Large language models (LLMs) have shown remarkable performance on many tasks in different domains. However, their performance in closed-book biomedical machine reading comprehension (MRC) has not been evaluated in depth. In this work, we evaluate GPT on four closed-book biomedical MRC benchmarks. We experiment with different conventional prompting techniques as well as introduce our own novel prompting method. To solve some of the retrieval problems inherent to LLMs, we propose a prompting strategy named Implicit Retrieval Augmented Generation (RAG) that alleviates the need for using vector databases to retrieve important chunks in traditional RAG setups. Moreover, we report qualitative assessments on the natural language generation outputs from our approach. The results show that our new prompting technique is able to get the best performance in two out of four datasets and ranks second in rest of them. Experiments show that modern-day LLMs like GPT even in a zero-shot setting can outperform supervised models, leading to new state-of-the-art (SoTA) results on two of the benchmarks.
Extractive Question Answering (EQA) in Machine Reading Comprehension (MRC) often faces the challenge of dealing with semantically identical but format-variant inputs. Our work introduces a novel approach, called the ``Query Latent Semantic Calibrator (QLSC)'', designed as an auxiliary module for existing MRC models. We propose a unique scaling strategy to capture latent semantic center features of queries. These features are then seamlessly integrated into traditional query and passage embeddings using an attention mechanism. By deepening the comprehension of the semantic queries-passage relationship, our approach diminishes sensitivity to variations in text format and boosts the model's capability in pinpointing accurate answers. Experimental results on robust Question-Answer datasets confirm that our approach effectively handles format-variant but semantically identical queries, highlighting the effectiveness and adaptability of our proposed method.
Machine Reading Comprehension (MRC) poses a significant challenge in the field of Natural Language Processing (NLP). While mainstream MRC methods predominantly leverage extractive strategies using encoder-only models such as BERT, generative approaches face the issue of out-of-control generation -- a critical problem where answers generated are often incorrect, irrelevant, or unfaithful to the source text. To address these limitations in generative models for MRC, we introduce the Question-Attended Span Extraction (QASE) module. Integrated during the fine-tuning phase of pre-trained generative language models (PLMs), QASE significantly enhances their performance, allowing them to surpass the extractive capabilities of advanced Large Language Models (LLMs) such as GPT-4 in few-shot settings. Notably, these gains in performance do not come with an increase in computational demands. The efficacy of the QASE module has been rigorously tested across various datasets, consistently achieving or even surpassing state-of-the-art (SOTA) results, thereby bridging the gap between generative and extractive models in extractive MRC tasks.
Multi-choice Machine Reading Comprehension (MMRC) aims to select the correct answer from a set of options based on a given passage and question. The existing methods employ the pre-trained language model as the encoder, share and transfer knowledge through fine-tuning.These methods mainly focus on the design of exquisite mechanisms to effectively capture the relationships among the triplet of passage, question and answers. It is non-trivial but ignored to transfer knowledge from other MRC tasks such as SQuAD due to task specific of MMRC.In this paper, we reconstruct multi-choice to single-choice by training a binary classification to distinguish whether a certain answer is correct. Then select the option with the highest confidence score as the final answer. Our proposed method gets rid of the multi-choice framework and can leverage resources of other tasks. We construct our model based on the ALBERT-xxlarge model and evaluate it on the RACE and DREAM datasets. Experimental results show that our model performs better than multi-choice methods. In addition, by transferring knowledge from other kinds of MRC tasks, our model achieves state-of-the-art results in both single and ensemble settings.
The rapid evolution of Natural Language Processing (NLP) has favoured major languages such as English, leaving a significant gap for many others due to limited resources. This is especially evident in the context of data annotation, a task whose importance cannot be underestimated, but which is time-consuming and costly. Thus, any dataset for resource-poor languages is precious, in particular when it is task-specific. Here, we explore the feasibility of repurposing an existing multilingual dataset for a new NLP task: we repurpose a subset of the BELEBELE dataset (Bandarkar et al., 2023), which was designed for multiple-choice question answering (MCQA), to enable the more practical task of extractive QA (EQA) in the style of machine reading comprehension. We present annotation guidelines and a parallel EQA dataset for English and Modern Standard Arabic (MSA). We also present QA evaluation results for several monolingual and cross-lingual QA pairs including English, MSA, and five Arabic dialects. We aim to help others adapt our approach for the remaining 120 BELEBELE language variants, many of which are deemed under-resourced. We also provide a thorough analysis and share insights to deepen understanding of the challenges and opportunities in NLP task reformulation.
Document Question Answering (QA) presents a challenge in understanding visually-rich documents (VRD), particularly those dominated by lengthy textual content like research journal articles. Existing studies primarily focus on real-world documents with sparse text, while challenges persist in comprehending the hierarchical semantic relations among multiple pages to locate multimodal components. To address this gap, we propose PDF-MVQA, which is tailored for research journal articles, encompassing multiple pages and multimodal information retrieval. Unlike traditional machine reading comprehension (MRC) tasks, our approach aims to retrieve entire paragraphs containing answers or visually rich document entities like tables and figures. Our contributions include the introduction of a comprehensive PDF Document VQA dataset, allowing the examination of semantically hierarchical layout structures in text-dominant documents. We also present new VRD-QA frameworks designed to grasp textual contents and relations among document layouts simultaneously, extending page-level understanding to the entire multi-page document. Through this work, we aim to enhance the capabilities of existing vision-and-language models in handling challenges posed by text-dominant documents in VRD-QA.
Machine Reading Comprehension (MRC) holds a pivotal role in shaping Medical Question Answering Systems (QAS) and transforming the landscape of accessing and applying medical information. However, the inherent challenges in the medical field, such as complex terminology and question ambiguity, necessitate innovative solutions. One key solution involves integrating specialized medical datasets and creating dedicated datasets. This strategic approach enhances the accuracy of QAS, contributing to advancements in clinical decision-making and medical research. To address the intricacies of medical terminology, a specialized dataset was integrated, exemplified by a novel Span extraction dataset derived from emrQA but restructured into 163,695 questions and 4,136 manually obtained answers, this new dataset was called emrQA-msquad dataset. Additionally, for ambiguous questions, a dedicated medical dataset for the Span extraction task was introduced, reinforcing the system's robustness. The fine-tuning of models such as BERT, RoBERTa, and Tiny RoBERTa for medical contexts significantly improved response accuracy within the F1-score range of 0.75 to 1.00 from 10.1% to 37.4%, 18.7% to 44.7% and 16.0% to 46.8%, respectively. Finally, emrQA-msquad dataset is publicy available at https://huggingface.co/datasets/Eladio/emrqa-msquad.
Reading comprehension continues to be a crucial research focus in the NLP community. Recent advances in Machine Reading Comprehension (MRC) have mostly centered on literal comprehension, referring to the surface-level understanding of content. In this work, we focus on the next level - interpretive comprehension, with a particular emphasis on inferring the themes of a narrative text. We introduce the first dataset specifically designed for interpretive comprehension of educational narratives, providing corresponding well-edited theme texts. The dataset spans a variety of genres and cultural origins and includes human-annotated theme keywords with varying levels of granularity. We further formulate NLP tasks under different abstractions of interpretive comprehension toward the main idea of a story. After conducting extensive experiments with state-of-the-art methods, we found the task to be both challenging and significant for NLP research. The dataset and source code have been made publicly available to the research community at https://github.com/RiTUAL-UH/EduStory.
Machine reading comprehension is an essential natural language processing task, which takes into a pair of context and query and predicts the corresponding answer to query. In this project, we developed an end-to-end question answering model incorporating BERT and additional linguistic features. We conclude that the BERT base model will be improved by incorporating the features. The EM score and F1 score are improved 2.17 and 2.14 compared with BERT(base). Our best single model reaches EM score 76.55 and F1 score 79.97 in the hidden test set. Our error analysis also shows that the linguistic architecture can help model understand the context better in that it can locate answers that BERT only model predicted "No Answer" wrongly.
Question answering (QA) and Machine Reading Comprehension (MRC) tasks have significantly advanced in recent years due to the rapid development of deep learning techniques and, more recently, large language models. At the same time, many benchmark datasets have become available for QA and MRC tasks. However, most existing large-scale benchmark datasets have been created predominantly using synchronous document collections like Wikipedia or the Web. Archival document collections, such as historical newspapers, contain valuable information from the past that is still not widely used to train large language models. To further contribute to advancing QA and MRC tasks and to overcome the limitation of previous datasets, we introduce ChroniclingAmericaQA, a large-scale temporal QA dataset with 487K question-answer pairs created based on the historical newspaper collection Chronicling America. Our dataset is constructed from a subset of the Chronicling America newspaper collection spanning 120 years. One of the significant challenges for utilizing digitized historical newspaper collections is the low quality of OCR text. Therefore, to enable realistic testing of QA models, our dataset can be used in three different ways: answering questions from raw and noisy content, answering questions from cleaner, corrected version of the content, as well as answering questions from scanned images of newspaper pages. This and the fact that ChroniclingAmericaQA spans the longest time period among available QA datasets make it quite a unique and useful resource.
In this paper, we address the significant gap in Arabic natural language processing (NLP) resources by introducing ArabicaQA, the first large-scale dataset for machine reading comprehension and open-domain question answering in Arabic. This comprehensive dataset, consisting of 89,095 answerable and 3,701 unanswerable questions created by crowdworkers to look similar to answerable ones, along with additional labels of open-domain questions marks a crucial advancement in Arabic NLP resources. We also present AraDPR, the first dense passage retrieval model trained on the Arabic Wikipedia corpus, specifically designed to tackle the unique challenges of Arabic text retrieval. Furthermore, our study includes extensive benchmarking of large language models (LLMs) for Arabic question answering, critically evaluating their performance in the Arabic language context. In conclusion, ArabicaQA, AraDPR, and the benchmarking of LLMs in Arabic question answering offer significant advancements in the field of Arabic NLP. The dataset and code are publicly accessible for further research https://github.com/DataScienceUIBK/ArabicaQA.
In medical information extraction, medical Named Entity Recognition (NER) is indispensable, playing a crucial role in developing medical knowledge graphs, enhancing medical question-answering systems, and analyzing electronic medical records. The challenge in medical NER arises from the complex nested structures and sophisticated medical terminologies, distinguishing it from its counterparts in traditional domains. In response to these complexities, we propose a medical NER model based on Machine Reading Comprehension (MRC), which uses a task-adaptive pre-training strategy to improve the model's capability in the medical field. Meanwhile, our model introduces multiple word-pair embeddings and multi-granularity dilated convolution to enhance the model's representation ability and uses a combined predictor of Biaffine and MLP to improve the model's recognition performance. Experimental evaluations conducted on the CMeEE, a benchmark for Chinese nested medical NER, demonstrate that our proposed model outperforms the compared state-of-the-art (SOTA) models.
This technical report describes the development of WangchanLion, an instruction fine-tuned model focusing on Machine Reading Comprehension (MRC) in the Thai language. Our model is based on SEA-LION and a collection of instruction following datasets. To promote open research and reproducibility, we publicly release all training data, code, and the final model weights under the Apache-2 license. To assess the contextual understanding capability, we conducted extensive experimental studies using two Thai MRC datasets, XQuAD and Iapp_wiki_qa_squad. Experimental results demonstrate the model's ability to comprehend the context and produce an answer faithful to the reference one in 0-shot and 1-shot settings. In addition, our evaluation goes beyond the traditional MRC. We propose a new evaluation scheme assessing the answer's correctness, helpfulness, conciseness, and contextuality. Our code is available publicly at https://github.com/vistec-AI/WangchanLion.
To address the challenges of out-of-control generation in generative models for machine reading comprehension (MRC), we introduce the Question-Attended Span Extraction (QASE) module. Integrated during the fine-tuning of pre-trained generative language models (PLMs), QASE enables these PLMs to match SOTA extractive methods and outperform leading LLMs like GPT-4 in MRC tasks, without significant increases in computational costs.
This paper presents the development process of a Vietnamese spoken language corpus for machine reading comprehension (MRC) tasks and provides insights into the challenges and opportunities associated with using real-world data for machine reading comprehension tasks. The existing MRC corpora in Vietnamese mainly focus on formal written documents such as Wikipedia articles, online newspapers, or textbooks. In contrast, the VlogQA consists of 10,076 question-answer pairs based on 1,230 transcript documents sourced from YouTube -- an extensive source of user-uploaded content, covering the topics of food and travel. By capturing the spoken language of native Vietnamese speakers in natural settings, an obscure corner overlooked in Vietnamese research, the corpus provides a valuable resource for future research in reading comprehension tasks for the Vietnamese language. Regarding performance evaluation, our deep-learning models achieved the highest F1 score of 75.34% on the test set, indicating significant progress in machine reading comprehension for Vietnamese spoken language data. In terms of EM, the highest score we accomplished is 53.97%, which reflects the challenge in processing spoken-based content and highlights the need for further improvement.
Data imbalance presents a significant challenge in various machine learning (ML) tasks, particularly named entity recognition (NER) within natural language processing (NLP). NER exhibits a data imbalance with a long-tail distribution, featuring numerous minority classes (i.e., entity classes) and a single majority class (i.e., O-class). This imbalance leads to misclassifications of the entity classes as the O-class. To tackle this issue, we propose a simple and effective learning method named majority or minority (MoM) learning. MoM learning incorporates the loss computed only for samples whose ground truth is the majority class into the loss of the conventional ML model. Evaluation experiments on four NER datasets (Japanese and English) showed that MoM learning improves prediction performance of the minority classes without sacrificing the performance of the majority class and is more effective than widely known and state-of-the-art methods. We also evaluated MoM learning using frameworks as sequential labeling and machine reading comprehension, which are commonly used in NER. Furthermore, MoM learning has achieved consistent performance improvements regardless of language or framework.
In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even ChatGPT are trained on vast amounts of in-domain medical corpora. However, in-domain pre-training is expensive in terms of time and resources. In this paper, we propose a resource-efficient approach for injecting domain knowledge into a model without relying on such domain-specific pre-training. Knowledge graphs are powerful resources for accessing medical information. Building on existing work, we introduce a method using Multi-Layer Perceptrons (MLPs) for aligning and integrating embeddings extracted from medical knowledge graphs with the embedding spaces of pre-trained language models (LMs). The aligned embeddings are fused with open-domain LMs BERT and RoBERTa that are fine-tuned for two MRC tasks, span detection (COVID-QA) and multiple-choice questions (PubMedQA). We compare our method to prior techniques that rely on a vocabulary overlap for embedding alignment and show how our method circumvents this requirement to deliver better performance. On both datasets, our method allows BERT/RoBERTa to either perform on par (occasionally exceeding) with stronger domain-specific models or show improvements in general over prior techniques. With the proposed approach, we signal an alternative method to in-domain pre-training to achieve domain proficiency. Our code is available here.
Objective To solve major clinical natural language processing (NLP) tasks using a unified text-to-text learning architecture based on a generative large language model (LLM) via prompt tuning. Methods We formulated 7 key clinical NLP tasks as text-to-text learning and solved them using one unified generative clinical LLM, GatorTronGPT, developed using GPT-3 architecture and trained with up to 20 billion parameters. We adopted soft prompts (i.e., trainable vectors) with frozen LLM, where the LLM parameters were not updated (i.e., frozen) and only the vectors of soft prompts were updated, known as prompt tuning. We added additional soft prompts as a prefix to the input layer, which were optimized during the prompt tuning. We evaluated the proposed method using 7 clinical NLP tasks and compared them with previous task-specific solutions based on Transformer models. Results and Conclusion The proposed approach achieved state-of-the-art performance for 5 out of 7 major clinical NLP tasks using one unified generative LLM. Our approach outperformed previous task-specific transformer models by ~3% for concept extraction and 7% for relation extraction applied to social determinants of health, 3.4% for clinical concept normalization, 3.4~10% for clinical abbreviation disambiguation, and 5.5~9% for natural language inference. Our approach also outperformed a previously developed prompt-based machine reading comprehension (MRC) model, GatorTron-MRC, for clinical concept and relation extraction. The proposed approach can deliver the ``one model for all`` promise from training to deployment using a unified generative LLM.
Retrieval augmentation has become an effective solution to empower large language models (LLMs) with external and verified knowledge sources from the database, which overcomes the limitations and hallucinations of LLMs in handling up-to-date and domain-specific information. However, existing embedding models for text retrieval usually have three non-negligible limitations. First, the number and diversity of samples in a batch are too restricted to supervise the modeling of textual nuances at scale. Second, the high proportional noise are detrimental to the semantic correctness and consistency of embeddings. Third, the equal treatment to easy and difficult samples would cause sub-optimum convergence of embeddings with poorer generalization. In this paper, we propose the PEG, a progressively learned embeddings for robust text retrieval. Specifically, we increase the training in-batch negative samples to 80,000, and for each query, we extracted five hard negatives. Concurrently, we incorporated a progressive learning mechanism, enabling the model to dynamically modulate its attention to the samples throughout the entire training process. Additionally, PEG is trained on more than 100 million data, encompassing a wide range of domains (e.g., finance, medicine, and tourism) and covering various tasks (e.g., question-answering, machine reading comprehension, and similarity matching). Extensive experiments conducted on C-MTEB and DuReader demonstrate that PEG surpasses state-of-the-art embeddings in retrieving true positives, highlighting its significant potential for applications in LLMs. Our model is publicly available at https://huggingface.co/TownsWu/PEG.
In cross-lingual language understanding, machine translation is often utilized to enhance the transferability of models across languages, either by translating the training data from the source language to the target, or from the target to the source to aid inference. However, in cross-lingual machine reading comprehension (MRC), it is difficult to perform a deep level of assistance to enhance cross-lingual transfer because of the variation of answer span positions in different languages. In this paper, we propose X-STA, a new approach for cross-lingual MRC. Specifically, we leverage an attentive teacher to subtly transfer the answer spans of the source language to the answer output space of the target. A Gradient-Disentangled Knowledge Sharing technique is proposed as an improved cross-attention block. In addition, we force the model to learn semantic alignments from multiple granularities and calibrate the model outputs with teacher guidance to enhance cross-lingual transferability. Experiments on three multi-lingual MRC datasets show the effectiveness of our method, outperforming state-of-the-art approaches.