Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art performance has significant room for improvement. Methods: We studied several variants of BERT (Bidirectional Encoder Representations using Transformers) some involving clinical domain customization and the others involving improved architecture and/or training strategies. We evaluated these methods using a direct temporal relations dataset which is a semantically focused subset of the 2012 i2b2 temporal relations challenge dataset. Results: Our results show that RoBERTa, which employs better pre-training strategies including using 10x larger corpus, has improved overall F measure by 0.0864 absolute score (on the 1.00 scale) and thus reducing the error rate by 24% relative to the previous state-of-the-art performance achieved with an SVM (support vector machine) model. Conclusion: Modern contextual language modeling neural networks, pre-trained on a large corpus, achieve impressive performance even on highly-nuanced clinical temporal relation tasks.
We propose a novel deep structured learning framework for event temporal relation extraction. The model consists of 1) a recurrent neural network (RNN) to learn scoring functions for pair-wise relations, and 2) a structured support vector machine (SSVM) to make joint predictions. The neural network automatically learns representations that account for long-term contexts to provide robust features for the structured model, while the SSVM incorporates domain knowledge such as transitive closure of temporal relations as constraints to make better globally consistent decisions. By jointly training the two components, our model combines the benefits of both data-driven learning and knowledge exploitation. Experimental results on three high-quality event temporal relation datasets (TCR, MATRES, and TB-Dense) demonstrate that incorporated with pre-trained contextualized embeddings, the proposed model achieves significantly better performances than the state-of-the-art methods on all three datasets. We also provide thorough ablation studies to investigate our model.
We propose a joint event and temporal relation extraction model with shared representation learning and structured prediction. The proposed method has two advantages over existing work. First, it improves event representation by allowing the event and relation modules to share the same contextualized embeddings and neural representation learner. Second, it avoids error propagation in the conventional pipeline systems by leveraging structured inference and learning methods to assign both the event labels and the temporal relation labels jointly. Experiments show that the proposed method can improve both event extraction and temporal relation extraction over state-of-the-art systems, with the end-to-end F1 improved by 10% and 6.8% on two benchmark datasets respectively.
Determining temporal relations (e.g., before or after) between events has been a challenging natural language understanding task, partly due to the difficulty to generate large amounts of high-quality training data. Consequently, neural approaches have not been widely used on it, or showed only moderate improvements. This paper proposes a new neural system that achieves about 10% absolute improvement in accuracy over the previous best system (25% error reduction) on two benchmark datasets. The proposed system is trained on the state-of-the-art MATRES dataset and applies contextualized word embeddings, a Siamese encoder of a temporal common sense knowledge base, and global inference via integer linear programming (ILP). We suggest that the new approach could serve as a strong baseline for future research in this area.
Despite great success has been achieved in activity analysis, it still has many challenges. Most existing work in activity recognition pay more attention to design efficient architecture or video sampling strategy. However, due to the property of fine-grained action and long term structure in video, activity recognition is expected to reason temporal relation between video sequences. In this paper, we propose an efficient temporal reasoning graph (TRG) to simultaneously capture the appearance features and temporal relation between video sequences at multiple time scales. Specifically, we construct learnable temporal relation graphs to explore temporal relation on the multi-scale range. Additionally, to facilitate multi-scale temporal relation extraction, we design a multi-head temporal adjacent matrix to represent multi-kinds of temporal relations. Eventually, a multi-head temporal relation aggregator is proposed to extract the semantic meaning of those features convolving through the graphs. Extensive experiments are performed on widely-used large-scale datasets, such as Something-Something and Charades, and the results show that our model can achieve state-of-the-art performance. Further analysis shows that temporal relation reasoning with our TRG can extract discriminative features for activity recognition.
A major obstacle to the development of Natural Language Processing (NLP) methods in the biomedical domain is data accessibility. This problem can be addressed by generating medical data artificially. Most previous studies have focused on the generation of short clinical text, and evaluation of the data utility has been limited. We propose a generic methodology to guide the generation of clinical text with key phrases. We use the artificial data as additional training data in two key biomedical NLP tasks: text classification and temporal relation extraction. We show that artificially generated training data used in conjunction with real training data can lead to performance boosts for data-greedy neural network algorithms. We also demonstrate the usefulness of the generated data for NLP setups where it fully replaces real training data.
Identifying temporal relations between events is an essential step towards natural language understanding. However, the temporal relation between two events in a story depends on, and is often dictated by, relations among other events. Consequently, effectively identifying temporal relations between events is a challenging problem even for human annotators. This paper suggests that it is important to take these dependencies into account while learning to identify these relations and proposes a structured learning approach to address this challenge. As a byproduct, this provides a new perspective on handling missing relations, a known issue that hurts existing methods. As we show, the proposed approach results in significant improvements on the two commonly used data sets for this problem.
Learning causal and temporal relationships between events is an important step towards deeper story and commonsense understanding. Though there are abundant datasets annotated with event relations for story comprehension, many have no empirical results associated with them. In this work, we establish strong baselines for event temporal relation extraction on two under-explored story narrative datasets: Richer Event Description (RED) and Causal and Temporal Relation Scheme (CaTeRS). To the best of our knowledge, these are the first results reported on these two datasets. We demonstrate that neural network-based models can outperform some strong traditional linguistic feature-based models. We also conduct comparative studies to show the contribution of adopting contextualized word embeddings (BERT) for event temporal relation extraction from stories. Detailed analyses are offered to better understand the results.
We present a novel semantic framework for modeling temporal relations and event durations that maps pairs of events to real-valued scales. We use this framework to construct the largest temporal relations dataset to date, covering the entirety of the Universal Dependencies English Web Treebank. We use this dataset to train models for jointly predicting fine-grained temporal relations and event durations. We report strong results on our data and show the efficacy of a transfer-learning approach for predicting categorical relations.
Unsupervised pre-trained word embeddings are used effectively for many tasks in natural language processing to leverage unlabeled textual data. Often these embeddings are either used as initializations or as fixed word representations for task-specific classification models. In this work, we extend our classification model's task loss with an unsupervised auxiliary loss on the word-embedding level of the model. This is to ensure that the learned word representations contain both task-specific features, learned from the supervised loss component, and more general features learned from the unsupervised loss component. We evaluate our approach on the task of temporal relation extraction, in particular, narrative containment relation extraction from clinical records, and show that continued training of the embeddings on the unsupervised objective together with the task objective gives better task-specific embeddings, and results in an improvement over the state of the art on the THYME dataset, using only a general-domain part-of-speech tagger as linguistic resource.
Automatic extraction of temporal relations between event pairs is an important task for several natural language processing applications such as Question Answering, Information Extraction, and Summarization. Since most existing methods are supervised and require large corpora, which for many languages do not exist, we have concentrated our efforts to reduce the need for annotated data as much as possible. This paper presents two different algorithms towards this goal. The first algorithm is a weakly supervised machine learning approach for classification of temporal relations between events. In the first stage, the algorithm learns a general classifier from an annotated corpus. Then, inspired by the hypothesis of "one type of temporal relation per discourse, it extracts useful information from a cluster of topically related documents. We show that by combining the global information of such a cluster with local decisions of a general classifier, a bootstrapping cross-document classifier can be built to extract temporal relations between events. Our experiments show that without any additional annotated data, the accuracy of the proposed algorithm is higher than that of several previous successful systems. The second proposed method for temporal relation extraction is based on the expectation maximization (EM) algorithm. Within EM, we used different techniques such as a greedy best-first search and integer linear programming for temporal inconsistency removal. We think that the experimental results of our EM based algorithm, as a first step toward a fully unsupervised temporal relation extraction method, is encouraging.
We describe the TempEval-3 task which is currently in preparation for the SemEval-2013 evaluation exercise. The aim of TempEval is to advance research on temporal information processing. TempEval-3 follows on from previous TempEval events, incorporating: a three-part task structure covering event, temporal expression and temporal relation extraction; a larger dataset; and single overall task quality scores.
Building unified timelines from a collection of written news articles requires cross-document event coreference resolution and temporal relation extraction. In this paper we present an approach event coreference resolution according to: a) similar temporal information, and b) similar semantic arguments. Temporal information is detected using an automatic temporal information system (TIPSem), while semantic information is represented by means of LDA Topic Modeling. The evaluation of our approach shows that it obtains the highest Micro-average F-score results in the SemEval2015 Task 4: TimeLine: Cross-Document Event Ordering (25.36\% for TrackB, 23.15\% for SubtrackB), with an improvement of up to 6\% in comparison to the other systems. However, our experiment also showed some draw-backs in the Topic Modeling approach that degrades performance of the system.
Structured information resulting from temporal information processing is crucial for a variety of natural language processing tasks, for instance to generate timeline summarization of events from news documents, or to answer temporal/causal-related questions about some events. In this thesis we present a framework for an integrated temporal and causal relation extraction system. We first develop a robust extraction component for each type of relations, i.e. temporal order and causality. We then combine the two extraction components into an integrated relation extraction system, CATENA---CAusal and Temporal relation Extraction from NAtural language texts---, by utilizing the presumption about event precedence in causality, that causing events must happened BEFORE resulting events. Several resources and techniques to improve our relation extraction systems are also discussed, including word embeddings and training data expansion. Finally, we report our adaptation efforts of temporal information processing for languages other than English, namely Italian and Indonesian.
Extracting temporal relations (before, after, overlapping, etc.) is a key aspect of understanding events described in natural language. We argue that this task would gain from the availability of a resource that provides prior knowledge in the form of the temporal order that events usually follow. This paper develops such a resource -- a probabilistic knowledge base acquired in the news domain -- by extracting temporal relations between events from the New York Times (NYT) articles over a 20-year span (1987--2007). We show that existing temporal extraction systems can be improved via this resource. As a byproduct, we also show that interesting statistics can be retrieved from this resource, which can potentially benefit other time-aware tasks. The proposed system and resource are both publicly available.
Annotating temporal relations (TempRel) between events described in natural language is known to be labor intensive, partly because the total number of TempRels is quadratic in the number of events. As a result, only a small number of documents are typically annotated, limiting the coverage of various lexical/semantic phenomena. In order to improve existing approaches, one possibility is to make use of the readily available, partially annotated data (P as in partial) that cover more documents. However, missing annotations in P are known to hurt, rather than help, existing systems. This work is a case study in exploring various usages of P for TempRel extraction. Results show that despite missing annotations, P is still a useful supervision signal for this task within a constrained bootstrapping learning framework. The system described in this system is publicly available.