Fundus images are widely used for diagnosing various eye diseases, such as diabetic retinopathy, glaucoma, and age-related macular degeneration. However, manual analysis of fundus images is time-consuming and prone to errors. In this report, we propose a novel method for fundus detection using object detection and machine learning classification techniques. We use a YOLO_V8 to perform object detection on fundus images and locate the regions of interest (ROIs) such as optic disc, optic cup and lesions. We then use machine learning SVM classification algorithms to classify the ROIs into different DR stages based on the presence or absence of pathological signs such as exudates, microaneurysms, and haemorrhages etc. Our method achieves 84% accuracy and efficiency for fundus detection and can be applied for retinal fundus disease triage, especially in remote areas around the world.
Surprisingly a number of Earth's waterways remain unmapped, with a significant number in low and middle income countries. Here we build a computer vision model (WaterNet) to learn the location of waterways in the United States, based on high resolution satellite imagery and digital elevation models, and then deploy this in novel environments in the African continent. Our outputs provide detail of waterways structures hereto unmapped. When assessed against community needs requests for rural bridge building related to access to schools, health care facilities and agricultural markets, we find these newly generated waterways capture on average 93% (country range: 88-96%) of these requests whereas Open Street Map, and the state of the art data from TDX-Hydro, capture only 36% (5-72%) and 62% (37%-85%), respectively. Because these new machine learning enabled maps are built on public and operational data acquisition this approach offers promise for capturing humanitarian needs and planning for social development in places where cartographic efforts have so far failed to deliver. The improved performance in identifying community needs missed by existing data suggests significant value for rural infrastructure development and better targeting of development interventions.
This paper provides an empirical study explores the application of deep learning algorithms-Multilayer Perceptron (MLP), Convolutional Neural Networks (CNN), Long Short-Term Memory (LSTM), and Transformer-in constructing long-short stock portfolios. Two datasets comprising randomly selected stocks from the S&P500 and NASDAQ indices, each spanning a decade of daily data, are utilized. The models predict daily stock returns based on historical features such as past returns,Relative Strength Index (RSI), trading volume, and volatility. Portfolios are dynamically adjusted by longing stocks with positive predicted returns and shorting those with negative predictions, with equal asset weights. Performance is evaluated over a two-year testing period, focusing on return, Sharpe ratio, and maximum drawdown metrics. The results demonstrate the efficacy of deep learning models in enhancing long-short stock portfolio performance.
Medical image segmentation is crucial for accurate clinical diagnoses, yet it faces challenges such as low contrast between lesions and normal tissues, unclear boundaries, and high variability across patients. Deep learning has improved segmentation accuracy and efficiency, but it still relies heavily on expert annotations and struggles with the complexities of medical images. The small size of medical image datasets and the high cost of data acquisition further limit the performance of segmentation networks. Diffusion models, with their iterative denoising process, offer a promising alternative for better detail capture in segmentation. However, they face difficulties in accurately segmenting small targets and maintaining the precision of boundary details. This article discusses the importance of medical image segmentation, the limitations of current deep learning approaches, and the potential of diffusion models to address these challenges.
Deep learning-based segmentation methods are widely utilized for detecting lesions in ultrasound images. Throughout the imaging procedure, the attenuation and scattering of ultrasound waves cause contour blurring and the formation of artifacts, limiting the clarity of the acquired ultrasound images. To overcome this challenge, we propose a contour-based probabilistic segmentation model CP-UNet, which guides the segmentation network to enhance its focus on contour during decoding. We design a novel down-sampling module to enable the contour probability distribution modeling and encoding stages to acquire global-local features. Furthermore, the Gaussian Mixture Model utilizes optimized features to model the contour distribution, capturing the uncertainty of lesion boundaries. Extensive experiments with several state-of-the-art deep learning segmentation methods on three ultrasound image datasets show that our method performs better on breast and thyroid lesions segmentation.
The widespread use of sensor devices in IoT networks imposes a significant burden on energy consumption at the network’s edge. To address energy concerns, a prompt anomaly detection strategy is required on demand for troubleshooting resource-constrained IoT devices. It enables devices to adapt their configuration according to the dynamic signal quality and transmission settings. However, obtaining accurate energy data from IoT nodes without external devices is unfeasible. This paper proposes a framework for energy anomaly detection of IoT nodes using data transmission analysis. We use a public dataset that contains peer-to-peer IoT communication energy and link quality data. Our framework first utilizes linear regression to analyze and identify the dominant features of data communication for IoT transceivers. Later, a deep neural network modifies the gradient flow to focus on the dominant features. This modification improves the detection accuracy of anomalies by minimizing the associated reconstruction error. Finally, the energy stabilization feedback provides nodes with insight to change their transmission configuration for future communication. The experimental results show that the proposed approach outperforms other unsupervised models in anomalous energy detection. It also proves that redesigning the conventional loss function by enhancing the impact of our dominant features can dramatically improve the reliability of the anomaly detection method.
Medical imaging has significantly revolutionized medical diagnostics and treatment planning, progressing from early X-ray usage to sophisticated methods like MRIs, CT scans, and ultrasounds. This paper investigates the use of deep learning for medical image captioning, with a particular focus on uterine ultrasound images. These images are vital in obstetrics and gynecology for diagnosing and monitoring various conditions across different age groups. However, their interpretation is often challenging due to their complexity and variability. To address this, a deep learning-based medical image captioning system was developed, integrating Convolutional Neural Networks with a Bidirectional Gated Recurrent Unit network. This hybrid model processes both image and text features to generate descriptive captions for uterine ultrasound images. Our experimental results demonstrate the effectiveness of this approach over baseline methods, with the proposed model achieving superior performance in generating accurate and informative captions, as indicated by higher BLEU and ROUGE scores. By enhancing the interpretation of uterine ultrasound images, our research aims to assist medical professionals in making timely and accurate diagnoses, ultimately contributing to improved patient care.
Deep learning has proven very promising for interpreting MRI in brain tumor diagnosis. However, deep learning models suffer from a scarcity of brain MRI datasets for effective training. Self-supervised learning (SSL) models provide data-efficient and remarkable solutions to limited dataset problems. Therefore, this paper introduces a generative SSL model for brain tumor classification in two stages. The first stage is designed to pre-train a Residual Vision Transformer (ResViT) model for MRI synthesis as a pretext task. The second stage includes fine-tuning a ResViT-based classifier model as a downstream task. Accordingly, we aim to leverage local features via CNN and global features via ViT, employing a hybrid CNN-transformer architecture for ResViT in pretext and downstream tasks. Moreover, synthetic MRI images are utilized to balance the training set. The proposed model performs on public BraTs 2023, Figshare, and Kaggle datasets. Furthermore, we compare the proposed model with various deep learning models, including A-UNet, ResNet-9, pix2pix, pGAN for MRI synthesis, and ConvNeXtTiny, ResNet101, DenseNet12, Residual CNN, ViT for classification. According to the results, the proposed model pretraining on the MRI dataset is superior compared to the pretraining on the ImageNet dataset. Overall, the proposed model attains the highest accuracy, achieving 90.56% on the BraTs dataset with T1 sequence, 98.53% on the Figshare, and 98.47% on the Kaggle brain tumor datasets. As a result, the proposed model demonstrates a robust, effective, and successful approach to handling insufficient dataset challenges in MRI analysis by incorporating SSL, fine-tuning, data augmentation, and combining CNN and ViT.
The data-driven method for infrared small target detection (IRSTD) has achieved promising results. However, due to the small scale of infrared small target datasets and the limited number of pixels occupied by the targets themselves, it is a challenging task for deep learning methods to directly learn from these samples. Utilizing human expert knowledge to assist deep learning methods in better learning is worthy of exploration. To effectively guide the model to focus on targets' spatial features, this paper proposes the Local Contrast Attention Enhanced infrared small target detection Network (LCAE-Net), combining prior knowledge with data-driven deep learning methods. LCAE-Net is a U-shaped neural network model which consists of two developed modules: a Local Contrast Enhancement (LCE) module and a Channel Attention Enhancement (CAE) module. The LCE module takes advantages of prior knowledge, leveraging handcrafted convolution operator to acquire Local Contrast Attention (LCA), which could realize background suppression while enhance the potential target region, thus guiding the neural network to pay more attention to potential infrared small targets' location information. To effectively utilize the response information throughout downsampling progresses, the CAE module is proposed to achieve the information fusion among feature maps' different channels. Experimental results indicate that our LCAE-Net outperforms existing state-of-the-art methods on the three public datasets NUDT-SIRST, NUAA-SIRST, and IRSTD-1K, and its detection speed could reach up to 70 fps. Meanwhile, our model has a parameter count and Floating-Point Operations (FLOPs) of 1.945M and 4.862G respectively, which is suitable for deployment on edge devices.
AI workloads, particularly those driven by deep learning, are introducing novel usage patterns to high-performance computing (HPC) systems that are not comprehensively captured by standard HPC benchmarks. As one of the largest academic research centers dedicated to deep learning, Mila identified the need to develop a custom benchmarking suite to address the diverse requirements of its community, which consists of over 1,000 researchers. This report introduces Milabench, the resulting benchmarking suite. Its design was informed by an extensive literature review encompassing 867 papers, as well as surveys conducted with Mila researchers. This rigorous process led to the selection of 26 primary benchmarks tailored for procurement evaluations, alongside 16 optional benchmarks for in-depth analysis. We detail the design methodology, the structure of the benchmarking suite, and provide performance evaluations using GPUs from NVIDIA, AMD, and Intel. The Milabench suite is open source and can be accessed at github.com/mila-iqia/milabench.
Recently, deep-learning weather forecasting models have surpassed traditional numerical models in terms of the accuracy of meteorological variables. However, there is considerable potential for improvements in precipitation forecasts, especially for heavy precipitation events. To address this deficiency, we propose Leadsee-Precip, a global deep learning model to generate precipitation from meteorological circulation fields. The model utilizes an information balance scheme to tackle the challenges of predicting heavy precipitation caused by the long-tail distribution of precipitation data. Additionally, more accurate satellite and radar-based precipitation retrievals are used as training targets. Compared to artificial intelligence global weather models, the heavy precipitation from Leadsee-Precip is more consistent with observations and shows competitive performance against global numerical weather prediction models. Leadsee-Precip can be integrated with any global circulation model to generate precipitation forecasts. But the deviations between the predicted and the ground-truth circulation fields may lead to a weakened precipitation forecast, which could potentially be mitigated by further fine-tuning based on the predicted circulation fields.
Deep learning architectures based on convolutional neural networks tend to rely on continuous, smooth features. While this characteristics provides significant robustness and proves useful in many real-world tasks, it is strikingly incompatible with the physical characteristic of the world, which, at the scale in which humans operate, comprises crisp objects, typically representing well-defined categories. This study proposes a class of neurosymbolic systems that learn by reconstructing images in terms of visual primitives and are thus forced to form high-level, structural explanations of them. When applied to the task of diagnosing abnormalities in histological imaging, the method proved superior to a conventional deep learning architecture in terms of classification accuracy, while being more transparent.
Imaging-based deep learning has transformed healthcare research, yet its clinical adoption remains limited due to challenges in comparing imaging models with traditional non-imaging and tabular data. To bridge this gap, we introduce Barttender, an interpretable framework that uses deep learning for the direct comparison of the utility of imaging versus non-imaging tabular data for tasks like disease prediction. Barttender converts non-imaging tabular features, such as scalar data from electronic health records, into grayscale bars, facilitating an interpretable and scalable deep learning based modeling of both data modalities. Our framework allows researchers to evaluate differences in utility through performance measures, as well as local (sample-level) and global (population-level) explanations. We introduce a novel measure to define global feature importances for image-based deep learning models, which we call gIoU. Experiments on the CheXpert and MIMIC datasets with chest X-rays and scalar data from electronic health records show that Barttender performs comparably to traditional methods and offers enhanced explainability using deep learning models.
The rapid advancement of artificial intelligence has led to increasingly sophisticated deep learning models, which frequently operate as opaque 'black boxes' with limited transparency in their decision-making processes. This lack of interpretability presents considerable challenges, especially in high-stakes applications where understanding the rationale behind a model's outputs is as essential as the outputs themselves. This study addresses the pressing need for interpretability in AI systems, emphasizing its role in fostering trust, ensuring accountability, and promoting responsible deployment in mission-critical fields. To address the interpretability challenge in deep learning, we introduce DLBacktrace, an innovative technique developed by the AryaXAI team to illuminate model decisions across a wide array of domains, including simple Multi Layer Perceptron (MLPs), Convolutional Neural Networks (CNNs), Large Language Models (LLMs), Computer Vision Models, and more. We provide a comprehensive overview of the DLBacktrace algorithm and present benchmarking results, comparing its performance against established interpretability methods, such as SHAP, LIME, GradCAM, Integrated Gradients, SmoothGrad, and Attention Rollout, using diverse task-based metrics. The proposed DLBacktrace technique is compatible with various model architectures built in PyTorch and TensorFlow, supporting models like Llama 3.2, other NLP architectures such as BERT and LSTMs, computer vision models like ResNet and U-Net, as well as custom deep neural network (DNN) models for tabular data. This flexibility underscores DLBacktrace's adaptability and effectiveness in enhancing model transparency across a broad spectrum of applications. The library is open-sourced and available at https://github.com/AryaXAI/DLBacktrace .
Throughout the scientific computing space, deep learning algorithms have shown excellent performance in a wide range of applications. As these deep neural networks (DNNs) continue to mature, the necessary compute required to train them has continued to grow. Today, modern DNNs require millions of FLOPs and days to weeks of training to generate a well-trained model. The training times required for DNNs are oftentimes a bottleneck in DNN research for a variety of deep learning applications, and as such, accelerating and scaling DNN training enables more robust and accelerated research. To that end, in this work, we explore utilizing the NRP Nautilus HyperCluster to automate and scale deep learning model training for three separate applications of DNNs, including overhead object detection, burned area segmentation, and deforestation detection. In total, 234 deep neural models are trained on Nautilus, for a total time of 4,040 hours
High-energy large-scale particle colliders generate data at extraordinary rates. Developing real-time high-throughput data compression algorithms to reduce data volume and meet the bandwidth requirement for storage has become increasingly critical. Deep learning is a promising technology that can address this challenging topic. At the newly constructed sPHENIX experiment at the Relativistic Heavy Ion Collider, a Time Projection Chamber (TPC) serves as the main tracking detector, which records three-dimensional particle trajectories in a volume of a gas-filled cylinder. In terms of occupancy, the resulting data flow can be very sparse reaching $10^{-3}$ for proton-proton collisions. Such sparsity presents a challenge to conventional learning-free lossy compression algorithms, such as SZ, ZFP, and MGARD. In contrast, emerging deep learning-based models, particularly those utilizing convolutional neural networks for compression, have outperformed these conventional methods in terms of compression ratios and reconstruction accuracy. However, research on the efficacy of these deep learning models in handling sparse datasets, like those produced in particle colliders, remains limited. Furthermore, most deep learning models do not adapt their processing speeds to data sparsity, which affects efficiency. To address this issue, we propose a novel approach for TPC data compression via key-point identification facilitated by sparse convolution. Our proposed algorithm, BCAE-VS, achieves a $75\%$ improvement in reconstruction accuracy with a $10\%$ increase in compression ratio over the previous state-of-the-art model. Additionally, BCAE-VS manages to achieve these results with a model size over two orders of magnitude smaller. Lastly, we have experimentally verified that as sparsity increases, so does the model's throughput.
The increasing complexity of deep learning models necessitates specialized hardware and software optimizations, particularly for deep learning accelerators. Existing autotuning methods often suffer from prolonged tuning times due to profiling invalid configurations, which can cause runtime errors. We introduce ML$^2$Tuner, a multi-level machine learning tuning technique that enhances autotuning efficiency by incorporating a validity prediction model to filter out invalid configurations and an advanced performance prediction model utilizing hidden features from the compilation process. Experimental results on an extended VTA accelerator demonstrate that ML$^2$Tuner achieves equivalent performance improvements using only 12.3% of the samples required with a similar approach as TVM and reduces invalid profiling attempts by an average of 60.8%, Highlighting its potential to enhance autotuning performance by filtering out invalid configurations
Deep learning has revolutionized computing in many real-world applications, arguably due to its remarkable performance and extreme convenience as an end-to-end solution. However, deep learning models can be costly to train and to use, especially for those large-scale models, making it necessary to optimize the original overly complicated models into smaller ones in scenarios with limited resources such as mobile applications or simply for resource saving. The key question in such model optimization is, how can we effectively identify and measure the redundancy in a deep learning model structure. While several common metrics exist in the popular model optimization techniques to measure the performance of models after optimization, they are not able to quantitatively inform the degree of remaining redundancy. To address the problem, we present a novel testing approach, i.e., RedTest, which proposes a novel testing metric called Model Structural Redundancy Score (MSRS) to quantitatively measure the degree of redundancy in a deep learning model structure. We first show that MSRS is effective in both revealing and assessing the redundancy issues in many state-of-the-art models, which urgently calls for model optimization. Then, we utilize MSRS to assist deep learning model developers in two practical application scenarios: 1) in Neural Architecture Search, we design a novel redundancy-aware algorithm to guide the search for the optimal model structure and demonstrate its effectiveness by comparing it to existing standard NAS practice; 2) in the pruning of large-scale pre-trained models, we prune the redundant layers of pre-trained models with the guidance of layer similarity to derive less redundant ones of much smaller size. Extensive experimental results demonstrate that removing such redundancy has a negligible effect on the model utility.
Accurate and fast recognition of forgeries is an issue of great importance in the fields of artificial intelligence, image processing and object detection. Recognition of forgeries of facial imagery is the process of classifying and defining the faces in it by analyzing real-world facial images. This process is usually accomplished by extracting features from an image, using classifier algorithms, and correctly interpreting the results. Recognizing forgeries of facial imagery correctly can encounter many different challenges. For example, factors such as changing lighting conditions, viewing faces from different angles can affect recognition performance, and background complexity and perspective changes in facial images can make accurate recognition difficult. Despite these difficulties, significant progress has been made in the field of forgery detection. Deep learning algorithms, especially Convolutional Neural Networks (CNNs), have significantly improved forgery detection performance. This study focuses on image processing-based forgery detection using Fake-Vs-Real-Faces (Hard) [10] and 140k Real and Fake Faces [61] data sets. Both data sets consist of two classes containing real and fake facial images. In our study, two lightweight deep learning models are proposed to conduct forgery detection using these images. Additionally, 8 different pretrained CNN architectures were tested on both data sets and the results were compared with newly developed lightweight CNN models. It's shown that the proposed lightweight deep learning models have minimum number of layers. It's also shown that the proposed lightweight deep learning models detect forgeries of facial imagery accurately, and computationally efficiently. Although the data set consists only of face images, the developed models can also be used in other two-class object recognition problems.
The emergence of Deep Learning has marked a profound shift in machine learning, driven by numerous breakthroughs achieved in recent years. However, as Deep Learning becomes increasingly present in everyday tools and applications, there is a growing need to address unresolved challenges related to its efficiency and sustainability. This dissertation delves into the role of inductive biases -- particularly, continuous modeling and symmetry preservation -- as strategies to enhance the efficiency of Deep Learning. It is structured in two main parts. The first part investigates continuous modeling as a tool to improve the efficiency of Deep Learning algorithms. Continuous modeling involves the idea of parameterizing neural operations in a continuous space. The research presented here demonstrates substantial benefits for the (i) computational efficiency -- in time and memory, (ii) the parameter efficiency, and (iii) design efficiency -- the complexity of designing neural architectures for new datasets and tasks. The second focuses on the role of symmetry preservation on Deep Learning efficiency. Symmetry preservation involves designing neural operations that align with the inherent symmetries of data. The research presented in this part highlights significant gains both in data and parameter efficiency through the use of symmetry preservation. However, it also acknowledges a resulting trade-off of increased computational costs. The dissertation concludes with a critical evaluation of these findings, openly discussing their limitations and proposing strategies to address them, informed by literature and the author insights. It ends by identifying promising future research avenues in the exploration of inductive biases for efficiency, and their wider implications for Deep Learning.