The application of TensorFlow pre-trained models in deep learning is explored, with an emphasis on practical guidance for tasks such as image classification and object detection. The study covers modern architectures, including ResNet, MobileNet, and EfficientNet, and demonstrates the effectiveness of transfer learning through real-world examples and experiments. A comparison of linear probing and model fine-tuning is presented, supplemented by visualizations using techniques like PCA, t-SNE, and UMAP, allowing for an intuitive understanding of the impact of these approaches. The work provides complete example code and step-by-step instructions, offering valuable insights for both beginners and advanced users. By integrating theoretical concepts with hands-on practice, the paper equips readers with the tools necessary to address deep learning challenges efficiently.
Knee osteoarthritis (OA) is the most common joint disorder and a leading cause of disability. Diagnosing OA severity typically requires expert assessment of X-ray images and is commonly based on the Kellgren-Lawrence grading system, a time-intensive process. This study aimed to develop an automated deep learning model to classify knee OA severity, reducing the need for expert evaluation. First, we evaluated ten state-of-the-art deep learning models, achieving a top accuracy of 0.69 with individual models. To address class imbalance, we employed weighted sampling, improving accuracy to 0.70. We further applied Smooth-GradCAM++ to visualize decision-influencing regions, enhancing the explainability of the best-performing model. Finally, we developed ensemble models using majority voting and a shallow neural network. Our ensemble model, KneeXNet, achieved the highest accuracy of 0.72, demonstrating its potential as an automated tool for knee OA assessment.
While deep learning has significantly advanced automatic plant disease detection through image-based classification, improving model explainability remains crucial for reliable disease detection. In this study, we apply the Automated Concept-based Explanation (ACE) method to plant disease classification using the widely adopted InceptionV3 model and the PlantVillage dataset. ACE automatically identifies the visual concepts found in the image data and provides insights about the critical features influencing the model predictions. This approach reveals both effective disease-related patterns and incidental biases, such as those from background or lighting that can compromise model robustness. Through systematic experiments, ACE helped us to identify relevant features and pinpoint areas for targeted model improvement. Our findings demonstrate the potential of ACE to improve the explainability of plant disease classification based on deep learning, which is essential for producing transparent tools for plant disease management in agriculture.
Channel State Information (CSI) is the cornerstone in both wireless communication and sensing systems. In wireless communication systems, CSI provides essential insights into channel conditions, enabling system optimizations like channel compensation and dynamic resource allocation. However, the high computational complexity of CSI estimation algorithms necessitates the development of fast deep learning methods for CSI prediction. In wireless sensing systems, CSI can be leveraged to infer environmental changes, facilitating various functions, including gesture recognition and people identification. Deep learning methods have demonstrated significant advantages over model-based approaches in these fine-grained CSI classification tasks, particularly when classes vary across different scenarios. However, a major challenge in training deep learning networks for wireless systems is the limited availability of data, further complicated by the diverse formats of many public datasets, which hinder integration. Additionally, collecting CSI data can be resource-intensive, requiring considerable time and manpower. To address these challenges, we propose CSI-BERT2 for CSI prediction and classification tasks, effectively utilizing limited data through a pre-training and fine-tuning approach. Building on CSI-BERT1, we enhance the model architecture by introducing an Adaptive Re-Weighting Layer (ARL) and a Multi-Layer Perceptron (MLP) to better capture sub-carrier and timestamp information, effectively addressing the permutation-invariance problem. Furthermore, we propose a Mask Prediction Model (MPM) fine-tuning method to improve the model's adaptability for CSI prediction tasks. Experimental results demonstrate that CSI-BERT2 achieves state-of-the-art performance across all tasks.
Accurate understanding of muscle activation and muscle forces plays an essential role in neuro-rehabilitation and musculoskeletal disorder treatments. Computational musculoskeletal modeling has been widely used as a powerful non-invasive tool to estimate them through inverse dynamics using static optimization, but the inherent computational complexity results in time-consuming analysis. In this paper, we propose a knowledge-based deep learning framework for time-efficient inverse dynamic analysis, which can predict muscle activation and muscle forces from joint kinematic data directly while not requiring any label information during model training. The Bidirectional Gated Recurrent Unit (BiGRU) neural network is selected as the backbone of our model due to its proficient handling of time-series data. Prior physical knowledge from forward dynamics and pre-selected inverse dynamics based physiological criteria are integrated into the loss function to guide the training of neural networks. Experimental validations on two datasets, including one benchmark upper limb movement dataset and one self-collected lower limb movement dataset from six healthy subjects, are performed. The experimental results have shown that the selected BiGRU architecture outperforms other neural network models when trained using our specifically designed loss function, which illustrates the effectiveness and robustness of the proposed framework.
The project aims to develop differentially private deep learning models for image classification on CIFAR-10 datasets \cite{cifar10} and analyze the impact of various privacy parameters on model accuracy. We have implemented five different deep learning models, namely ConvNet, ResNet18, EfficientNet, ViT, and DenseNet121 and three supervised classifiers namely K-Nearest Neighbors, Naive Bayes Classifier and Support Vector Machine. We evaluated the performance of these models under varying settings. Our best performing model to date is EfficientNet with test accuracy of $59.63\%$ with the following parameters (Adam optimizer, batch size 256, epoch size 100, epsilon value 5.0, learning rate $1e-3$, clipping threshold 1.0, and noise multiplier 0.912).
GraphNeuralNetworks.jl is an open-source framework for deep learning on graphs, written in the Julia programming language. It supports multiple GPU backends, generic sparse or dense graph representations, and offers convenient interfaces for manipulating standard, heterogeneous, and temporal graphs with attributes at the node, edge, and graph levels. The framework allows users to define custom graph convolutional layers using gather/scatter message-passing primitives or optimized fused operations. It also includes several popular layers, enabling efficient experimentation with complex deep architectures. The package is available on GitHub: \url{https://github.com/JuliaGraphs/GraphNeuralNetworks.jl}.
Recent advancements in deep learning for tabular data have shown promise, but challenges remain in achieving interpretable and lightweight models. This paper introduces Table2Image, a novel framework that transforms tabular data into realistic and diverse image representations, enabling deep learning methods to achieve competitive classification performance. To address multicollinearity in tabular data, we propose a variance inflation factor (VIF) initialization, which enhances model stability and robustness by incorporating statistical feature relationships. Additionally, we present an interpretability framework that integrates insights from both the original tabular data and its transformed image representations, by leveraging Shapley additive explanations (SHAP) and methods to minimize distributional discrepancies. Experiments on benchmark datasets demonstrate the efficacy of our approach, achieving superior accuracy, area under the curve, and interpretability compared to recent leading deep learning models. Our lightweight method provides a scalable and reliable solution for tabular data classification.
Time series anomaly detection (TSAD) has been a research hotspot in both academia and industry in recent years. Deep learning methods have become the mainstream research direction due to their excellent performance. However, new viewpoints have emerged in recent TSAD research. Deep learning is not required for TSAD due to limitations such as slow deep learning speed. The Broad Learning System (BLS) is a shallow network framework that benefits from its ease of optimization and speed. It has been shown to outperform machine learning approaches while remaining competitive with deep learning. Based on the current situation of TSAD, we propose the Contrastive Patch-based Broad Learning System (CPatchBLS). This is a new exploration of patching technique and BLS, providing a new perspective for TSAD. We construct Dual-PatchBLS as a base through patching and Simple Kernel Perturbation (SKP) and utilize contrastive learning to capture the differences between normal and abnormal data under different representations. To compensate for the temporal semantic loss caused by various patching, we propose CPatchBLS with model level integration, which takes advantage of BLS's fast feature to build model-level integration and improve model detection. Using five real-world series anomaly detection datasets, we confirmed the method's efficacy, outperforming previous deep learning and machine learning methods while retaining a high level of computing efficiency.
Bankart lesions, or anterior-inferior glenoid labral tears, are diagnostically challenging on standard MRIs due to their subtle imaging features-often necessitating invasive MRI arthrograms (MRAs). This study develops deep learning (DL) models to detect Bankart lesions on both standard MRIs and MRAs, aiming to improve diagnostic accuracy and reduce reliance on MRAs. We curated a dataset of 586 shoulder MRIs (335 standard, 251 MRAs) from 558 patients who underwent arthroscopy. Ground truth labels were derived from intraoperative findings, the gold standard for Bankart lesion diagnosis. Separate DL models for MRAs and standard MRIs were trained using the Swin Transformer architecture, pre-trained on a public knee MRI dataset. Predictions from sagittal, axial, and coronal views were ensembled to optimize performance. The models were evaluated on a 20% hold-out test set (117 MRIs: 46 MRAs, 71 standard MRIs). Bankart lesions were identified in 31.9% of MRAs and 8.6% of standard MRIs. The models achieved AUCs of 0.87 (86% accuracy, 83% sensitivity, 86% specificity) and 0.90 (85% accuracy, 82% sensitivity, 86% specificity) on standard MRIs and MRAs, respectively. These results match or surpass radiologist performance on our dataset and reported literature metrics. Notably, our model's performance on non-invasive standard MRIs matched or surpassed the radiologists interpreting MRAs. This study demonstrates the feasibility of using DL to address the diagnostic challenges posed by subtle pathologies like Bankart lesions. Our models demonstrate potential to improve diagnostic confidence, reduce reliance on invasive imaging, and enhance accessibility to care.
As deep learning models scale, their training cost has surged significantly. Due to both hardware advancements and limitations in current software stacks, the need for data efficiency has risen. Data efficiency refers to the effective hiding of data access latency and the avoidance of unnecessary data movements. Major challenges arise from the growing disparity between GPU memory bandwidth and computational throughput, imminent GPU memory capacity limitations, and inefficiencies in the PyTorch software stack, including a lack of device-specific PCIe transfer optimizations and high-level domain-specific abstractions. To effectively mitigate these data inefficiencies for deep learning training, this dissertation analyzes data inefficiency in representative deep training tasks, specifically in graph neural networks (GNNs) and large language models (LLMs). It then proposes novel runtime and code generation techniques to mitigate these challenges and implements these optimizations seamlessly within the PyTorch stack while maintaining strong programmability and interoperability. First, PyTorch-Direct is devised to incorporate the GPU-centric PCIe data transfer paradigm in PyTorch for GNN training. Next, Hector intermediate representation (IR) and its code generator are proposed to introduce domain-specific high-level abstraction and systematically address memory-intensive performance challenges for relational GNNs. Finally, in LLM training, the throughput has been increasingly constrained by GPU memory capacity. To mitigate this, the SSDTrain offloading framework is designed and implemented. Together, these contributions show that code generation and runtime techniques can systematically mitigate the data management bottlenecks in deep learning training, which stem from the data-intensive nature of workloads and the oversimplification inherent in the deep learning training software stack.
Marine heatwaves (MHWs), an extreme climate phenomenon, pose significant challenges to marine ecosystems and industries, with their frequency and intensity increasing due to climate change. This study introduces an integrated deep learning approach to forecast short-to-long-term MHWs on a global scale. The approach combines graph representation for modeling spatial properties in climate data, imbalanced regression to handle skewed data distributions, and temporal diffusion to enhance forecast accuracy across various lead times. To the best of our knowledge, this is the first study that synthesizes three spatiotemporal anomaly methodologies to predict MHWs. Additionally, we introduce a method for constructing graphs that avoids isolated nodes and provide a new publicly available sea surface temperature anomaly graph dataset. We examine the trade-offs in the selection of loss functions and evaluation metrics for MHWs. We analyze spatial patterns in global MHW predictability by focusing on historical hotspots, and our approach demonstrates better performance compared to traditional numerical models in regions such as the middle south Pacific, equatorial Atlantic near Africa, south Atlantic, and high-latitude Indian Ocean. We highlight the potential of temporal diffusion to replace the conventional sliding window approach for long-term forecasts, achieving improved prediction up to six months in advance. These insights not only establish benchmarks for machine learning applications in MHW forecasting but also enhance understanding of general climate forecasting methodologies.
Pansharpening is a crucial task in remote sensing, enabling the generation of high-resolution multispectral images by fusing low-resolution multispectral data with high-resolution panchromatic images. This paper provides a comprehensive analysis of traditional and deep learning-based pansharpening methods. While state-of-the-art deep learning methods have significantly improved image quality, issues like spectral distortions persist. To address this, we propose enhancements to the PSGAN framework by introducing novel regularization techniques for the generator loss function. Experimental results on images from the Worldview-3 dataset demonstrate that the proposed modifications improve spectral fidelity and achieve superior performance across multiple quantitative metrics while delivering visually superior results.
Stroke is a major global health problem that causes mortality and morbidity. Predicting the outcomes of stroke intervention can facilitate clinical decision-making and improve patient care. Engaging and developing deep learning techniques can help to analyse large and diverse medical data, including brain scans, medical reports and other sensor information, such as EEG, ECG, EMG and so on. Despite the common data standardisation challenge within medical image analysis domain, the future of deep learning in stroke outcome prediction lie in using multimodal information, including final infarct data, to achieve better prediction of long-term functional outcomes. This article provides a broad review of recent advances and applications of deep learning in the prediction of stroke outcomes, including (i) the data and models used, (ii) the prediction tasks and measures of success, (iii) the current challenges and limitations, and (iv) future directions and potential benefits. This comprehensive review aims to provide researchers, clinicians, and policy makers with an up-to-date understanding of this rapidly evolving and promising field.
Integrating invariance into data representations is a principled design in intelligent systems and web applications. Representations play a fundamental role, where systems and applications are both built on meaningful representations of digital inputs (rather than the raw data). In fact, the proper design/learning of such representations relies on priors w.r.t. the task of interest. Here, the concept of symmetry from the Erlangen Program may be the most fruitful prior -- informally, a symmetry of a system is a transformation that leaves a certain property of the system invariant. Symmetry priors are ubiquitous, e.g., translation as a symmetry of the object classification, where object category is invariant under translation. The quest for invariance is as old as pattern recognition and data mining itself. Invariant design has been the cornerstone of various representations in the era before deep learning, such as the SIFT. As we enter the early era of deep learning, the invariance principle is largely ignored and replaced by a data-driven paradigm, such as the CNN. However, this neglect did not last long before they encountered bottlenecks regarding robustness, interpretability, efficiency, and so on. The invariance principle has returned in the era of rethinking deep learning, forming a new field known as Geometric Deep Learning (GDL). In this tutorial, we will give a historical perspective of the invariance in data representations. More importantly, we will identify those research dilemmas, promising works, future directions, and web applications.
Object detection is a fundamental task in computer vision and image understanding, with the goal of identifying and localizing objects of interest within an image while assigning them corresponding class labels. Traditional methods, which relied on handcrafted features and shallow models, struggled with complex visual data and showed limited performance. These methods combined low-level features with contextual information and lacked the ability to capture high-level semantics. Deep learning, especially Convolutional Neural Networks (CNNs), addressed these limitations by automatically learning rich, hierarchical features directly from data. These features include both semantic and high-level representations essential for accurate object detection. This paper reviews object detection frameworks, starting with classical computer vision methods. We categorize object detection approaches into two groups: (1) classical computer vision techniques and (2) CNN-based detectors. We compare major CNN models, discussing their strengths and limitations. In conclusion, this review highlights the significant advancements in object detection through deep learning and identifies key areas for further research to improve performance.
Expanding the existing sensing systems to provide high-quality deep learning models for more domains, such as new users or environments, is challenged by the limited labeled data and the data and device heterogeneities. While knowledge distillation methods could overcome label scarcity and device heterogeneity, they assume the teachers are fully reliable and overlook the data heterogeneity, which prevents the direct adoption of existing models. To address this problem, this paper proposes an efficient knowledge transfer framework, HaKT, to expand sensing systems. It first selects multiple high-quality models from the system at a low cost and then fuses their knowledge by assigning sample-wise weights to their predictions. Later, the fused knowledge is selectively injected into the customized models for new domains based on the knowledge quality. Extensive experiments on different tasks, modalities, and settings show that HaKT outperforms stat-of-the-art baselines by at most 16.5% accuracy and saves up to 39% communication traffic.
Finite Element Analysis (FEA) is a powerful but computationally intensive method for simulating physical phenomena. Recent advancements in machine learning have led to surrogate models capable of accelerating FEA. Yet there are still limitations in developing surrogates of transient FEA models that can simultaneously predict the solutions for both nodes and elements with applicability on both the 2D and 3D domains. Motivated by this research gap, this study proposes DeepFEA, a deep learning-based framework that leverages a multilayer Convolutional Long Short-Term Memory (ConvLSTM) network branching into two parallel convolutional neural networks to predict the solutions for both nodes and elements of FEA models. The proposed network is optimized using a novel adaptive learning algorithm, called Node-Element Loss Optimization (NELO). NELO minimizes the error occurring at both branches of the network enabling the prediction of solutions for transient FEA simulations. The experimental evaluation of DeepFEA is performed on three datasets in the context of structural mechanics, generated to serve as publicly available reference datasets. The results show that DeepFEA can achieve less than 3% normalized mean and root mean squared error for 2D and 3D simulation scenarios, and inference times that are two orders of magnitude faster than FEA. In contrast, relevant state-of-the-art methods face challenges with multi-dimensional output and dynamic input prediction. Furthermore, DeepFEA's robustness was demonstrated in a real-life biomedical scenario, confirming its suitability for accurate and efficient predictions of FEA simulations.
Robotic-assisted minimally invasive esophagectomy (RAMIE) is a recognized treatment for esophageal cancer, offering better patient outcomes compared to open surgery and traditional minimally invasive surgery. RAMIE is highly complex, spanning multiple anatomical areas and involving repetitive phases and non-sequential phase transitions. Our goal is to leverage deep learning for surgical phase recognition in RAMIE to provide intraoperative support to surgeons. To achieve this, we have developed a new surgical phase recognition dataset comprising 27 videos. Using this dataset, we conducted a comparative analysis of state-of-the-art surgical phase recognition models. To more effectively capture the temporal dynamics of this complex procedure, we developed a novel deep learning model featuring an encoder-decoder structure with causal hierarchical attention, which demonstrates superior performance compared to existing models.
Recently, there has been an increasing interest in performing post-hoc uncertainty estimation about the predictions of pre-trained deep neural networks (DNNs). Given a pre-trained DNN via back-propagation, these methods enhance the original network by adding output confidence measures, such as error bars, without compromising its initial accuracy. In this context, we introduce a novel family of sparse variational Gaussian processes (GPs), where the posterior mean is fixed to any continuous function when using a universal kernel. Specifically, we fix the mean of this GP to the output of the pre-trained DNN, allowing our approach to effectively fit the GP's predictive variances to estimate the DNN prediction uncertainty. Our approach leverages variational inference (VI) for efficient stochastic optimization, with training costs that remain independent of the number of training points, scaling efficiently to large datasets such as ImageNet. The proposed method, called fixed mean GP (FMGP), is architecture-agnostic, relying solely on the pre-trained model's outputs to adjust the predictive variances. Experimental results demonstrate that FMGP improves both uncertainty estimation and computational efficiency when compared to state-of-the-art methods.