In knowledge graph embedding, aside from positive triplets (ie: facts in the knowledge graph), the negative triplets used for training also have a direct influence on the model performance. In reality, since knowledge graphs are sparse and incomplete, negative triplets often lack explicit labels, and thus they are often obtained from various sampling strategies (eg: randomly replacing an entity in a positive triplet). An ideal sampled negative triplet should be informative enough to help the model train better. However, existing methods often ignore diversity and adaptiveness in their sampling process, which harms the informativeness of negative triplets. As such, we propose a generative adversarial approach called Diversified and Adaptive Negative Sampling DANS on knowledge graphs. DANS is equipped with a two-way generator that generates more diverse negative triplets through two pathways, and an adaptive mechanism that produces more fine-grained examples by localizing the global generator for different entities and relations. On the one hand, the two-way generator increase the overall informativeness with more diverse negative examples; on the other hand, the adaptive mechanism increases the individual sample-wise informativeness with more fine-grained sampling. Finally, we evaluate the performance of DANS on three benchmark knowledge graphs to demonstrate its effectiveness through quantitative and qualitative experiments.
We introduce a neural architecture finetuned for the task of scenario context generation: The relevant location and time of an event or entity mentioned in text. Contextualizing information extraction helps to scope the validity of automated finings when aggregating them as knowledge graphs. Our approach uses a high-quality curated dataset of time and location annotations in a corpus of epidemiology papers to train an encoder-decoder architecture. We also explored the use of data augmentation techniques during training. Our findings suggest that a relatively small fine-tuned encoder-decoder model performs better than out-of-the-box LLMs and semantic role labeling parsers to accurate predict the relevant scenario information of a particular entity or event.
Large language models (LLMs) have significantly advanced performance across a spectrum of natural language processing (NLP) tasks. Yet, their application to knowledge graphs (KGs), which describe facts in the form of triplets and allow minimal hallucinations, remains an underexplored frontier. In this paper, we investigate the integration of LLMs with KGs by introducing a specialized KG Language (KGL), where a sentence precisely consists of an entity noun, a relation verb, and ends with another entity noun. Despite KGL's unfamiliar vocabulary to the LLM, we facilitate its learning through a tailored dictionary and illustrative sentences, and enhance context understanding via real-time KG context retrieval and KGL token embedding augmentation. Our results reveal that LLMs can achieve fluency in KGL, drastically reducing errors compared to conventional KG embedding methods on KG completion. Furthermore, our enhanced LLM shows exceptional competence in generating accurate three-word sentences from an initial entity and interpreting new unseen terms out of KGs.
Recent works integrating Knowledge Graphs (KGs) have led to promising improvements in enhancing reasoning accuracy of Large Language Models (LLMs). However, current benchmarks focus mainly on closed-ended tasks, leaving a gap in the assessment of more complex real-world scenarios. This gap has also obscured the evaluation of KGs' potential to mitigate the problem of hallucination in LLMs. To fill the gap, we introduce OKGQA, a new benchmark specifically designed to assess LLMs enhanced with KGs under open-ended, real-world question answering scenarios. OKGQA is designed to closely reflect the complexities of practical applications using questions from different types, and incorporates specific metrics to measure both the reduction in hallucinations and the enhancement in reasoning capabilities. To consider the scenario in which KGs may have varying levels of mistakes, we propose another benchmark variant OKGQA-P to assess model performance when the semantics and structure of KGs are deliberately perturbed and contaminated. OKGQA aims to (1) explore whether KGs can make LLMs more trustworthy in an open-ended setting, and (2) conduct a comparative analysis to shed light on methods and future directions for leveraging KGs to reduce LLMs' hallucination. We believe that this study can facilitate a more complete performance comparison and encourage continuous improvement in integrating KGs with LLMs.
Complex logical query answering (CLQA) is a challenging task that involves finding answer entities for complex logical queries over incomplete knowledge graphs (KGs). Previous research has explored the use of pre-trained knowledge graph completion (KGC) models, which can predict the missing facts in KGs, to answer complex logical queries. However, KGC models are typically evaluated using ranking evaluation metrics, which may result in values of predictions of KGC models that are not well-calibrated. In this paper, we propose a method for calibrating KGC models, namely CKGC, which enables KGC models to adapt to answering complex logical queries. Notably, CKGC is lightweight and effective. The adaptation function is simple, allowing the model to quickly converge during the adaptation process. The core concept of CKGC is to map the values of predictions of KGC models to the range [0, 1], ensuring that values associated with true facts are close to 1, while values linked to false facts are close to 0. Through experiments on three benchmark datasets, we demonstrate that our proposed calibration method can significantly boost model performance in the CLQA task. Moreover, our approach can enhance the performance of CLQA while preserving the ranking evaluation metrics of KGC models. The code is available at https://github.com/changyi7231/CKGC.
Vast amounts of heterogeneous knowledge are becoming publicly available in the form of knowledge graphs, often linking multiple sources of data that have never been together before, and thereby enabling scholars to answer many new research questions. It is often not known beforehand, however, which questions the data might have the answers to, potentially leaving many interesting and novel insights to remain undiscovered. To support scholars during this scientific workflow, we introduce an anytime algorithm for the bottom-up discovery of generalized multimodal graph patterns in knowledge graphs. Each pattern is a conjunction of binary statements with (data-) type variables, constants, and/or value patterns. Upon discovery, the patterns are converted to SPARQL queries and presented in an interactive facet browser together with metadata and provenance information, enabling scholars to explore, analyse, and share queries. We evaluate our method from a user perspective, with the help of domain experts in the humanities.
We introduce a Retrieval-Augmented Generation (RAG) system for translating user questions into accurate federated SPARQL queries over bioinformatics knowledge graphs (KGs) leveraging Large Language Models (LLMs). To enhance accuracy and reduce hallucinations in query generation, our system utilises metadata from the KGs, including query examples and schema information, and incorporates a validation step to correct generated queries. The system is available online at chat.expasy.org.
Background. In the last decades, several life science resources have structured data using the same framework and made these accessible using the same query language to facilitate interoperability. Knowledge graphs have seen increased adoption in bioinformatics due to their advantages for representing data in a generic graph format. For example, yummydata.org catalogs more than 60 knowledge graphs accessible through SPARQL, a technical query language. Although SPARQL allows powerful, expressive queries, even across physically distributed knowledge graphs, formulating such queries is a challenge for most users. Therefore, to guide users in retrieving the relevant data, many of these resources provide representative examples. These examples can also be an important source of information for machine learning, if a sufficiently large number of examples are provided and published in a common, machine-readable and standardized format across different resources. Findings. We introduce a large collection of human-written natural language questions and their corresponding SPARQL queries over federated bioinformatics knowledge graphs (KGs) collected for several years across different research groups at the SIB Swiss Institute of Bioinformatics. The collection comprises more than 1000 example questions and queries, including 65 federated queries. We propose a methodology to uniformly represent the examples with minimal metadata, based on existing standards. Furthermore, we introduce an extensive set of open-source applications, including query graph visualizations and smart query editors, easily reusable by KG maintainers who adopt the proposed methodology. Conclusions. We encourage the community to adopt and extend the proposed methodology, towards richer KG metadata and improved Semantic Web services.
Retrieval-Augmented Generation (RAG) is widely used to inject external non-parametric knowledge into large language models (LLMs). Recent works suggest that Knowledge Graphs (KGs) contain valuable external knowledge for LLMs. Retrieving information from KGs differs from extracting it from document sets. Most existing approaches seek to directly retrieve relevant subgraphs, thereby eliminating the need for extensive SPARQL annotations, traditionally required by semantic parsing methods. In this paper, we model the subgraph retrieval task as a conditional generation task handled by small language models. Specifically, we define a subgraph identifier as a sequence of relations, each represented as a special token stored in the language models. Our base generative subgraph retrieval model, consisting of only 220M parameters, achieves competitive retrieval performance compared to state-of-the-art models relying on 7B parameters, demonstrating that small language models are capable of performing the subgraph retrieval task. Furthermore, our largest 3B model, when plugged with an LLM reader, sets new SOTA end-to-end performance on both the WebQSP and CWQ benchmarks. Our model and data will be made available online: https://github.com/hwy9855/GSR.
Electronic commerce, or e-commerce, is the buying and selling of goods and services, or the transmitting of funds or data online. E-commerce platforms come in many kinds, with global players such as Amazon, Airbnb, Alibaba, eBay and platforms targeting specific geographic regions. Information retrieval has a natural role to play in e-commerce, especially in connecting people to goods and services. Information discovery in e-commerce concerns different types of search (e.g., exploratory search vs. lookup tasks), recommender systems, and natural language processing in e-commerce portals. The rise in popularity of e-commerce sites has made research on information discovery in e-commerce an increasingly active research area. This is witnessed by an increase in publications and dedicated workshops in this space. Methods for information discovery in e-commerce largely focus on improving the effectiveness of e-commerce search and recommender systems, on enriching and using knowledge graphs to support e-commerce, and on developing innovative question answering and bot-based solutions that help to connect people to goods and services. In this survey, an overview is given of the fundamental infrastructure, algorithms, and technical solutions for information discovery in e-commerce. The topics covered include user behavior and profiling, search, recommendation, and language technology in e-commerce.
Event knowledge graphs (EKG) extend the classical notion of a trace to capture multiple, interacting views of a process execution. In this paper, we tackle the open problem of automating EKG discovery from uncurated data through a principled, probabilistic framing based on the outcome space resulting from featured-derived partial orders on events. From this, we derive an EKG discovery algorithm based upon statistical inference rather than an ad-hoc or heuristic-based strategy, or relying on manual analysis from domain experts. This approach comes at the computational cost of exploring a large, non-convex hypothesis space. In particular, solving the maximum likelihood term involves counting the number of linear extensions of posets, which in general is #P-complete. Fortunately, bound estimates suffice for model comparison, and admit incorporation into a bespoke branch-and-bound algorithm. We show that the posterior probability as defined is antitonic w.r.t. search depth for branching rules that are monotonic w.r.t. model inclusion. This allows pruning of large portions of the search space, which we show experimentally leads to rapid convergence toward optimal solutions that are consistent with manually built EKGs.
In recent years, knowledge graph embedding models have been successfully applied in the transductive setting to tackle various challenging tasks including link prediction, and query answering. Yet, the transductive setting does not allow for reasoning over unseen entities, relations, let alone numerical or non-numerical literals. Although increasing efforts are put into exploring inductive scenarios, inference over unseen entities, relations, and literals has yet to come. This limitation prohibits the existing methods from handling real-world dynamic knowledge graphs involving heterogeneous information about the world. Here, we propose a remedy to this limitation. We propose the attentive byte-pair encoding layer (BytE) to construct a triple embedding from a sequence of byte-pair encoded subword units of entities and relations. Compared to the conventional setting, BytE leads to massive feature reuse via weight tying, since it forces a knowledge graph embedding model to learn embeddings for subword units instead of entities and relations directly. Consequently, the size of the embedding matrices are not anymore bound to the unique number of entities and relations of a knowledge graph. Experimental results show that BytE improves the link prediction performance of 4 knowledge graph embedding models on datasets where the syntactic representations of triples are semantically meaningful. However, benefits of training a knowledge graph embedding model with BytE dissipate on knowledge graphs where entities and relations are represented with plain numbers or URIs. We provide an open source implementation of BytE to foster reproducible research.
Entity alignment (EA) aims to merge two knowledge graphs (KGs) by identifying equivalent entity pairs. Existing methods can be categorized into symbolic and neural models. Symbolic models, while precise, struggle with substructure heterogeneity and sparsity, whereas neural models, although effective, generally lack interpretability and cannot handle uncertainty. We propose NeuSymEA, a probabilistic neuro-symbolic framework that combines the strengths of both methods. NeuSymEA models the joint probability of all possible pairs' truth scores in a Markov random field, regulated by a set of rules, and optimizes it with the variational EM algorithm. In the E-step, a neural model parameterizes the truth score distributions and infers missing alignments. In the M-step, the rule weights are updated based on the observed and inferred alignments. To facilitate interpretability, we further design a path-ranking-based explainer upon this framework that generates supporting rules for the inferred alignments. Experiments on benchmarks demonstrate that NeuSymEA not only significantly outperforms baselines in terms of effectiveness and robustness, but also provides interpretable results.
Ontologies often lack explicit disjointness declarations between classes, despite their usefulness for sophisticated reasoning and consistency checking in Knowledge Graphs. In this study, we explore the potential of Large Language Models (LLMs) to enrich ontologies by identifying and asserting class disjointness axioms. Our approach aims at leveraging the implicit knowledge embedded in LLMs, using prompt engineering to elicit this knowledge for classifying ontological disjointness. We validate our methodology on the DBpedia ontology, focusing on open-source LLMs. Our findings suggest that LLMs, when guided by effective prompt strategies, can reliably identify disjoint class relationships, thus streamlining the process of ontology completion without extensive manual input. For comprehensive disjointness enrichment, we propose a process that takes logical relationships between disjointness and subclass statements into account in order to maintain satisfiability and reduce the number of calls to the LLM. This work provides a foundation for future applications of LLMs in automated ontology enhancement and offers insights into optimizing LLM performance through strategic prompt design. Our code is publicly available on GitHub at https://github.com/n28div/llm-disjointness.
The quality of Machine Learning (ML) models strongly depends on the input data, as such generating high-quality features is often required to improve the predictive accuracy. This process is referred to as Feature Engineering (FE). However, since manual feature engineering is time-consuming and requires case-by-case domain knowledge, Automated Feature Engineering (AutoFE) is crucial. A major challenge that remains is to generate interpretable features. To tackle this problem, we introduce SMART, a hybrid approach that uses semantic technologies to guide the generation of interpretable features through a two-step process: Exploitation and Exploration. The former uses Description Logics (DL) to reason on the semantics embedded in Knowledge Graphs (KG) to infer domain-specific features, while the latter exploits the knowledge graph to conduct a guided exploration of the search space through Deep Reinforcement Learning (DRL). Our experiments on public datasets demonstrate that SMART significantly improves prediction accuracy while ensuring a high level of interpretability.
The unification of large language models (LLMs) and knowledge graphs (KGs) has emerged as a hot topic. At the LLM+KG'24 workshop, held in conjunction with VLDB 2024 in Guangzhou, China, one of the key themes explored was important data management challenges and opportunities due to the effective interaction between LLMs and KGs. This report outlines the major directions and approaches presented by various speakers during the LLM+KG'24 workshop.
Large Language Models (LLMs) are pre-trained on large-scale corpora and excel in numerous general natural language processing (NLP) tasks, such as question answering (QA). Despite their advanced language capabilities, when it comes to domain-specific and knowledge-intensive tasks, LLMs suffer from hallucinations, knowledge cut-offs, and lack of knowledge attributions. Additionally, fine tuning LLMs' intrinsic knowledge to highly specific domains is an expensive and time consuming process. The retrieval-augmented generation (RAG) process has recently emerged as a method capable of optimization of LLM responses, by referencing them to a predetermined ontology. It was shown that using a Knowledge Graph (KG) ontology for RAG improves the QA accuracy, by taking into account relevant sub-graphs that preserve the information in a structured manner. In this paper, we introduce SMART-SLIC, a highly domain-specific LLM framework, that integrates RAG with KG and a vector store (VS) that store factual domain specific information. Importantly, to avoid hallucinations in the KG, we build these highly domain-specific KGs and VSs without the use of LLMs, but via NLP, data mining, and nonnegative tensor factorization with automatic model selection. Pairing our RAG with a domain-specific: (i) KG (containing structured information), and (ii) VS (containing unstructured information) enables the development of domain-specific chat-bots that attribute the source of information, mitigate hallucinations, lessen the need for fine-tuning, and excel in highly domain-specific question answering tasks. We pair SMART-SLIC with chain-of-thought prompting agents. The framework is designed to be generalizable to adapt to any specific or specialized domain. In this paper, we demonstrate the question answering capabilities of our framework on a corpus of scientific publications on malware analysis and anomaly detection.
This paper describes the winning solutions of all tasks in Meta KDD Cup 24 from db3 team. The challenge is to build a RAG system from web sources and knowledge graphs. We are given multiple sources for each query to help us answer the question. The CRAG challenge involves three tasks: (1) condensing information from web pages into accurate answers, (2) integrating structured data from mock knowledge graphs, and (3) selecting and integrating critical data from extensive web pages and APIs to reflect real-world retrieval challenges. Our solution for Task #1 is a framework of web or open-data retrieval and answering. The large language model (LLM) is tuned for better RAG performance and less hallucination. Task #2 and Task #3 solutions are based on a regularized API set for domain questions and the API generation method using tuned LLM. Our knowledge graph API interface extracts directly relevant information to help LLMs answer correctly. Our solution achieves 1st place on all three tasks, achieving a score of 28.4%, 42.7%, and 47.8%, respectively.
Relational representation learning transforms relational data into continuous and low-dimensional vector representations. However, vector-based representations fall short in capturing crucial properties of relational data that are complex and symbolic. We propose geometric relational embeddings, a paradigm of relational embeddings that respect the underlying symbolic structures. Specifically, this dissertation introduces various geometric relational embedding models capable of capturing: 1) complex structured patterns like hierarchies and cycles in networks and knowledge graphs; 2) logical structures in ontologies and logical constraints applicable for constraining machine learning model outputs; and 3) high-order structures between entities and relations. Our results obtained from benchmark and real-world datasets demonstrate the efficacy of geometric relational embeddings in adeptly capturing these discrete, symbolic, and structured properties inherent in relational data.
Knowledge Graphs (KGs) have been used to organize large datasets into structured, interconnected information, enhancing data analytics across various fields. In the legislative context, one potential natural application of KGs is modeling the intricate set of interconnections that link laws and their articles with each other and the broader legislative context. At the same time, the rise of large language models (LLMs) such as GPT has opened new opportunities in legal applications, such as text generation and document drafting. Despite their potential, the use of LLMs in legislative contexts is critical since it requires the absence of hallucinations and reliance on up-to-date information, as new laws are published on a daily basis. This work investigates how Legislative Knowledge Graphs and LLMs can synergize and support legislative processes. We address three key questions: the benefits of using KGs for legislative systems, how LLM can support legislative activities by ensuring an accurate output, and how we can allow non-technical users to use such technologies in their activities. To this aim, we develop Legis AI Platform, an interactive platform focused on Italian legislation that enhances the possibility of conducting legislative analysis and that aims to support lawmaking activities.