This paper presents a novel approach for vibration control of satellite-based flexible beam-type antennas using Nonlinear Model Predictive Control (NMPC) and Deep Learning techniques. The developed control system leverages piezoelectric (PZT) actuators and sensors to manage the coupled attitude and structural dynamics of the satellite, improving precision and stability. We propose a detailed coupled dynamics model that integrates both satellite attitude and beam structural dynamics, considering the effects of PZT-based actuators. Through MATLAB/Simulink simulations, we demonstrate the effectiveness of the combined NMPC and Deep Learning framework in reducing structural vibrations, achieving faster response times, and enhancing overall control accuracy. The results indicate that the proposed system provides a robust solution for controlling flexible beam-type satellite antennas in space environments.
Deep learning is an advanced technology that relies on large-scale data and complex models for feature extraction and pattern recognition. It has been widely applied across various fields, including computer vision, natural language processing, and speech recognition. In recent years, deep learning has demonstrated significant potential in the realm of proteomics informatics, particularly in deciphering complex biological information. The introduction of this technology not only accelerates the processing speed of protein data but also enhances the accuracy of predictions regarding protein structure and function. This provides robust support for both fundamental biology research and applied biotechnological studies. Currently, deep learning is primarily focused on applications such as protein sequence analysis, three-dimensional structure prediction, functional annotation, and the construction of protein interaction networks. These applications offer numerous advantages to proteomic research. Despite its growing prevalence in this field, deep learning faces several challenges including data scarcity, insufficient model interpretability, and computational complexity; these factors hinder its further advancement within proteomics. This paper comprehensively reviews the applications of deep learning in proteomics along with the challenges it encounters. The aim is to provide a systematic theoretical discussion and practical basis for research in this domain to facilitate ongoing development and innovation of deep learning technologies within proteomics.
One of the major sources of uncertainty in the current generation of Global Climate Models (GCMs) is the representation of sub-grid scale physical processes. Over the years, a series of deep-learning-based parameterization schemes have been developed and tested on both idealized and real-geography GCMs. However, datasets on which previous deep-learning models were trained either contain limited variables or have low spatial-temporal coverage, which can not fully simulate the parameterization process. Additionally, these schemes rely on classical architectures while the latest attention mechanism used in Transformer models remains unexplored in this field. In this paper, we propose Paraformer, a "memory-aware" Transformer-based model on ClimSim, the largest dataset ever created for climate parameterization. Our results demonstrate that the proposed model successfully captures the complex non-linear dependencies in the sub-grid scale variables and outperforms classical deep-learning architectures. This work highlights the applicability of the attenuation mechanism in this field and provides valuable insights for developing future deep-learning-based climate parameterization schemes.
Test Input Generators (TIGs) are crucial to assess the ability of Deep Learning (DL) image classifiers to provide correct predictions for inputs beyond their training and test sets. Recent advancements in Generative AI (GenAI) models have made them a powerful tool for creating and manipulating synthetic images, although these advancements also imply increased complexity and resource demands for training. In this work, we benchmark and combine different GenAI models with TIGs, assessing their effectiveness, efficiency, and quality of the generated test images, in terms of domain validity and label preservation. We conduct an empirical study involving three different GenAI architectures (VAEs, GANs, Diffusion Models), five classification tasks of increasing complexity, and 364 human evaluations. Our results show that simpler architectures, such as VAEs, are sufficient for less complex datasets like MNIST. However, when dealing with feature-rich datasets, such as ImageNet, more sophisticated architectures like Diffusion Models achieve superior performance by generating a higher number of valid, misclassification-inducing inputs.
Accurate uncertainty information associated with essential climate variables (ECVs) is crucial for reliable climate modeling and understanding the spatiotemporal evolution of the Earth system. In recent years, geoscience and climate scientists have benefited from rapid progress in deep learning to advance the estimation of ECV products with improved accuracy. However, the quantification of uncertainties associated with the output of such deep learning models has yet to be thoroughly adopted. This survey explores the types of uncertainties associated with ECVs estimated from deep learning and the techniques to quantify them. The focus is on highlighting the importance of quantifying uncertainties inherent in ECV estimates, considering the dynamic and multifaceted nature of climate data. The survey starts by clarifying the definition of aleatoric and epistemic uncertainties and their roles in a typical satellite observation processing workflow, followed by bridging the gap between conventional statistical and deep learning views on uncertainties. Then, we comprehensively review the existing techniques for quantifying uncertainties associated with deep learning algorithms, focusing on their application in ECV studies. The specific need for modification to fit the requirements from both the Earth observation side and the deep learning side in such interdisciplinary tasks is discussed. Finally, we demonstrate our findings with two ECV examples, snow cover and terrestrial water storage, and provide our perspectives for future research.
In a lot of scientific problems, there is the need to generate data through the running of an extensive number of experiments. Further, some tasks require constant human intervention. We consider the problem of crack detection in steel plates. The way in which this generally happens is through humans looking at an image of the thermogram generated by heating the plate and classifying whether it is cracked or not. There has been a rise in the use of Artificial Intelligence (AI) based methods which try to remove the requirement of a human from this loop by using algorithms such as Convolutional Neural Netowrks (CNN)s as a proxy for the detection process. The issue is that CNNs and other vision models are generally very data-hungry and require huge amounts of data before they can start performing well. This data generation process is not very easy and requires innovation in terms of mechanical and electronic design of the experimental setup. It further requires massive amount of time and energy, which is difficult in resource-constrained scenarios. We try to solve exactly this problem, by creating a synthetic data generation pipeline based on Finite Element Simulations. We employ data augmentation techniques on this data to further increase the volume and diversity of data generated. The working of this concept is shown via performing inference on fine-tuned vision models and we have also validated the results by checking if our approach translates to realistic experimental data. We show the conditions where this translation is successful and how we can go about achieving that.
Lightweight design, as a key approach to mitigate disparity between computational requirements of deep learning models and hardware performance, plays a pivotal role in advancing application of deep learning technologies on mobile and embedded devices, alongside rapid development of smart home, telemedicine, and autonomous driving. With its outstanding feature extracting capabilities, Deep Convolutional Neural Networks (DCNNs) have demonstrated superior performance in computer vision tasks. However, high computational costs and large network architectures severely limit the widespread application of DCNNs on resource-constrained hardware platforms such as smartphones, robots, and IoT devices. This paper reviews lightweight design strategies for DCNNs and examines recent research progress in both lightweight architectural design and model compression. Additionally, this paper discusses current limitations in this field of research and propose prospects for future directions, aiming to provide valuable guidance and reflection for lightweight design philosophy on deep neural networks in the field of computer vision.
This research presents an innovative approach to cancer diagnosis and prediction using explainable Artificial Intelligence (XAI) and deep learning techniques. With cancer causing nearly 10 million deaths globally in 2020, early and accurate diagnosis is crucial. Traditional methods often face challenges in cost, accuracy, and efficiency. Our study develops an AI model that provides precise outcomes and clear insights into its decision-making process, addressing the "black box" problem of deep learning models. By employing XAI techniques, we enhance interpretability and transparency, building trust among healthcare professionals and patients. Our approach leverages neural networks to analyse extensive datasets, identifying patterns for cancer detection. This model has the potential to revolutionise diagnosis by improving accuracy, accessibility, and clarity in medical decision-making, possibly leading to earlier detection and more personalised treatment strategies. Furthermore, it could democratise access to high-quality diagnostics, particularly in resource-limited settings, contributing to global health equity. The model's applications extend beyond cancer diagnosis, potentially transforming various aspects of medical decision-making and saving millions of lives worldwide.
Seagrass meadows play a crucial role in marine ecosystems, providing benefits such as carbon sequestration, water quality improvement, and habitat provision. Monitoring the distribution and abundance of seagrass is essential for environmental impact assessments and conservation efforts. However, the current manual methods of analyzing underwater video data to assess seagrass coverage are time-consuming and subjective. This work explores the use of deep learning models to automate the process of seagrass detection and coverage estimation from underwater video data. We create a new dataset of over 8,300 annotated underwater images, and subsequently evaluate several deep learning architectures, including ResNet, InceptionNetV3, DenseNet, and Vision Transformer for the task of binary classification on the presence and absence of seagrass by transfer learning. The results demonstrate that deep learning models, particularly Vision Transformers, can achieve high performance in predicting eelgrass presence, with AUROC scores exceeding 0.95 on the final test dataset. The application of underwater image enhancement further improved the models' prediction capabilities. Furthermore, we introduce a novel approach for estimating seagrass coverage from video data, showing promising preliminary results that align with expert manual labels, and indicating potential for consistent and scalable monitoring. The proposed methodology allows for the efficient processing of large volumes of video data, enabling the acquisition of much more detailed information on seagrass distributions in comparison to current manual methods. This information is crucial for environmental impact assessments and monitoring programs, as seagrasses are important indicators of coastal ecosystem health. This project demonstrates the value that deep learning can bring to the field of marine ecology and environmental monitoring.
The sparse and spatio-temporally discontinuous nature of precipitation data presents significant challenges for simulation and statistical processing for bias correction and downscaling. These include incorrect representation of intermittency and extreme values (critical for hydrology applications), Gibbs phenomenon upon regridding, and lack of fine scales details. To address these challenges, a common approach is to transform the precipitation variable nonlinearly into one that is more malleable. In this work, we explore how deep learning can be used to generate a smooth, spatio-temporally continuous variable as a proxy for simulation of precipitation data. We develop a normally distributed field called pseudo-precipitation (PP) as an alternative for simulating precipitation. The practical applicability of this variable is investigated by applying it for downscaling precipitation from \(1\degree\) (\(\sim\) 100 km) to \(0.25\degree\) (\(\sim\) 25 km).
We present JaxPP, a system for efficiently scaling the training of large deep learning models with flexible pipeline parallelism. We introduce a seamless programming model that allows implementing user-defined pipeline schedules for gradient accumulation. JaxPP automatically distributes tasks, corresponding to pipeline stages, over a cluster of nodes and automatically infers the communication among them. We implement a MPMD runtime for asynchronous execution of SPMD tasks. The pipeline parallelism implementation of JaxPP improves hardware utilization by up to $1.11\times$ with respect to the best performing SPMD configuration.
Monitoring growth behavior of maize plants such as the development of ears can give key insights into the plant's health and development. Traditionally, the measurement of the angle of ears is performed manually, which can be time-consuming and prone to human error. To address these challenges, this paper presents a computer vision-based system for detecting and tracking ears of corn in an image sequence. The proposed system could accurately detect, track, and predict the ear's orientation, which can be useful in monitoring their growth behavior. This can significantly save time compared to manual measurement and enables additional areas of ear orientation research and potential increase in efficiencies for maize production. Using an object detector with keypoint detection, the algorithm proposed could detect 90 percent of all ears. The cardinal estimation had a mean absolute error (MAE) of 18 degrees, compared to a mean 15 degree difference between two people measuring by hand. These results demonstrate the feasibility of using computer vision techniques for monitoring maize growth and can lead to further research in this area.
Detecting and tracking code clones can ease various software development and maintenance tasks when changes in a code fragment should be propagated over all its copies. Several deep learning-based clone detection models have appeared in the literature for detecting syntactic and semantic clones, widely evaluated with the BigCloneBench dataset. However, class imbalance and the small number of semantic clones make BigCloneBench less ideal for interpreting model performance. Researchers also use other datasets such as GoogleCodeJam, OJClone, and SemanticCloneBench to understand model generalizability. To overcome the limitations of existing datasets, the GPT-assisted semantic and cross-language clone dataset GPTCloneBench has been released. However, how these models compare across datasets remains unclear. In this paper, we propose a multi-step evaluation approach for five state-of-the-art clone detection models leveraging existing benchmark datasets, including GPTCloneBench, and using mutation operators to study model ability. Specifically, we examine three highly-performing single-language models (ASTNN, GMN, CodeBERT) on BigCloneBench, SemanticCloneBench, and GPTCloneBench, testing their robustness with mutation operations. Additionally, we compare them against cross-language models (C4, CLCDSA) known for detecting semantic clones. While single-language models show high F1 scores for BigCloneBench, their performance on SemanticCloneBench varies (up to 20%). Interestingly, the cross-language model (C4) shows superior performance (around 7%) on SemanticCloneBench over other models and performs similarly on BigCloneBench and GPTCloneBench. On mutation-based datasets, C4 has more robust performance (less than 1% difference) compared to single-language models, which show high variability.
Although Answer Set Programming (ASP) allows constraining neural-symbolic (NeSy) systems, its employment is hindered by the prohibitive costs of computing stable models and the CPU-bound nature of state-of-the-art solvers. To this end, we propose Answer Set Networks (ASN), a NeSy solver. Based on Graph Neural Networks (GNN), ASNs are a scalable approach to ASP-based Deep Probabilistic Logic Programming (DPPL). Specifically, we show how to translate ASPs into ASNs and demonstrate how ASNs can efficiently solve the encoded problem by leveraging GPU's batching and parallelization capabilities. Our experimental evaluations demonstrate that ASNs outperform state-of-the-art CPU-bound NeSy systems on multiple tasks. Simultaneously, we make the following two contributions based on the strengths of ASNs. Namely, we are the first to show the finetuning of Large Language Models (LLM) with DPPLs, employing ASNs to guide the training with logic. Further, we show the "constitutional navigation" of drones, i.e., encoding public aviation laws in an ASN for routing Unmanned Aerial Vehicles in uncertain environments.
In healthcare, the integration of multimodal data is pivotal for developing comprehensive diagnostic and predictive models. However, managing missing data remains a significant challenge in real-world applications. We introduce MARIA (Multimodal Attention Resilient to Incomplete datA), a novel transformer-based deep learning model designed to address these challenges through an intermediate fusion strategy. Unlike conventional approaches that depend on imputation, MARIA utilizes a masked self-attention mechanism, which processes only the available data without generating synthetic values. This approach enables it to effectively handle incomplete datasets, enhancing robustness and minimizing biases introduced by imputation methods. We evaluated MARIA against 10 state-of-the-art machine learning and deep learning models across 8 diagnostic and prognostic tasks. The results demonstrate that MARIA outperforms existing methods in terms of performance and resilience to varying levels of data incompleteness, underscoring its potential for critical healthcare applications.
Uncertainty quantification (UQ) methods play an important role in reducing errors in weather forecasting. Conventional approaches in UQ for weather forecasting rely on generating an ensemble of forecasts from physics-based simulations to estimate the uncertainty. However, it is computationally expensive to generate many forecasts to predict real-time extreme weather events. Evidential Deep Learning (EDL) is an uncertainty-aware deep learning approach designed to provide confidence about its predictions using only one forecast. It treats learning as an evidence acquisition process where more evidence is interpreted as increased predictive confidence. We apply EDL to storm forecasting using real-world weather datasets and compare its performance with traditional methods. Our findings indicate that EDL not only reduces computational overhead but also enhances predictive uncertainty. This method opens up novel opportunities in research areas such as climate risk assessment, where quantifying the uncertainty about future climate is crucial.
Data-driven deformable image registration methods predominantly rely on operations that process grid-like inputs. However, applying deformable transformations to an image results in a warped space that deviates from a rigid grid structure. Consequently, data-driven approaches with sequential deformations have to apply grid resampling operations between each deformation step. While artifacts caused by resampling are negligible in high-resolution images, the resampling of sparse, high-dimensional feature grids introduces errors that affect the deformation modeling process. Taking inspiration from Lagrangian reference frames of deformation fields, our work introduces a novel paradigm for data-driven deformable image registration that utilizes geometric deep-learning principles to model deformations without grid requirements. Specifically, we model image features as a set of nodes that freely move in Euclidean space, update their coordinates under graph operations, and dynamically readjust their local neighborhoods. We employ this formulation to construct a multi-resolution deformable registration model, where deformation layers iteratively refine the overall transformation at each resolution without intermediate resampling operations on the feature grids. We investigate our method's ability to fully deformably capture large deformations across a number of medical imaging registration tasks. In particular, we apply our approach (GeoReg) to the registration of inter-subject brain MR images and inhale-exhale lung CT images, showing on par performance with the current state-of-the-art methods. We believe our contribution open up avenues of research to reduce the black-box nature of current learned registration paradigms by explicitly modeling the transformation within the architecture.
Image anomaly detection (IAD) is essential in applications such as industrial inspection, medical imaging, and security. Despite the progress achieved with deep learning models like Deep Semi-Supervised Anomaly Detection (DeepSAD), these models remain susceptible to backdoor attacks, presenting significant security challenges. In this paper, we introduce BadSAD, a novel backdoor attack framework specifically designed to target DeepSAD models. Our approach involves two key phases: trigger injection, where subtle triggers are embedded into normal images, and latent space manipulation, which positions and clusters the poisoned images near normal images to make the triggers appear benign. Extensive experiments on benchmark datasets validate the effectiveness of our attack strategy, highlighting the severe risks that backdoor attacks pose to deep learning-based anomaly detection systems.
Liver cancer is a leading cause of cancer-related mortality worldwide, with its high genetic heterogeneity complicating diagnosis and treatment. This study introduces DLSOM, a deep learning framework utilizing stacked autoencoders to analyze the complete somatic mutation landscape of 1,139 liver cancer samples, covering 20,356 protein-coding genes. By transforming high-dimensional mutation data into three low-dimensional features, DLSOM enables robust clustering and identifies five distinct liver cancer subtypes with unique mutational, functional, and biological profiles. Subtypes SC1 and SC2 exhibit higher mutational loads, while SC3 has the lowest, reflecting mutational heterogeneity. Novel and COSMIC-associated mutational signatures reveal subtype-specific molecular mechanisms, including links to hypermutation and chemotherapy resistance. Functional analyses further highlight the biological relevance of each subtype. This comprehensive framework advances precision medicine in liver cancer by enabling the development of subtype-specific diagnostics, biomarkers, and therapies, showcasing the potential of deep learning in addressing cancer complexity.
The discovery of novel superconducting materials is a longstanding challenge in materials science, with a wealth of potential for applications in energy, transportation, and computing. Recent advances in artificial intelligence (AI) have enabled expediting the search for new materials by efficiently utilizing vast materials databases. In this study, we developed an approach based on deep learning (DL) to predict new superconducting materials. We have synthesized a compound derived from our DL network and confirmed its superconducting properties in agreement with our prediction. Our approach is also compared to previous work based on random forests (RFs). In particular, RFs require knowledge of the chem-ical properties of the compound, while our neural net inputs depend solely on the chemical composition. With the help of hints from our network, we discover a new ternary compound $\textrm{Mo}_{20}\textrm{Re}_{6}\textrm{Si}_{4}$, which becomes superconducting below 5.4 K. We further discuss the existing limitations and challenges associated with using AI to predict and, along with potential future research directions.