In medical image analysis, feature engineering plays an important role in the design and performance of machine learning models. Persistent homology (PH), from the field of topological data analysis (TDA), demonstrates robustness and stability to data perturbations and addresses the limitation from traditional feature extraction approaches where a small change in input results in a large change in feature representation. Using PH, we store persistent topological and geometrical features in the form of the persistence barcode whereby large bars represent global topological features and small bars encapsulate geometrical information of the data. When multiple barcodes are computed from 2D or 3D medical images, two approaches can be used to construct the final topological feature vector in each dimension: aggregating persistence barcodes followed by featurization or concatenating topological feature vectors derived from each barcode. In this study, we conduct a comprehensive analysis across diverse medical imaging datasets to compare the effects of the two aforementioned approaches on the performance of classification models. The results of this analysis indicate that feature concatenation preserves detailed topological information from individual barcodes, yields better classification performance and is therefore a preferred approach when conducting similar experiments.
Traumatic Brain Injury (TBI) is a major contributor to mortality among older adults, with geriatric patients facing disproportionately high risk due to age-related physiological vulnerability and comorbidities. Early and accurate prediction of mortality is essential for guiding clinical decision-making and optimizing ICU resource allocation. In this study, we utilized the MIMIC-III database to identify geriatric TBI patients and applied a machine learning framework to develop a 30-day mortality prediction model. A rigorous preprocessing pipeline-including Random Forest-based imputation, feature engineering, and hybrid selection-was implemented to refine predictors from 69 to 9 clinically meaningful variables. CatBoost emerged as the top-performing model, achieving an AUROC of 0.867 (95% CI: 0.809-0.922), surpassing traditional scoring systems. SHAP analysis confirmed the importance of GCS score, oxygen saturation, and prothrombin time as dominant predictors. These findings highlight the value of interpretable machine learning tools for early mortality risk stratification in elderly TBI patients and provide a foundation for future clinical integration to support high-stakes decision-making in critical care.
In this study, we propose a machine learning-based method for noise reduction and disease-causing gene feature extraction in gene sequencing DeepSeqDenoise algorithm combines CNN and RNN to effectively remove the sequencing noise, and improves the signal-to-noise ratio by 9.4 dB. We screened 17 key features by feature engineering, and constructed an integrated learning model to predict disease-causing genes with 94.3% accuracy. We successfully identified 57 new candidate disease-causing genes in a cardiovascular disease cohort validation, and detected 3 missed variants in clinical applications. The method significantly outperforms existing tools and provides strong support for accurate diagnosis of genetic diseases.
The ubiquity of social media platforms facilitates malicious linguistic steganography, posing significant security risks. Steganalysis is profoundly hindered by the challenge of identifying subtle cognitive inconsistencies arising from textual fragmentation and complex dialogue structures, and the difficulty in achieving robust aggregation of multi-dimensional weak signals, especially given extreme steganographic sparsity and sophisticated steganography. These core detection difficulties are compounded by significant data imbalance. This paper introduces GSDFuse, a novel method designed to systematically overcome these obstacles. GSDFuse employs a holistic approach, synergistically integrating hierarchical multi-modal feature engineering to capture diverse signals, strategic data augmentation to address sparsity, adaptive evidence fusion to intelligently aggregate weak signals, and discriminative embedding learning to enhance sensitivity to subtle inconsistencies. Experiments on social media datasets demonstrate GSDFuse's state-of-the-art (SOTA) performance in identifying sophisticated steganography within complex dialogue environments. The source code for GSDFuse is available at https://github.com/NebulaEmmaZh/GSDFuse.
We introduce the Dual-Flow Generative Ranking Network (DFGR), a two-stream architecture designed for recommendation systems. DFGR integrates innovative interaction patterns between real and fake flows within the QKV modules of the self-attention mechanism, enhancing both training and inference efficiency. This approach effectively addresses a key limitation observed in Meta's proposed HSTU generative recommendation approach, where heterogeneous information volumes are mapped into identical vector spaces, leading to training instability. Unlike traditional recommendation models, DFGR only relies on user history behavior sequences and minimal attribute information, eliminating the need for extensive manual feature engineering. Comprehensive evaluations on open-source and industrial datasets reveal DFGR's superior performance compared to established baselines such as DIN, DCN, DIEN, and DeepFM. We also investigate optimal parameter allocation strategies under computational constraints, establishing DFGR as an efficient and effective next-generation generate ranking paradigm.
This paper presents a concise review of Contextual Multi-Armed Bandit (CMAB) methods and introduces an experimental framework for scalable, interpretable offer selection, addressing the challenge of fast-changing offers. The approach models context at the product category level, allowing offers to span multiple categories and enabling knowledge transfer across similar offers. This improves learning efficiency and generalization in dynamic environments. The framework extends standard CMAB methodology to support multi-category contexts, and achieves scalability through efficient feature engineering and modular design. Advanced features such as MPG (Member Purchase Gap) and MF (Matrix Factorization) capture nuanced user-offer interactions, with implementation in Python for practical deployment. A key contribution is interpretability at scale: logistic regression models yield transparent weight vectors, accessible via a large language model (LLM) interface for real-time, user-level tracking and explanation of evolving preferences. This enables the generation of detailed member profiles and identification of behavioral patterns, supporting personalized offer optimization and enhancing trust in automated decisions. By situating our prototype alongside established paradigms like Generalized Linear Models and Thompson Sampling, we demonstrate its value for both research and real-world CMAB applications.
Bone fractures are a leading cause of morbidity and disability worldwide, imposing significant clinical and economic burdens on healthcare systems. Traditional X ray interpretation is time consuming and error prone, while existing machine learning and deep learning solutions often demand extensive feature engineering, large, annotated datasets, and high computational resources. To address these challenges, a distributed hybrid quantum classical pipeline is proposed that first applies Principal Component Analysis (PCA) for dimensionality reduction and then leverages a 4 qubit quantum amplitude encoding circuit for feature enrichment. By fusing eight PCA derived features with eight quantum enhanced features into a 16 dimensional vector and then classifying with different machine learning models achieving 99% accuracy using a public multi region X ray dataset on par with state of the art transfer learning models while reducing feature extraction time by 82%.
The automatic analysis of document layouts in digital-born PDF documents remains a challenging problem due to the heterogeneous arrangement of textual and nontextual elements and the imprecision of the textual metadata in the Portable Document Format. In this work, we benchmark Graph Neural Network (GNN) architectures for the task of fine-grained layout classification of text blocks from digital native documents. We introduce two graph construction structures: a k-closest-neighbor graph and a fully connected graph, and generate node features via pre-trained text and vision models, thus avoiding manual feature engineering. Three experimental frameworks are evaluated: single-modality (text or visual), concatenated multimodal, and dual-branch multimodal. We evaluated four foundational GNN models and compared them with the baseline. Our experiments are specifically conducted on a rich dataset of public affairs documents that includes more than 20 sources (e.g., regional and national-level official gazettes), 37K PDF documents, with 441K pages in total. Our results demonstrate that GraphSAGE operating on the k-closest-neighbor graph in a dual-branch configuration achieves the highest per-class and overall accuracy, outperforming the baseline in some sources. These findings confirm the importance of local layout relationships and multimodal fusion exploited through GNNs for the analysis of native digital document layouts.
As a widely-used and practical tool, feature engineering transforms raw data into discriminative features to advance AI model performance. However, existing methods usually apply feature selection and generation separately, failing to strive a balance between reducing redundancy and adding meaningful dimensions. To fill this gap, we propose an agentic feature augmentation concept, where the unification of feature generation and selection is modeled as agentic teaming and planning. Specifically, we develop a Multi-Agent System with Long and Short-Term Memory (MAGS), comprising a selector agent to eliminate redundant features, a generator agent to produce informative new dimensions, and a router agent that strategically coordinates their actions. We leverage in-context learning with short-term memory for immediate feedback refinement and long-term memory for globally optimal guidance. Additionally, we employ offline Proximal Policy Optimization (PPO) reinforcement fine-tuning to train the router agent for effective decision-making to navigate a vast discrete feature space. Extensive experiments demonstrate that this unified agentic framework consistently achieves superior task performance by intelligently orchestrating feature selection and generation.
Data engineering pipelines are essential - albeit costly - components of predictive analytics frameworks requiring significant engineering time and domain expertise for carrying out tasks such as data ingestion, preprocessing, feature extraction, and feature engineering. In this paper, we propose ADEPT, an automated data engineering pipeline via text embeddings. At the core of the ADEPT framework is a simple yet powerful idea that the entropy of embeddings corresponding to textually dense raw format representation of time series can be intuitively viewed as equivalent (or in many cases superior) to that of numerically dense vector representations obtained by data engineering pipelines. Consequently, ADEPT uses a two step approach that (i) leverages text embeddings to represent the diverse data sources, and (ii) constructs a variational information bottleneck criteria to mitigate entropy variance in text embeddings of time series data. ADEPT provides an end-to-end automated implementation of predictive models that offers superior predictive performance despite issues such as missing data, ill-formed records, improper or corrupted data formats and irregular timestamps. Through exhaustive experiments, we show that the ADEPT outperforms the best existing benchmarks in a diverse set of datasets from large-scale applications across healthcare, finance, science and industrial internet of things. Our results show that ADEPT can potentially leapfrog many conventional data pipeline steps thereby paving the way for efficient and scalable automation pathways for diverse data science applications.
We present LiGR, a large-scale ranking framework developed at LinkedIn that brings state-of-the-art transformer-based modeling architectures into production. We introduce a modified transformer architecture that incorporates learned normalization and simultaneous set-wise attention to user history and ranked items. This architecture enables several breakthrough achievements, including: (1) the deprecation of most manually designed feature engineering, outperforming the prior state-of-the-art system using only few features (compared to hundreds in the baseline), (2) validation of the scaling law for ranking systems, showing improved performance with larger models, more training data, and longer context sequences, and (3) simultaneous joint scoring of items in a set-wise manner, leading to automated improvements in diversity. To enable efficient serving of large ranking models, we describe techniques to scale inference effectively using single-pass processing of user history and set-wise attention. We also summarize key insights from various ablation studies and A/B tests, highlighting the most impactful technical approaches.
This study develops deep learning models to forecast the number of patients in the emergency department (ED) boarding phase six hours in advance, aiming to support proactive operational decision-making using only non-clinical, operational, and contextual features. Data were collected from five sources: ED tracking systems, inpatient census records, weather reports, federal holiday calendars, and local event schedules. After feature engineering, the data were aggregated at an hourly level, cleaned, and merged into a unified dataset for model training. Several time series deep learning models, including ResNetPlus, TSTPlus, TSiTPlus (from the tsai library), and N-BEATSx, were trained using Optuna and grid search for hyperparameter tuning. The average ED boarding count was 28.7, with a standard deviation of 11.2. N-BEATSx achieved the best performance, with a mean absolute error of 2.10, mean squared error of 7.08, root mean squared error of 2.66, and a coefficient of determination of 0.95. The model maintained stable accuracy even during periods of extremely high boarding counts, defined as values exceeding one, two, or three standard deviations above the mean. Results show that accurate six-hour-ahead forecasts are achievable without using patient-level clinical data. While strong performance was observed even with a basic feature set, the inclusion of additional features improved prediction stability under extreme conditions. This framework offers a practical and generalizable approach for hospital systems to anticipate boarding levels and help mitigate ED overcrowding.
Traditional time series models are task-specific and often depend on dataset-specific training and extensive feature engineering. While Transformer-based architectures have improved scalability, foundation models, commonplace in text, vision, and audio, remain under-explored for time series and are largely restricted to forecasting. We introduce $\textbf{CHARM}$, a foundation embedding model for multivariate time series that learns shared, transferable, and domain-aware representations. To address the unique difficulties of time series foundation learning, $\textbf{CHARM}$ incorporates architectural innovations that integrate channel-level textual descriptions while remaining invariant to channel order. The model is trained using a Joint Embedding Predictive Architecture (JEPA), with novel augmentation schemes and a loss function designed to improve interpretability and training stability. Our $7$M-parameter model achieves state-of-the-art performance across diverse downstream tasks, setting a new benchmark for time series representation learning.
Abstractive summarization of scientific papers has always been a research focus, yet existing methods face two main challenges. First, most summarization models rely on Encoder-Decoder architectures that treat papers as sequences of words, thus fail to fully capture the structured information inherent in scientific papers. Second, existing research often use keyword mapping or feature engineering to identify the structural information, but these methods struggle with the structural flexibility of scientific papers and lack robustness across different disciplines. To address these challenges, we propose a two-stage abstractive summarization framework that leverages automatic recognition of structural functions within scientific papers. In the first stage, we standardize chapter titles from numerous scientific papers and construct a large-scale dataset for structural function recognition. A classifier is then trained to automatically identify the key structural components (e.g., Background, Methods, Results, Discussion), which provides a foundation for generating more balanced summaries. In the second stage, we employ Longformer to capture rich contextual relationships across sections and generating context-aware summaries. Experiments conducted on two domain-specific scientific paper summarization datasets demonstrate that our method outperforms advanced baselines, and generates more comprehensive summaries. The code and dataset can be accessed at https://github.com/tongbao96/code-for-SFR-AS.
Traffic forecasting is a key task in the field of Intelligent Transportation Systems. Recent research on traffic forecasting has mainly focused on combining graph neural networks (GNNs) with other models. However, GNNs only consider short-range spatial information. In this study, we present a novel model termed LSTAN-GERPE (Lightweight Spatio-Temporal Attention Network with Graph Embedding and Rotational Position Encoding). This model leverages both Temporal and Spatial Attention mechanisms to effectively capture long-range traffic dynamics. Additionally, the optimal frequency for rotational position encoding is determined through a grid search approach in both the spatial and temporal attention mechanisms. This systematic optimization enables the model to effectively capture complex traffic patterns. The model also enhances feature representation by incorporating geographical location maps into the spatio-temporal embeddings. Without extensive feature engineering, the proposed method in this paper achieves advanced accuracy on the real-world traffic forecasting datasets PeMS04 and PeMS08.
Accurate electricity load forecasting is essential for grid stability, resource optimization, and renewable energy integration. While transformer-based deep learning models like TimeGPT have gained traction in time-series forecasting, their effectiveness in long-term electricity load prediction remains uncertain. This study evaluates forecasting models ranging from classical regression techniques to advanced deep learning architectures using data from the ESD 2025 competition. The dataset includes two years of historical electricity load data, alongside temperature and global horizontal irradiance (GHI) across five sites, with a one-day-ahead forecasting horizon. Since actual test set load values remain undisclosed, leveraging predicted values would accumulate errors, making this a long-term forecasting challenge. We employ (i) Principal Component Analysis (PCA) for dimensionality reduction and (ii) frame the task as a regression problem, using temperature and GHI as covariates to predict load for each hour, (iii) ultimately stacking 24 models to generate yearly forecasts. Our results reveal that deep learning models, including TimeGPT, fail to consistently outperform simpler statistical and machine learning approaches due to the limited availability of training data and exogenous variables. In contrast, XGBoost, with minimal feature engineering, delivers the lowest error rates across all test cases while maintaining computational efficiency. This highlights the limitations of deep learning in long-term electricity forecasting and reinforces the importance of model selection based on dataset characteristics rather than complexity. Our study provides insights into practical forecasting applications and contributes to the ongoing discussion on the trade-offs between traditional and modern forecasting methods.
The characterization of exoplanetary atmospheres through spectral analysis is a complex challenge. The NeurIPS 2024 Ariel Data Challenge, in collaboration with the European Space Agency's (ESA) Ariel mission, provided an opportunity to explore machine learning techniques for extracting atmospheric compositions from simulated spectral data. In this work, we focus on a data-centric business approach, prioritizing generalization over competition-specific optimization. We briefly outline multiple experimental axes, including feature extraction, signal transformation, and heteroskedastic uncertainty modeling. Our experiments demonstrate that uncertainty estimation plays a crucial role in the Gaussian Log-Likelihood (GLL) score, impacting performance by several percentage points. Despite improving the GLL score by 11%, our results highlight the inherent limitations of tabular modeling and feature engineering for this task, as well as the constraints of a business-driven approach within a Kaggle-style competition framework. Our findings emphasize the trade-offs between model simplicity, interpretability, and generalization in astrophysical data analysis.
Vehicular Ad Hoc Networks (VANETs) play a key role in Intelligent Transportation Systems (ITS), particularly in enabling real-time communication for emergency vehicles. However, Distributed Denial of Service (DDoS) attacks, which interfere with safety-critical communication channels, can severely impair their reliability. This study introduces a robust and scalable framework to detect DDoS attacks in highway-based VANET environments. A synthetic dataset was constructed using Network Simulator 3 (NS-3) in conjunction with the Simulation of Urban Mobility (SUMO) and further enriched with real-world mobility traces from Germany's A81 highway, extracted via OpenStreetMap (OSM). Three traffic categories were simulated: DDoS, VoIP, and TCP-based video streaming (VideoTCP). The data preprocessing pipeline included normalization, signal-to-noise ratio (SNR) feature engineering, missing value imputation, and class balancing using the Synthetic Minority Over-sampling Technique (SMOTE). Feature importance was assessed using SHapley Additive exPlanations (SHAP). Eleven classifiers were benchmarked, among them XGBoost (XGB), CatBoost (CB), AdaBoost (AB), GradientBoosting (GB), and an Artificial Neural Network (ANN). XGB and CB achieved the best performance, each attaining an F1-score of 96%. These results highlight the robustness of the proposed framework and its potential for real-time deployment in VANETs to secure critical emergency communications.
Accurate prediction of Quality of Service (QoS) metrics is fundamental for selecting and managing cloud based services. Traditional QoS models rely on manual feature engineering and yield only point estimates, offering no insight into the confidence of their predictions. In this paper, we propose QoSBERT, the first framework that reformulates QoS prediction as a semantic regression task based on pre trained language models. Unlike previous approaches relying on sparse numerical features, QoSBERT automatically encodes user service metadata into natural language descriptions, enabling deep semantic understanding. Furthermore, we integrate a Monte Carlo Dropout based uncertainty estimation module, allowing for trustworthy and risk-aware service quality prediction, which is crucial yet underexplored in existing QoS models. QoSBERT applies attentive pooling over contextualized embeddings and a lightweight multilayer perceptron regressor, fine tuned jointly to minimize absolute error. We further exploit the resulting uncertainty estimates to select high quality training samples, improving robustness in low resource settings. On standard QoS benchmark datasets, QoSBERT achieves an average reduction of 11.7% in MAE and 6.7% in RMSE for response time prediction, and 6.9% in MAE for throughput prediction compared to the strongest baselines, while providing well calibrated confidence intervals for robust and trustworthy service quality estimation. Our approach not only advances the accuracy of service quality prediction but also delivers reliable uncertainty quantification, paving the way for more trustworthy, data driven service selection and optimization.
Few-shot tabular learning, in which machine learning models are trained with a limited amount of labeled data, provides a cost-effective approach to addressing real-world challenges. The advent of Large Language Models (LLMs) has sparked interest in leveraging their pre-trained knowledge for few-shot tabular learning. Despite promising results, existing approaches either rely on test-time knowledge extraction, which introduces undesirable latency, or text-level knowledge, which leads to unreliable feature engineering. To overcome these limitations, we propose Latte, a training-time knowledge extraction framework that transfers the latent prior knowledge within LLMs to optimize a more generalized downstream model. Latte enables general knowledge-guided downstream tabular learning, facilitating the weighted fusion of information across different feature values while reducing the risk of overfitting to limited labeled data. Furthermore, Latte is compatible with existing unsupervised pre-training paradigms and effectively utilizes available unlabeled samples to overcome the performance limitations imposed by an extremely small labeled dataset. Extensive experiments on various few-shot tabular learning benchmarks demonstrate the superior performance of Latte, establishing it as a state-of-the-art approach in this domain