The tumor microenvironment (TME) plays a crucial role in cancer progression and treatment response, yet current methods for its comprehensive analysis in H&E-stained tissue slides face significant limitations in the diversity of tissue cell types and accuracy. Here, we present PAGET (Pathological image segmentation via AGgrEgated Teachers), a new knowledge distillation approach that integrates multiple segmentation models while considering the hierarchical nature of cell types in the TME. By leveraging a unique dataset created through immunohistochemical restaining techniques and existing segmentation models, PAGET enables simultaneous identification and classification of 14 key TME components. We demonstrate PAGET's ability to perform rapid, comprehensive TME segmentation across various tissue types and medical institutions, advancing the quantitative analysis of tumor microenvironments. This method represents a significant step forward in enhancing our understanding of cancer biology and supporting precise clinical decision-making from large-scale histopathology images.
Convolutional neural networks (CNNs) excel in local feature extraction while Transformers are superior in processing global semantic information. By leveraging the strengths of both, hybrid Transformer-CNN networks have become the major architectures in medical image segmentation tasks. However, existing hybrid methods still suffer deficient learning of local semantic features due to the fixed receptive fields of convolutions, and also fall short in effectively integrating local and long-range dependencies. To address these issues, we develop a new method PARF-Net to integrate convolutions of Pixel-wise Adaptive Receptive Fields (Conv-PARF) into hybrid Network for medical image segmentation. The Conv-PARF is introduced to cope with inter-pixel semantic differences and dynamically adjust convolutional receptive fields for each pixel, thus providing distinguishable features to disentangle the lesions with varying shapes and scales from the background. The features derived from the Conv-PARF layers are further processed using hybrid Transformer-CNN blocks under a lightweight manner, to effectively capture local and long-range dependencies, thus boosting the segmentation performance. By assessing PARF-Net on four widely used medical image datasets including MoNuSeg, GlaS, DSB2018 and multi-organ Synapse, we showcase the advantages of our method over the state-of-the-arts. For instance, PARF-Net achieves 84.27% mean Dice on the Synapse dataset, surpassing existing methods by a large margin.
Vision Transformers (ViTs) have shown promise in medical image semantic segmentation (MISS) by capturing long-range correlations. However, ViTs often struggle to model local spatial information effectively, which is essential for accurately segmenting fine anatomical details, particularly when applied to small datasets without extensive pre-training. We introduce Gabor and Laplacian of Gaussian Convolutional Swin Network (GLoG-CSUnet), a novel architecture enhancing Transformer-based models by incorporating learnable radiomic features. This approach integrates dynamically adaptive Gabor and Laplacian of Gaussian (LoG) filters to capture texture, edge, and boundary information, enhancing the feature representation processed by the Transformer model. Our method uniquely combines the long-range dependency modeling of Transformers with the texture analysis capabilities of Gabor and LoG features. Evaluated on the Synapse multi-organ and ACDC cardiac segmentation datasets, GLoG-CSUnet demonstrates significant improvements over state-of-the-art models, achieving a 1.14% increase in Dice score for Synapse and 0.99% for ACDC, with minimal computational overhead (only 15 and 30 additional parameters, respectively). GLoG-CSUnet's flexible design allows integration with various base models, offering a promising approach for incorporating radiomics-inspired feature extraction in Transformer architectures for medical image analysis. The code implementation is available on GitHub at: https://github.com/HAAIL/GLoG-CSUnet.
Medical image segmentation is a critical task in medical imaging analysis. Traditional CNN-based methods struggle with modeling long-range dependencies, while Transformer-based models, despite their success, suffer from quadratic computational complexity. To address these limitations, we propose KM-UNet, a novel U-shaped network architecture that combines the strengths of Kolmogorov-Arnold Networks (KANs) and state-space models (SSMs). KM-UNet leverages the Kolmogorov-Arnold representation theorem for efficient feature representation and SSMs for scalable long-range modeling, achieving a balance between accuracy and computational efficiency. We evaluate KM-UNet on five benchmark datasets: ISIC17, ISIC18, CVC, BUSI, and GLAS. Experimental results demonstrate that KM-UNet achieves competitive performance compared to state-of-the-art methods in medical image segmentation tasks. To the best of our knowledge, KM-UNet is the first medical image segmentation framework integrating KANs and SSMs. This work provides a valuable baseline and new insights for the development of more efficient and interpretable medical image segmentation systems. The code is open source at https://github.com/2760613195/KM_UNet Keywords:KAN,Manba, state-space models,UNet, Medical image segmentation, Deep learning
Image segmentation is a vital task for providing human assistance and enhancing autonomy in our daily lives. In particular, RGB-D segmentation-leveraging both visual and depth cues-has attracted increasing attention as it promises richer scene understanding than RGB-only methods. However, most existing efforts have primarily focused on semantic segmentation and thus leave a critical gap. There is a relative scarcity of instance-level RGB-D segmentation datasets, which restricts current methods to broad category distinctions rather than fully capturing the fine-grained details required for recognizing individual objects. To bridge this gap, we introduce three RGB-D instance segmentation benchmarks, distinguished at the instance level. These datasets are versatile, supporting a wide range of applications from indoor navigation to robotic manipulation. In addition, we present an extensive evaluation of various baseline models on these benchmarks. This comprehensive analysis identifies both their strengths and shortcomings, guiding future work toward more robust, generalizable solutions. Finally, we propose a simple yet effective method for RGB-D data integration. Extensive evaluations affirm the effectiveness of our approach, offering a robust framework for advancing toward more nuanced scene understanding.
Weakly-supervised medical image segmentation is gaining traction as it requires only rough annotations rather than accurate pixel-to-pixel labels, thereby reducing the workload for specialists. Although some progress has been made, there is still a considerable performance gap between the label-efficient methods and fully-supervised one, which can be attributed to the uncertainty nature of these weak labels. To address this issue, we propose a novel weak annotation method coupled with its learning framework EAUWSeg to eliminate the annotation uncertainty. Specifically, we first propose the Bounded Polygon Annotation (BPAnno) by simply labeling two polygons for a lesion. Then, the tailored learning mechanism that explicitly treat bounded polygons as two separated annotations is proposed to learn invariant feature by providing adversarial supervision signal for model training. Subsequently, a confidence-auxiliary consistency learner incorporates with a classification-guided confidence generator is designed to provide reliable supervision signal for pixels in uncertain region by leveraging the feature presentation consistency across pixels within the same category as well as class-specific information encapsulated in bounded polygons annotation. Experimental results demonstrate that EAUWSeg outperforms existing weakly-supervised segmentation methods. Furthermore, compared to fully-supervised counterparts, the proposed method not only delivers superior performance but also costs much less annotation workload. This underscores the superiority and effectiveness of our approach.
Medical image segmentation demands the aggregation of global and local feature representations, posing a challenge for current methodologies in handling both long-range and short-range feature interactions. Recently, vision mamba (ViM) models have emerged as promising solutions for addressing model complexities by excelling in long-range feature iterations with linear complexity. However, existing ViM approaches overlook the importance of preserving short-range local dependencies by directly flattening spatial tokens and are constrained by fixed scanning patterns that limit the capture of dynamic spatial context information. To address these challenges, we introduce a simple yet effective method named context clustering ViM (CCViM), which incorporates a context clustering module within the existing ViM models to segment image tokens into distinct windows for adaptable local clustering. Our method effectively combines long-range and short-range feature interactions, thereby enhancing spatial contextual representations for medical image segmentation tasks. Extensive experimental evaluations on diverse public datasets, i.e., Kumar, CPM17, ISIC17, ISIC18, and Synapse demonstrate the superior performance of our method compared to current state-of-the-art methods. Our code can be found at https://github.com/zymissy/CCViM.
This paper provides a novel 3D medical image segmentation model structure called nnY-Net. This name comes from the fact that our model adds a cross-attention module at the bottom of the U-net structure to form a Y structure. We integrate the advantages of the two latest SOTA models, MedNeXt and SwinUNETR, and use Swin Transformer as the encoder and ConvNeXt as the decoder to innovatively design the Swin-NeXt structure. Our model uses the lowest-level feature map of the encoder as Key and Value and uses patient features such as pathology and treatment information as Query to calculate the attention weights in a Cross Attention module. Moreover, we simplify some pre- and post-processing as well as data enhancement methods in 3D image segmentation based on the dynUnet and nnU-net frameworks. We integrate our proposed Swin-NeXt with Cross-Attention framework into this framework. Last, we construct a DiceFocalCELoss to improve the training efficiency for the uneven data convergence of voxel classification.
Accurate and robust ultrasound image segmentation is critical for computer-aided diagnostic systems. Nevertheless, the inherent challenges of ultrasound imaging, such as blurry boundaries and speckle noise, often cause traditional segmentation methods to struggle with performance. Despite recent advancements in universal image segmentation, such as the Segment Anything Model, existing interactive segmentation methods still suffer from inefficiency and lack of specialization. These methods rely heavily on extensive accurate manual or random sampling prompts for interaction, necessitating numerous prompts and iterations to reach satisfactory performance. In response to this challenge, we propose the Evidential Uncertainty-Guided Interactive Segmentation (EUGIS), an end-to-end, efficient tiered interactive segmentation paradigm based on evidential uncertainty estimation for ultrasound image segmentation. Specifically, EUGIS harnesses evidence-based uncertainty estimation, grounded in Dempster-Shafer theory and Subjective Logic, to gauge the level of uncertainty in the predictions of model for different regions. By prioritizing sampling the high-uncertainty region, our method can effectively simulate the interactive behavior of well-trained radiologists, enhancing the targeted of sampling while reducing the number of prompts and iterations required.Additionally, we propose a trainable calibration mechanism for uncertainty estimation, which can further optimize the boundary between certainty and uncertainty, thereby enhancing the confidence of uncertainty estimation.
The goal of referring remote sensing image segmentation (RRSIS) is to extract specific pixel-level regions within an aerial image via a natural language expression. Recent advancements, particularly Transformer-based fusion designs, have demonstrated remarkable progress in this domain. However, existing methods primarily focus on refining visual features using language-aware guidance during the cross-modal fusion stage, neglecting the complementary vision-to-language flow. This limitation often leads to irrelevant or suboptimal representations. In addition, the diverse spatial scales of ground objects in aerial images pose significant challenges to the visual perception capabilities of existing models when conditioned on textual inputs. In this paper, we propose an innovative framework called Scale-wise Bidirectional Alignment Network (SBANet) to address these challenges for RRSIS. Specifically, we design a Bidirectional Alignment Module (BAM) with learnable query tokens to selectively and effectively represent visual and linguistic features, emphasizing regions associated with key tokens. BAM is further enhanced with a dynamic feature selection block, designed to provide both macro- and micro-level visual features, preserving global context and local details to facilitate more effective cross-modal interaction. Furthermore, SBANet incorporates a text-conditioned channel and spatial aggregator to bridge the gap between the encoder and decoder, enhancing cross-scale information exchange in complex aerial scenarios. Extensive experiments demonstrate that our proposed method achieves superior performance in comparison to previous state-of-the-art methods on the RRSIS-D and RefSegRS datasets, both quantitatively and qualitatively. The code will be released after publication.
Recently released open-source pre-trained foundational image segmentation and object detection models (SAM2+GroundingDINO) allow for geometrically consistent segmentation of objects of interest in multi-view 2D images. Users can use text-based or click-based prompts to segment objects of interest without requiring labeled training datasets. Gaussian Splatting allows for the learning of the 3D representation of a scene's geometry and radiance based on 2D images. Combining Google Earth Studio, SAM2+GroundingDINO, 2D Gaussian Splatting, and our improvements in mask refinement based on morphological operations and contour simplification, we created a pipeline to extract the 3D mesh of any building based on its name, address, or geographic coordinates.
Accurate identification and localisation of brain tumours from medical images remain challenging due to tumour variability and structural complexity. Convolutional Neural Networks (CNNs), particularly ResNet and Unet, have made significant progress in medical image processing, offering robust capabilities for image segmentation. However, limited research has explored their integration with human-computer interaction (HCI) to enhance usability, interpretability, and clinical applicability. This paper introduces ResUnet++, an advanced hybrid model combining ResNet and Unet++, designed to improve tumour detection and localisation while fostering seamless interaction between clinicians and medical imaging systems. ResUnet++ integrates residual blocks in both the downsampling and upsampling phases, ensuring critical image features are preserved. By incorporating HCI principles, the model provides intuitive, real-time feedback, enabling clinicians to visualise and interact with tumour localisation results effectively. This fosters informed decision-making and supports workflow efficiency in clinical settings. We evaluated ResUnet++ on the LGG Segmentation Dataset, achieving a Jaccard Loss of 98.17%. The results demonstrate its strong segmentation performance and potential for real-world applications. By bridging advanced medical imaging techniques with HCI, ResUnet++ offers a foundation for developing interactive diagnostic tools, improving clinician trust, decision accuracy, and patient outcomes, and advancing the integration of AI in healthcare workflows.
Deep learning models (DLMs) frequently achieve accurate segmentation and classification of tumors from medical images. However, DLMs lacking feedback on their image segmentation mechanisms, such as Dice coefficients and confidence in their performance, face challenges when processing previously unseen images in real-world clinical settings. Uncertainty estimates to identify DLM predictions at the cellular or single-pixel level that require clinician review can enhance trust. However, their deployment requires significant computational resources. This study reports two DLMs, one trained from scratch and another based on transfer learning, with Monte Carlo dropout or Bayes-by-backprop uncertainty estimations to segment lesions from the publicly available The International Skin Imaging Collaboration-19 dermoscopy image database with cancerous lesions. A novel approach to compute pixel-by-pixel uncertainty estimations of DLM segmentation performance in multiple clinical regions from a single dermoscopy image with corresponding Dice scores is reported for the first time. Image-level uncertainty maps demonstrated correspondence between imperfect DLM segmentation and high uncertainty levels in specific skin tissue regions, with or without lesions. Four new linear regression models that can predict the Dice performance of DLM segmentation using constants and uncertainty measures, either individually or in combination from lesions, tissue structures, and non-tissue pixel regions critical for clinical diagnosis and prognostication in skin images (Spearman's correlation, p < 0.05), are reported for the first time for low-compute uncertainty estimation workflows.
Hepatic vessels in computed tomography scans often suffer from image fragmentation and noise interference, making it difficult to maintain vessel integrity and posing significant challenges for vessel segmentation. To address this issue, we propose an innovative model: SegKAN. First, we improve the conventional embedding module by adopting a novel convolutional network structure for image embedding, which smooths out image noise and prevents issues such as gradient explosion in subsequent stages. Next, we transform the spatial relationships between Patch blocks into temporal relationships to solve the problem of capturing positional relationships between Patch blocks in traditional Vision Transformer models. We conducted experiments on a Hepatic vessel dataset, and compared to the existing state-of-the-art model, the Dice score improved by 1.78%. These results demonstrate that the proposed new structure effectively enhances the segmentation performance of high-resolution extended objects. Code will be available at https://github.com/goblin327/SegKAN
In medical image analysis, multi-organ semi-supervised segmentation faces challenges such as insufficient labels and low contrast in soft tissues. To address these issues, existing studies typically employ semi-supervised segmentation techniques using pseudo-labeling and consistency regularization. However, these methods mainly rely on individual data samples for training, ignoring the rich neighborhood information present in the feature space. In this work, we argue that supervisory information can be directly extracted from the geometry of the feature space. Inspired by the density-based clustering hypothesis, we propose using feature density to locate sparse regions within feature clusters. Our goal is to increase intra-class compactness by addressing sparsity issues. To achieve this, we propose a Density-Aware Contrastive Learning (DACL) strategy, pushing anchored features in sparse regions towards cluster centers approximated by high-density positive samples, resulting in more compact clusters. Specifically, our method constructs density-aware neighbor graphs using labeled and unlabeled data samples to estimate feature density and locate sparse regions. We also combine label-guided co-training with density-guided geometric regularization to form complementary supervision for unlabeled data. Experiments on the Multi-Organ Segmentation Challenge dataset demonstrate that our proposed method outperforms state-of-the-art methods, highlighting its efficacy in medical image segmentation tasks.
Tissue semantic segmentation is one of the key tasks in computational pathology. To avoid the expensive and laborious acquisition of pixel-level annotations, a wide range of studies attempt to adopt the class activation map (CAM), a weakly-supervised learning scheme, to achieve pixel-level tissue segmentation. However, CAM-based methods are prone to suffer from under-activation and over-activation issues, leading to poor segmentation performance. To address this problem, we propose a novel weakly-supervised semantic segmentation framework for histopathological images based on image-mixing synthesis and consistency regularization, dubbed HisynSeg. Specifically, synthesized histopathological images with pixel-level masks are generated for fully-supervised model training, where two synthesis strategies are proposed based on Mosaic transformation and B\'ezier mask generation. Besides, an image filtering module is developed to guarantee the authenticity of the synthesized images. In order to further avoid the model overfitting to the occasional synthesis artifacts, we additionally propose a novel self-supervised consistency regularization, which enables the real images without segmentation masks to supervise the training of the segmentation model. By integrating the proposed techniques, the HisynSeg framework successfully transforms the weakly-supervised semantic segmentation problem into a fully-supervised one, greatly improving the segmentation accuracy. Experimental results on three datasets prove that the proposed method achieves a state-of-the-art performance. Code is available at https://github.com/Vison307/HisynSeg.
Accurate segmentation of wind turbine blade (WTB) images is critical for effective assessments, as it directly influences the performance of automated damage detection systems. Despite advancements in large universal vision models, these models often underperform in domain-specific tasks like WTB segmentation. To address this, we extend Intrinsic LoRA for image segmentation, and propose a novel dual-space augmentation strategy that integrates both image-level and latent-space augmentations. The image-space augmentation is achieved through linear interpolation between image pairs, while the latent-space augmentation is accomplished by introducing a noise-based latent probabilistic model. Our approach significantly boosts segmentation accuracy, surpassing current state-of-the-art methods in WTB image segmentation.
In this article, an active contours without edges (ACWE)-based algorithm has been proposed for the detection of solar filaments in H-alpha full-disk solar images. The overall algorithm consists of three main steps of image processing. These are image pre-processing, image segmentation, and image post-processing. Here in the work, contours are initialized on the solar image and allowed to deform based on the energy function. As soon as the contour reaches the boundary of the desired object, the energy function gets reduced, and the contour stops evolving. The proposed algorithm has been applied to few benchmark datasets and has been compared with the classical technique of object detection. The results analysis indicates that the proposed algorithm outperforms the results obtained using the existing classical algorithm of object detection.
As the successor to the Segment Anything Model (SAM), the Segment Anything Model 2 (SAM2) not only improves performance in image segmentation but also extends its capabilities to video segmentation. However, its effectiveness in segmenting rare objects that seldom appear in videos remains underexplored. In this study, we evaluate SAM2 on three distinct video segmentation tasks: Video Shadow Detection (VSD) and Video Mirror Detection (VMD). Specifically, we use ground truth point or mask prompts to initialize the first frame and then predict corresponding masks for subsequent frames. Experimental results show that SAM2's performance on these tasks is suboptimal, especially when point prompts are used, both quantitatively and qualitatively. Code is available at \url{https://github.com/LeipingJie/SAM2Video}
Dichotomous Image Segmentation (DIS) tasks require highly precise annotations, and traditional dataset creation methods are labor intensive, costly, and require extensive domain expertise. Although using synthetic data for DIS is a promising solution to these challenges, current generative models and techniques struggle with the issues of scene deviations, noise-induced errors, and limited training sample variability. To address these issues, we introduce a novel approach, \textbf{\ourmodel{}}, which provides a scalable solution for generating diverse and precise datasets, markedly reducing preparation time and costs. We first introduce a general mask editing method that combines rigid and non-rigid editing techniques to generate high-quality synthetic masks. Specially, rigid editing leverages geometric priors from diffusion models to achieve precise viewpoint transformations under zero-shot conditions, while non-rigid editing employs adversarial training and self-attention mechanisms for complex, topologically consistent modifications. Then, we generate pairs of high-resolution image and accurate segmentation mask using a multi-conditional control generation method. Finally, our experiments on the widely-used DIS5K dataset benchmark demonstrate superior performance in quality and efficiency compared to existing methods. The code is available at \url{https://qian-hao-tian.github.io/MaskFactory/}.