic AI theme highlights the unique strengths of LAAs in mimicking human-like reasoning processes, scaling effectively with large datasets, and leveraging in-context samples without explicit re-training. The research underscores promising avenues in neuro-vector-symbolic integration, instructional encoding, and implicit reasoning, aimed at further enhancing LAA capabilities. By exploring the progression of neuro-symbolic AI and proposing future research trajectories, this work advances the understanding and development of AI technologies.
Novice researchers often face difficulties in understanding a multitude of academic papers and grasping the fundamentals of a new research field. To solve such problems, the knowledge graph supporting research survey is gradually being developed. Existing keyword-based knowledge graphs make it difficult for researchers to deeply understand abstract concepts. Meanwhile, novice researchers may find it difficult to use ChatGPT effectively for research surveys due to their limited understanding of the research field. Without the ability to ask proficient questions that align with key concepts, obtaining desired and accurate answers from this large language model (LLM) could be inefficient. This study aims to help novice researchers by providing a fish-bone diagram that includes causal relationships, offering an overview of the research topic. The diagram is constructed using the issue ontology from academic papers, and it offers a broad, highly generalized perspective of the research field, based on relevance and logical factors. Furthermore, we evaluate the strengths and improvable points of the fish-bone diagram derived from this study's development pattern, emphasizing its potential as a viable tool for supporting research survey.
Similarity search is a fundamental task for exploiting information in various applications dealing with graph data, such as citation networks or knowledge graphs. While this task has been intensively approached from heuristics to graph embeddings and graph neural networks (GNNs), providing explanations for similarity has received less attention. In this work we are concerned with explainable similarity search over graphs, by investigating how GNN-based methods for computing node similarities can be augmented with explanations. Specifically, we evaluate the performance of two prominent approaches towards explanations in GNNs, based on the concepts of mutual information (MI), and gradient-based explanations (GB). We discuss their suitability and empirically validate the properties of their explanations over different popular graph benchmarks. We find that unlike MI explanations, gradient-based explanations have three desirable properties. First, they are actionable: selecting inputs depending on them results in predictable changes in similarity scores. Second, they are consistent: the effect of selecting certain inputs overlaps very little with the effect of discarding them. Third, they can be pruned significantly to obtain sparse explanations that retain the effect on similarity scores.
In recent years, Natural Language Processing (NLP) has played a significant role in various Artificial Intelligence (AI) applications such as chatbots, text generation, and language translation. The emergence of large language models (LLMs) has greatly improved the performance of these applications, showing astonishing results in language understanding and generation. However, they still show some disadvantages, such as hallucinations and lack of domain-specific knowledge, that affect their performance in real-world tasks. These issues can be effectively mitigated by incorporating knowledge graphs (KGs), which organise information in structured formats that capture relationships between entities in a versatile and interpretable fashion. Likewise, the construction and validation of KGs present challenges that LLMs can help resolve. The complementary relationship between LLMs and KGs has led to a trend that combines these technologies to achieve trustworthy results. This work collected 28 papers outlining methods for KG-powered LLMs, LLM-based KGs, and LLM-KG hybrid approaches. We systematically analysed and compared these approaches to provide a comprehensive overview highlighting key trends, innovative techniques, and common challenges. This synthesis will benefit researchers new to the field and those seeking to deepen their understanding of how KGs and LLMs can be effectively combined to enhance AI applications capabilities.
Tackling the problem of learning probabilistic classifiers from incomplete data in the context of Knowledge Graphs expressed in Description Logics, we describe an inductive approach based on learning simple belief networks. Specifically, we consider a basic probabilistic model, a Naive Bayes classifier, based on multivariate Bernoullis and its extension to a two-tier network in which this classification model is connected to a lower layer consisting of a mixture of Bernoullis. We show how such models can be converted into (probabilistic) axioms (or rules) thus ensuring more interpretability. Moreover they may be also initialized exploiting expert knowledge. We present and discuss the outcomes of an empirical evaluation which aimed at testing the effectiveness of the models on a number of random classification problems with different ontologies.
Knowledge Graph Question Answering (KGQA) simplifies querying vast amounts of knowledge stored in a graph-based model using natural language. However, the research has largely concentrated on English, putting non-English speakers at a disadvantage. Meanwhile, existing multilingual KGQA systems face challenges in achieving performance comparable to English systems, highlighting the difficulty of generating SPARQL queries from diverse languages. In this research, we propose a simplified approach to enhance multilingual KGQA systems by incorporating linguistic context and entity information directly into the processing pipeline of a language model. Unlike existing methods that rely on separate encoders for integrating auxiliary information, our strategy leverages a single, pretrained multilingual transformer-based language model to manage both the primary input and the auxiliary data. Our methodology significantly improves the language model's ability to accurately convert a natural language query into a relevant SPARQL query. It demonstrates promising results on the most recent QALD datasets, namely QALD-9-Plus and QALD-10. Furthermore, we introduce and evaluate our approach on Chinese and Japanese, thereby expanding the language diversity of the existing datasets.
Recent studies have demonstrated that large language models (LLMs) are susceptible to being misled by false premise questions (FPQs), leading to errors in factual knowledge, know as factuality hallucination. Existing benchmarks that assess this vulnerability primarily rely on manual construction, resulting in limited scale and lack of scalability. In this work, we introduce an automated, scalable pipeline to create FPQs based on knowledge graphs (KGs). The first step is modifying true triplets extracted from KGs to create false premises. Subsequently, utilizing the state-of-the-art capabilities of GPTs, we generate semantically rich FPQs. Based on the proposed method, we present a comprehensive benchmark, the Knowledge Graph-based False Premise Questions (KG-FPQ), which contains approximately 178k FPQs across three knowledge domains, at six levels of confusability, and in two task formats. Using KG-FPQ, we conduct extensive evaluations on several representative LLMs and provide valuable insights. The KG-FPQ dataset and code are available at~https://github.com/yanxuzhu/KG-FPQ.
Continual Knowledge Graph Embedding (CKGE) aims to efficiently learn new knowledge and simultaneously preserve old knowledge. Dominant approaches primarily focus on alleviating catastrophic forgetting of old knowledge but neglect efficient learning for the emergence of new knowledge. However, in real-world scenarios, knowledge graphs (KGs) are continuously growing, which brings a significant challenge to fine-tuning KGE models efficiently. To address this issue, we propose a fast CKGE framework (\model), incorporating an incremental low-rank adapter (\mec) mechanism to efficiently acquire new knowledge while preserving old knowledge. Specifically, to mitigate catastrophic forgetting, \model\ isolates and allocates new knowledge to specific layers based on the fine-grained influence between old and new KGs. Subsequently, to accelerate fine-tuning, \model\ devises an efficient \mec\ mechanism, which embeds the specific layers into incremental low-rank adapters with fewer training parameters. Moreover, \mec\ introduces adaptive rank allocation, which makes the LoRA aware of the importance of entities and adjusts its rank scale adaptively. We conduct experiments on four public datasets and two new datasets with a larger initial scale. Experimental results demonstrate that \model\ can reduce training time by 34\%-49\% while still achieving competitive link prediction performance against state-of-the-art models on four public datasets (average MRR score of 21.0\% vs. 21.1\%).Meanwhile, on two newly constructed datasets, \model\ saves 51\%-68\% training time and improves link prediction performance by 1.5\%.
Knowledge Graphs (KGs) are fundamental resources in knowledge-intensive tasks in NLP. Due to the limitation of manually creating KGs, KG Completion (KGC) has an important role in automatically completing KGs by scoring their links with KG Embedding (KGE). To handle many entities in training, KGE relies on Negative Sampling (NS) loss that can reduce the computational cost by sampling. Since the appearance frequencies for each link are at most one in KGs, sparsity is an essential and inevitable problem. The NS loss is no exception. As a solution, the NS loss in KGE relies on smoothing methods like Self-Adversarial Negative Sampling (SANS) and subsampling. However, it is uncertain what kind of smoothing method is suitable for this purpose due to the lack of theoretical understanding. This paper provides theoretical interpretations of the smoothing methods for the NS loss in KGE and induces a new NS loss, Triplet Adaptive Negative Sampling (TANS), that can cover the characteristics of the conventional smoothing methods. Experimental results of TransE, DistMult, ComplEx, RotatE, HAKE, and HousE on FB15k-237, WN18RR, and YAGO3-10 datasets and their sparser subsets show the soundness of our interpretation and performance improvement by our TANS.
Knowledge graph (KG) reasoning is a task that aims to predict unknown facts based on known factual samples. Reasoning methods can be divided into two categories: rule-based methods and KG-embedding based methods. The former possesses precise reasoning capabilities but finds it challenging to reason efficiently over large-scale knowledge graphs. While gaining the ability to reason over large-scale knowledge graphs, the latter sacrifices reasoning accuracy. This paper aims to design a reasoning framework called Neural Probabilistic Logic Learning(NPLL) that achieves accurate reasoning on knowledge graphs. Our approach introduces a scoring module that effectively enhances the expressive power of embedding networks, striking a balance between model simplicity and reasoning capabilities. We improve the interpretability of the model by incorporating a Markov Logic Network based on variational inference. We empirically evaluate our approach on several benchmark datasets, and the experimental results validate that our method substantially enhances the accuracy and quality of the reasoning results.