Large language models (LLMs) have demonstrated strong capabilities across various language tasks, notably through instruction-tuning methods. However, LLMs face challenges in visualizing complex, real-world data through charts and plots. Firstly, existing datasets rarely cover a full range of chart types, such as 3D, volumetric, and gridded charts. Secondly, supervised fine-tuning methods do not fully leverage the intricate relationships within rich datasets, including text, code, and figures. To address these challenges, we propose a hierarchical pipeline and a new dataset for chart generation. Our dataset, Text2Chart31, includes 31 unique plot types referring to the Matplotlib library, with 11.1K tuples of descriptions, code, data tables, and plots. Moreover, we introduce a reinforcement learning-based instruction tuning technique for chart generation tasks without requiring human feedback. Our experiments show that this approach significantly enhances the model performance, enabling smaller models to outperform larger open-source models and be comparable to state-of-the-art proprietary models in data visualization tasks. We make the code and dataset available at https://github.com/fatemehpesaran310/Text2Chart31.
Autonomous systems for software engineering are now capable of fixing bugs and developing features. These systems are commonly evaluated on SWE-bench (Jimenez et al., 2024a), which assesses their ability to solve software issues from GitHub repositories. However, SWE-bench uses only Python repositories, with problem statements presented predominantly as text and lacking visual elements such as images. This limited coverage motivates our inquiry into how existing systems might perform on unrepresented software engineering domains (e.g., front-end, game development, DevOps), which use different programming languages and paradigms. Therefore, we propose SWE-bench Multimodal (SWE-bench M), to evaluate systems on their ability to fix bugs in visual, user-facing JavaScript software. SWE-bench M features 617 task instances collected from 17 JavaScript libraries used for web interface design, diagramming, data visualization, syntax highlighting, and interactive mapping. Each SWE-bench M task instance contains at least one image in its problem statement or unit tests. Our analysis finds that top-performing SWE-bench systems struggle with SWE-bench M, revealing limitations in visual problem-solving and cross-language generalization. Lastly, we show that SWE-agent's flexible language-agnostic features enable it to substantially outperform alternatives on SWE-bench M, resolving 12% of task instances compared to 6% for the next best system.
Nonlinear data visualization using t-distributed stochastic neighbor embedding (t-SNE) enables the representation of complex single-cell transcriptomic landscapes in two or three dimensions to depict biological populations accurately. However, t-SNE often fails to account for uncertainties in the original dataset, leading to misleading visualizations where cell subsets with noise appear indistinguishable. To address these challenges, we introduce uncertainty-aware t-SNE (Ut-SNE), a noise-defending visualization tool tailored for uncertain single-cell RNA-seq data. By creating a probabilistic representation for each sample, Our Ut-SNE accurately incorporates noise about transcriptomic variability into the visual interpretation of single-cell RNA sequencing data, revealing significant uncertainties in transcriptomic variability. Through various examples, we showcase the practical value of Ut-SNE and underscore the significance of incorporating uncertainty awareness into data visualization practices. This versatile uncertainty-aware visualization tool can be easily adapted to other scientific domains beyond single-cell RNA sequencing, making them valuable resources for high-dimensional data analysis.
The Problem-oriented AutoML in Clustering (PoAC) framework introduces a novel, flexible approach to automating clustering tasks by addressing the shortcomings of traditional AutoML solutions. Conventional methods often rely on predefined internal Clustering Validity Indexes (CVIs) and static meta-features, limiting their adaptability and effectiveness across diverse clustering tasks. In contrast, PoAC establishes a dynamic connection between the clustering problem, CVIs, and meta-features, allowing users to customize these components based on the specific context and goals of their task. At its core, PoAC employs a surrogate model trained on a large meta-knowledge base of previous clustering datasets and solutions, enabling it to infer the quality of new clustering pipelines and synthesize optimal solutions for unseen datasets. Unlike many AutoML frameworks that are constrained by fixed evaluation metrics and algorithm sets, PoAC is algorithm-agnostic, adapting seamlessly to different clustering problems without requiring additional data or retraining. Experimental results demonstrate that PoAC not only outperforms state-of-the-art frameworks on a variety of datasets but also excels in specific tasks such as data visualization, and highlight its ability to dynamically adjust pipeline configurations based on dataset complexity.
In this paper, we conduct sentiment analysis on social media data to study mass opinion about offshore wind energy. We adapt three machine learning models, namely, TextBlob, VADER, and SentiWordNet because different functions are provided by each model. TextBlob provides subjectivity analysis as well as polarity classification. VADER offers cumulative sentiment scores. SentiWordNet considers sentiments with reference to context and performs classification accordingly. Techniques in NLP are harnessed to gather meaning from the textual data in social media. Data visualization tools are suitably deployed to display the overall results. This work is much in line with citizen science and smart governance via involvement of mass opinion to guide decision support. It exemplifies the role of Machine Learning and NLP here.
Imaging features of knee articular cartilage have been shown to be potential imaging biomarkers for knee osteoarthritis. Despite recent methodological advancements in image analysis techniques like image segmentation, registration, and domain-specific image computing algorithms, only a few works focus on building fully automated pipelines for imaging feature extraction. In this study, we developed a deep-learning-based medical image analysis application for knee cartilage morphometrics, CartiMorph Toolbox (CMT). We proposed a 2-stage joint template learning and registration network, CMT-reg. We trained the model using the OAI-ZIB dataset and assessed its performance in template-to-image registration. The CMT-reg demonstrated competitive results compared to other state-of-the-art models. We integrated the proposed model into an automated pipeline for the quantification of cartilage shape and lesion (full-thickness cartilage loss, specifically). The toolbox provides a comprehensive, user-friendly solution for medical image analysis and data visualization. The software and models are available at https://github.com/YongchengYAO/CMT-AMAI24paper .
This formative study investigates the impact of data quality on AI-assisted data visualizations, focusing on how uncleaned datasets influence the outcomes of these tools. By generating visualizations from datasets with inherent quality issues, the research aims to identify and categorize the specific visualization problems that arise. The study further explores potential methods and tools to address these visualization challenges efficiently and effectively. Although tool development has not yet been undertaken, the findings emphasize enhancing AI visualization tools to handle flawed data better. This research underscores the critical need for more robust, user-friendly solutions that facilitate quicker and easier correction of data and visualization errors, thereby improving the overall reliability and usability of AI-assisted data visualization processes.
The growing number of dimensionality reduction methods available for data visualization has recently inspired the development of quality assessment measures, in order to evaluate the resulting low-dimensional representation independently from a methods' inherent criteria. Several (existing) quality measures can be (re)formulated based on the so-called co-ranking matrix, which subsumes all rank errors (i.e. differences between the ranking of distances from every point to all others, comparing the low-dimensional representation to the original data). The measures are often based on the partioning of the co-ranking matrix into 4 submatrices, divided at the K-th row and column, calculating a weighted combination of the sums of each submatrix. Hence, the evaluation process typically involves plotting a graph over several (or even all possible) settings of the parameter K. Considering simple artificial examples, we argue that this parameter controls two notions at once, that need not necessarily be combined, and that the rectangular shape of submatrices is disadvantageous for an intuitive interpretation of the parameter. We debate that quality measures, as general and flexible evaluation tools, should have parameters with a direct and intuitive interpretation as to which specific error types are tolerated or penalized. Therefore, we propose to replace K with two parameters to control these notions separately, and introduce a differently shaped weighting on the co-ranking matrix. The two new parameters can then directly be interpreted as a threshold up to which rank errors are tolerated, and a threshold up to which the rank-distances are significant for the evaluation. Moreover, we propose a color representation of local quality to visually support the evaluation process for a given mapping, where every point in the mapping is colored according to its local contribution to the overall quality.
Sleep is crucial for human health, and EEG signals play a significant role in sleep research. Due to the high-dimensional nature of EEG signal data sequences, data visualization and clustering of different sleep stages have been challenges. To address these issues, we propose a two-stage hierarchical and explainable feature selection framework by incorporating a feature selection algorithm to improve the performance of dimensionality reduction. Inspired by topological data analysis, which can analyze the structure of high-dimensional data, we extract topological features from the EEG signals to compensate for the structural information loss that happens in traditional spectro-temporal data analysis. Supported by the topological visualization of the data from different sleep stages and the classification results, the proposed features are proven to be effective supplements to traditional features. Finally, we compare the performances of three dimensionality reduction algorithms: Principal Component Analysis (PCA), t-Distributed Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation and Projection (UMAP). Among them, t-SNE achieved the highest accuracy of 79.8%, but considering the overall performance in terms of computational resources and metrics, UMAP is the optimal choice.
Charts are widely used for data visualization across various fields, including education, research, and business. Chart Question Answering (CQA) is an emerging task focused on the automatic interpretation and reasoning of data presented in charts. However, chart images are inherently difficult to interpret, and chart-related questions often involve complex logical and numerical reasoning, which hinders the performance of existing models. This paper introduces VProChart, a novel framework designed to address these challenges in CQA by integrating a lightweight Visual Perception Alignment Agent (VPAgent) and a Programmatic Solution Reasoning approach. VPAgent aligns and models chart elements based on principles of human visual perception, enhancing the understanding of chart context. The Programmatic Solution Reasoning approach leverages large language models (LLMs) to transform natural language reasoning questions into structured solution programs, facilitating precise numerical and logical reasoning. Extensive experiments on benchmark datasets such as ChartQA and PlotQA demonstrate that VProChart significantly outperforms existing methods, highlighting its capability in understanding and reasoning with charts.
Data lakes are widely used to store extensive and heterogeneous datasets for advanced analytics. However, the unstructured nature of data in these repositories introduces complexities in exploiting them and extracting meaningful insights. This motivates the need of exploring efficient approaches for consolidating data lakes and deriving a common and unified schema. This paper introduces a practical data visualization and analysis approach rooted in Formal Concept Analysis (FCA) to systematically clean, organize, and design data structures within a data lake. We explore diverse data structures stored in our data lake at Infologic, including InfluxDB measurements and Elasticsearch indexes, aiming to derive conventions for a more accessible data model. Leveraging FCA, we represent data structures as objects, analyze the concept lattice, and present two strategies-top-down and bottom-up-to unify these structures and establish a common schema. Our methodology yields significant results, enabling the identification of common concepts in the data structures, such as resources along with their underlying shared fields (timestamp, type, usedRatio, etc.). Moreover, the number of distinct data structure field names is reduced by 54 percent (from 190 to 88) in the studied subset of our data lake. We achieve a complete coverage of 80 percent of data structures with only 34 distinct field names, a significant improvement from the initial 121 field names that were needed to reach such coverage. The paper provides insights into the Infologic ecosystem, problem formulation, exploration strategies, and presents both qualitative and quantitative results.
The widespread use of charts and infographics as a means of data visualization in various domains has inspired recent research in automated chart understanding. However, information extraction from chart images is a complex multitasked process due to style variations and, as a consequence, it is challenging to design an end-to-end system. In this study, we propose a deep learning-based framework that provides a solution for key steps in the chart information extraction pipeline. The proposed framework utilizes hierarchal vision transformers for the tasks of chart-type and text-role classification, while YOLOv7 for text detection. The detected text is then enhanced using Super Resolution Generative Adversarial Networks to improve the recognition output of the OCR. Experimental results on a benchmark dataset show that our proposed framework achieves excellent performance at every stage with F1-scores of 0.97 for chart-type classification, 0.91 for text-role classification, and a mean Average Precision of 0.95 for text detection.
This paper explores the intersection of data visualization and Large Language Models (LLMs). Driven by the need to make a broader range of data visualization types accessible for novice users, we present a guided LLM-based pipeline designed to transform data, guided by high-level user questions (referred to as macro-queries), into a diverse set of useful visualizations. This approach leverages various prompting techniques, fine-tuning inspired by Abela's Chart Taxonomy, and integrated SQL tool usage.
Data visualization (DV) is the fundamental and premise tool to improve the efficiency in conveying the insights behind the big data, which has been widely accepted in existing data-driven world. Task automation in DV, such as converting natural language queries to visualizations (i.e., text-to-vis), generating explanations from visualizations (i.e., vis-to-text), answering DV-related questions in free form (i.e. FeVisQA), and explicating tabular data (i.e., table-to-text), is vital for advancing the field. Despite their potential, the application of pre-trained language models (PLMs) like T5 and BERT in DV has been limited by high costs and challenges in handling cross-modal information, leading to few studies on PLMs for DV. We introduce DataVisT5, a novel PLM tailored for DV that enhances the T5 architecture through a hybrid objective pre-training and multi-task fine-tuning strategy, integrating text and DV datasets to effectively interpret cross-modal semantics. Extensive evaluations on public datasets show that DataVisT5 consistently outperforms current state-of-the-art models on various DV-related tasks. We anticipate that DataVisT5 will not only inspire further research on vertical PLMs but also expand the range of applications for PLMs.
Dimensionality reduction (DR) is a well-established approach for the visualization of high-dimensional data sets. While DR methods are often applied to typical DR benchmark data sets in the literature, they might suffer from high runtime complexity and memory requirements, making them unsuitable for large data visualization especially in environments outside of high-performance computing. To perform DR on large data sets, we propose the use of out-of-sample extensions. Such extensions allow inserting new data into existing projections, which we leverage to iteratively project data into a reference projection that consists only of a small manageable subset. This process makes it possible to perform DR out-of-core on large data, which would otherwise not be possible due to memory and runtime limitations. For metric multidimensional scaling (MDS), we contribute an implementation with out-of-sample projection capability since typical software libraries do not support it. We provide an evaluation of the projection quality of five common DR algorithms (MDS, PCA, t-SNE, UMAP, and autoencoders) using quality metrics from the literature and analyze the trade-off between the size of the reference set and projection quality. The runtime behavior of the algorithms is also quantified with respect to reference set size, out-of-sample batch size, and dimensionality of the data sets. Furthermore, we compare the out-of-sample approach to other recently introduced DR methods, such as PaCMAP and TriMAP, which claim to handle larger data sets than traditional approaches. To showcase the usefulness of DR on this large scale, we contribute a use case where we analyze ensembles of streamlines amounting to one billion projected instances.
The rapid evolution of software development necessitates enhanced safety measures. Extracting information about software failures from companies is becoming increasingly more available through news articles. This research utilizes the Failure Analysis Investigation with LLMs (FAIL) model to extract industry-specific information. Although the FAIL model's database is rich in information, it could benefit from further categorization and industry-specific insights to further assist software engineers. In previous work news articles were collected from reputable sources and categorized by incidents inside a database. Prompt engineering and Large Language Models (LLMs) were then applied to extract relevant information regarding the software failure. This research extends these methods by categorizing articles into specific domains and types of software failures. The results are visually represented through graphs. The analysis shows that throughout the database some software failures occur significantly more often in specific industries. This categorization provides a valuable resource for software engineers and companies to identify and address common failures. This research highlights the synergy between software engineering and Large Language Models (LLMs) to automate and enhance the analysis of software failures. By transforming data from the database into an industry specific model, we provide a valuable resource that can be used to identify common vulnerabilities, predict potential risks, and implement proactive measures for preventing software failures. Leveraging the power of the current FAIL database and data visualization, we aim to provide an avenue for safer and more secure software in the future.
We present factgenie: a framework for annotating and visualizing word spans in textual model outputs. Annotations can capture various span-based phenomena such as semantic inaccuracies or irrelevant text. With factgenie, the annotations can be collected both from human crowdworkers and large language models. Our framework consists of a web interface for data visualization and gathering text annotations, powered by an easily extensible codebase.
This work introduces IsUMap, a novel manifold learning technique that enhances data representation by integrating aspects of UMAP and Isomap with Vietoris-Rips filtrations. We present a systematic and detailed construction of a metric representation for locally distorted metric spaces that captures complex data structures more accurately than the previous schemes. Our approach addresses limitations in existing methods by accommodating non-uniform data distributions and intricate local geometries. We validate its performance through extensive experiments on examples of various geometric objects and benchmark real-world datasets, demonstrating significant improvements in representation quality.
The growing prevalence of high-dimensional data has fostered the development of multidimensional projection (MP) techniques, such as t-SNE, UMAP, and LAMP, for data visualization and exploration. However, conventional MP methods typically employ generic quality metrics, neglecting individual user preferences. This study proposes a new framework that tailors MP techniques based on user-specific quality criteria, enhancing projection interpretability. Our approach combines three visual quality metrics, stress, neighborhood preservation, and silhouette score, to create a composite metric for a precise MP evaluation. We then optimize the projection scale by maximizing the composite metric value. We conducted an experiment involving two users with different projection preferences, generating projections using t-SNE, UMAP, and LAMP. Users rate projections according to their criteria, producing two training sets. We derive optimal weights for each set and apply them to other datasets to determine the best projections per user. Our findings demonstrate that personalized projections effectively capture user preferences, fostering better data exploration and enabling more informed decision-making. This user-centric approach promotes advancements in multidimensional projection techniques that accommodate diverse user preferences and enhance interpretability.
The integration of Large Language Models (LLMs), especially ChatGPT, into education is poised to revolutionize students' learning experiences by introducing innovative conversational learning methodologies. To empower students to fully leverage the capabilities of ChatGPT in educational scenarios, understanding students' interaction patterns with ChatGPT is crucial for instructors. However, this endeavor is challenging due to the absence of datasets focused on student-ChatGPT conversations and the complexities in identifying and analyzing the evolutional interaction patterns within conversations. To address these challenges, we collected conversational data from 48 students interacting with ChatGPT in a master's level data visualization course over one semester. We then developed a coding scheme, grounded in the literature on cognitive levels and thematic analysis, to categorize students' interaction patterns with ChatGPT. Furthermore, we present a visual analytics system, StuGPTViz, that tracks and compares temporal patterns in student prompts and the quality of ChatGPT's responses at multiple scales, revealing significant pedagogical insights for instructors. We validated the system's effectiveness through expert interviews with six data visualization instructors and three case studies. The results confirmed StuGPTViz's capacity to enhance educators' insights into the pedagogical value of ChatGPT. We also discussed the potential research opportunities of applying visual analytics in education and developing AI-driven personalized learning solutions.