Entity relation extraction consists of two sub-tasks: entity recognition and relation extraction. Existing methods either tackle these two tasks separately or unify them with word-by-word interactions. In this paper, we propose HIORE, a new method for unified entity relation extraction. The key insight is to leverage the high-order interactions, i.e., the complex association among word pairs, which contains richer information than the first-order word-by-word interactions. For this purpose, we first devise a W-shape DNN (WNet) to capture coarse-level high-order connections. Then, we build a heuristic high-order graph and further calibrate the representations with a graph neural network (GNN). Experiments on three benchmarks (ACE04, ACE05, SciERC) show that HIORE achieves the state-of-the-art performance on relation extraction and an improvement of 1.1~1.8 F1 points over the prior best unified model.
Process-aware information systems offer extensive advantages to companies, facilitating planning, operations, and optimization of day-to-day business activities. However, the time-consuming but required step of designing formal business process models often hampers the potential of these systems. To overcome this challenge, automated generation of business process models from natural language text has emerged as a promising approach to expedite this step. Generally two crucial subtasks have to be solved: extracting process-relevant information from natural language and creating the actual model. Approaches towards the first subtask are rule based methods, highly optimized for specific domains, but hard to adapt to related applications. To solve this issue, we present an extension to an existing pipeline, to make it entirely data driven. We demonstrate the competitiveness of our improved pipeline, which not only eliminates the substantial overhead associated with feature engineering and rule definition, but also enables adaptation to different datasets, entity and relation types, and new domains. Additionally, the largest available dataset (PET) for the first subtask, contains no information about linguistic references between mentions of entities in the process description. Yet, the resolution of these mentions into a single visual element is essential for high quality process models. We propose an extension to the PET dataset that incorporates information about linguistic references and a corresponding method for resolving them. Finally, we provide a detailed analysis of the inherent challenges in the dataset at hand.
Jointly extracting entity pairs and their relations is challenging when working on distantly-supervised data with ambiguous or noisy labels. To mitigate such impact, we propose uncertainty-aware bootstrap learning, which is motivated by the intuition that the higher uncertainty of an instance, the more likely the model confidence is inconsistent with the ground truths. Specifically, we first explore instance-level data uncertainty to create an initial high-confident examples. Such subset serves as filtering noisy instances and facilitating the model to converge fast at the early stage. During bootstrap learning, we propose self-ensembling as a regularizer to alleviate inter-model uncertainty produced by noisy labels. We further define probability variance of joint tagging probabilities to estimate inner-model parametric uncertainty, which is used to select and build up new reliable training instances for the next iteration. Experimental results on two large datasets reveal that our approach outperforms existing strong baselines and related methods.
Relation extraction (RE) aims to extract potential relations according to the context of two entities, thus, deriving rational contexts from sentences plays an important role. Previous works either focus on how to leverage the entity information (e.g., entity types, entity verbalization) to inference relations, but ignore context-focused content, or use counterfactual thinking to remove the model's bias of potential relations in entities, but the relation reasoning process will still be hindered by irrelevant content. Therefore, how to preserve relevant content and remove noisy segments from sentences is a crucial task. In addition, retained content needs to be fluent enough to maintain semantic coherence and interpretability. In this work, we propose a novel rationale extraction framework named RE2, which leverages two continuity and sparsity factors to obtain relevant and coherent rationales from sentences. To solve the problem that the gold rationales are not labeled, RE2 applies an optimizable binary mask to each token in the sentence, and adjust the rationales that need to be selected according to the relation label. Experiments on four datasets show that RE2 surpasses baselines.
In spite of the potential for ground-breaking achievements offered by large language models (LLMs) (e.g., GPT-3), they still lag significantly behind fully-supervised baselines (e.g., fine-tuned BERT) in relation extraction (RE). This is due to the two major shortcomings of LLMs in RE: (1) low relevance regarding entity and relation in retrieved demonstrations for in-context learning; and (2) the strong inclination to wrongly classify NULL examples into other pre-defined labels. In this paper, we propose GPT-RE to bridge the gap between LLMs and fully-supervised baselines. GPT-RE successfully addresses the aforementioned issues by (1) incorporating task-specific entity representations in demonstration retrieval; and (2) enriching the demonstrations with gold label-induced reasoning logic. We evaluate GPT-RE on four widely-used RE datasets, and observe that GPT-RE achieves improvements over not only existing GPT-3 baselines, but also fully-supervised baselines. Specifically, GPT-RE achieves SOTA performances on the Semeval and SciERC datasets, and competitive performances on the TACRED and ACE05 datasets.
Recent research demonstrates that external knowledge injection can advance pre-trained language models (PLMs) in a variety of downstream NLP tasks. However, existing knowledge injection methods are either applicable to structured knowledge or unstructured knowledge, lacking a unified usage. In this paper, we propose a UNified knowledge inTERface, UNTER, to provide a unified perspective to exploit both structured knowledge and unstructured knowledge. In UNTER, we adopt the decoder as a unified knowledge interface, aligning span representations obtained from the encoder with their corresponding knowledge. This approach enables the encoder to uniformly invoke span-related knowledge from its parameters for downstream applications. Experimental results show that, with both forms of knowledge injected, UNTER gains continuous improvements on a series of knowledge-driven NLP tasks, including entity typing, named entity recognition and relation extraction, especially in low-resource scenarios.
Scaling language models have revolutionized widespread NLP tasks, yet little comprehensively explored few-shot relation extraction with large language models. In this paper, we investigate principal methodologies, in-context learning and data generation, for few-shot relation extraction via GPT-3.5 through exhaustive experiments. To enhance few-shot performance, we further propose task-related instructions and schema-constrained data generation. We observe that in-context learning can achieve performance on par with previous prompt learning approaches, and data generation with the large language model can boost previous solutions to obtain new state-of-the-art few-shot results on four widely-studied relation extraction datasets. We hope our work can inspire future research for the capabilities of large language models in few-shot relation extraction. Code is available in https://github.com/zjunlp/DeepKE/tree/main/example/llm.
Knowledge distillation conducts an effective model compression method while holding some limitations:(1) the feature based distillation methods only focus on distilling the feature map but are lack of transferring the relation of data examples; (2) the relational distillation methods are either limited to the handcrafted functions for relation extraction, such as L2 norm, or weak in inter- and intra- class relation modeling. Besides, the feature divergence of heterogeneous teacher-student architectures may lead to inaccurate relational knowledge transferring. In this work, we propose a novel training framework named Class-Oriented Relational Self Distillation (CORSD) to address the limitations. The trainable relation networks are designed to extract relation of structured data input, and they enable the whole model to better classify samples by transferring the relational knowledge from the deepest layer of the model to shallow layers. Besides, auxiliary classifiers are proposed to make relation networks capture class-oriented relation that benefits classification task. Experiments demonstrate that CORSD achieves remarkable improvements. Compared to baseline, 3.8%, 1.5% and 4.5% averaged accuracy boost can be observed on CIFAR100, ImageNet and CUB-200-2011, respectively.
Compared with standard text, understanding dialogue is more challenging for machines as the dynamic and unexpected semantic changes in each turn. To model such inconsistent semantics, we propose a simple but effective Hierarchical Dialogue Understanding model, HiDialog. Specifically, we first insert multiple special tokens into a dialogue and propose the turn-level attention to learn turn embeddings hierarchically. Then, a heterogeneous graph module is leveraged to polish the learned embeddings. We evaluate our model on various dialogue understanding tasks including dialogue relation extraction, dialogue emotion recognition, and dialogue act classification. Results show that our simple approach achieves state-of-the-art performance on all three tasks above. All our source code is publicly available at https://github.com/ShawX825/HiDialog.
Knowledge graphs have shown promise for several cybersecurity tasks, such as vulnerability assessment and threat analysis. In this work, we present a new method for constructing a vulnerability knowledge graph from information in the National Vulnerability Database (NVD). Our approach combines named entity recognition (NER), relation extraction (RE), and entity prediction using a combination of neural models, heuristic rules, and knowledge graph embeddings. We demonstrate how our method helps to fix missing entities in knowledge graphs used for cybersecurity and evaluate the performance.
Universal Information Extraction (UIE) is an area of interest due to the challenges posed by varying targets, heterogeneous structures, and demand-specific schemas. However, previous works have only achieved limited success by unifying a few tasks, such as Named Entity Recognition (NER) and Relation Extraction (RE), which fall short of being authentic UIE models particularly when extracting other general schemas such as quadruples and quintuples. Additionally, these models used an implicit structural schema instructor, which could lead to incorrect links between types, hindering the model's generalization and performance in low-resource scenarios. In this paper, we redefine the authentic UIE with a formal formulation that encompasses almost all extraction schemas. To the best of our knowledge, we are the first to introduce UIE for any kind of schemas. In addition, we propose RexUIE, which is a Recursive Method with Explicit Schema Instructor for UIE. To avoid interference between different types, we reset the position ids and attention mask matrices. RexUIE shows strong performance under both full-shot and few-shot settings and achieves State-of-the-Art results on the tasks of extracting complex schemas.
Although gold nanorods have been the subject of much research, the pathways for controlling their shape and thereby their optical properties remain largely heuristically understood. Although it is apparent that the simultaneous presence of and interaction between various reagents during synthesis control these properties, computational and experimental approaches for exploring the synthesis space can be either intractable or too time-consuming in practice. This motivates an alternative approach leveraging the wealth of synthesis information already embedded in the body of scientific literature by developing tools to extract relevant structured data in an automated, high-throughput manner. To that end, we present an approach using the powerful GPT-3 language model to extract structured multi-step seed-mediated growth procedures and outcomes for gold nanorods from unstructured scientific text. GPT-3 prompt completions are fine-tuned to predict synthesis templates in the form of JSON documents from unstructured text input with an overall accuracy of $86\%$. The performance is notable, considering the model is performing simultaneous entity recognition and relation extraction. We present a dataset of 11,644 entities extracted from 1,137 papers, resulting in 268 papers with at least one complete seed-mediated gold nanorod growth procedure and outcome for a total of 332 complete procedures.
Visual information extraction (VIE) plays an important role in Document Intelligence. Generally, it is divided into two tasks: semantic entity recognition (SER) and relation extraction (RE). Recently, pre-trained models for documents have achieved substantial progress in VIE, particularly in SER. However, most of the existing models learn the geometric representation in an implicit way, which has been found insufficient for the RE task since geometric information is especially crucial for RE. Moreover, we reveal another factor that limits the performance of RE lies in the objective gap between the pre-training phase and the fine-tuning phase for RE. To tackle these issues, we propose in this paper a multi-modal framework, named GeoLayoutLM, for VIE. GeoLayoutLM explicitly models the geometric relations in pre-training, which we call geometric pre-training. Geometric pre-training is achieved by three specially designed geometry-related pre-training tasks. Additionally, novel relation heads, which are pre-trained by the geometric pre-training tasks and fine-tuned for RE, are elaborately designed to enrich and enhance the feature representation. According to extensive experiments on standard VIE benchmarks, GeoLayoutLM achieves highly competitive scores in the SER task and significantly outperforms the previous state-of-the-arts for RE (\eg, the F1 score of RE on FUNSD is boosted from 80.35\% to 89.45\%). The code and models are publicly available at https://github.com/AlibabaResearch/AdvancedLiterateMachinery/tree/main/DocumentUnderstanding/GeoLayoutLM
Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is particularly true in the biomedical field, where scientists and physicians are constantly striving to find new methods of diagnosis, treatment and eventually cure. Knowledge Graphs (KGs) offer a real way of organizing and retrieving the massive and growing amount of biomedical knowledge. Objective : We propose an end-to-end approach for knowledge extraction and analysis from biomedical clinical notes using the Bidirectional Encoder Representations from Transformers (BERT) model and Conditional Random Field (CRF) layer. Methods : The approach is based on knowledge graphs, which can effectively process abstract biomedical concepts such as relationships and interactions between medical entities. Besides offering an intuitive way to visualize these concepts, KGs can solve more complex knowledge retrieval problems by simplifying them into simpler representations or by transforming the problems into representations from different perspectives. We created a biomedical Knowledge Graph using using Natural Language Processing models for named entity recognition and relation extraction. The generated biomedical knowledge graphs (KGs) are then used for question answering. Results : The proposed framework can successfully extract relevant structured information with high accuracy (90.7% for Named-entity recognition (NER), 88% for relation extraction (RE)), according to experimental findings based on real-world 505 patient biomedical unstructured clinical notes. Conclusions : In this paper, we propose a novel end-to-end system for the construction of a biomedical knowledge graph from clinical textual using a variation of BERT models.
Relation Extraction (RE) is a crucial task in Information Extraction, which entails predicting relationships between entities within a given sentence. However, extending pre-trained RE models to other languages is challenging, particularly in real-world scenarios where Cross-Lingual Relation Extraction (XRE) is required. Despite recent advancements in Prompt-Learning, which involves transferring knowledge from Multilingual Pre-trained Language Models (PLMs) to diverse downstream tasks, there is limited research on the effective use of multilingual PLMs with prompts to improve XRE. In this paper, we present a novel XRE algorithm based on Prompt-Tuning, referred to as Prompt-XRE. To evaluate its effectiveness, we design and implement several prompt templates, including hard, soft, and hybrid prompts, and empirically test their performance on competitive multilingual PLMs, specifically mBART. Our extensive experiments, conducted on the low-resource ACE05 benchmark across multiple languages, demonstrate that our Prompt-XRE algorithm significantly outperforms both vanilla multilingual PLMs and other existing models, achieving state-of-the-art performance in XRE. To further show the generalization of our Prompt-XRE on larger data scales, we construct and release a new XRE dataset- WMT17-EnZh XRE, containing 0.9M English-Chinese pairs extracted from WMT 2017 parallel corpus. Experiments on WMT17-EnZh XRE also show the effectiveness of our Prompt-XRE against other competitive baselines. The code and newly constructed dataset are freely available at \url{https://github.com/HSU-CHIA-MING/Prompt-XRE}.
Lifelogging has gained more attention due to its wide applications, such as personalized recommendations or memory assistance. The issues of collecting and extracting personal life events have emerged. People often share their life experiences with others through conversations. However, extracting life events from conversations is rarely explored. In this paper, we present Life Event Dialog, a dataset containing fine-grained life event annotations on conversational data. In addition, we initiate a novel conversational life event extraction task and differentiate the task from the public event extraction or the life event extraction from other sources like microblogs. We explore three information extraction (IE) frameworks to address the conversational life event extraction task: OpenIE, relation extraction, and event extraction. A comprehensive empirical analysis of the three baselines is established. The results suggest that the current event extraction model still struggles with extracting life events from human daily conversations. Our proposed life event dialog dataset and in-depth analysis of IE frameworks will facilitate future research on life event extraction from conversations.
Objective: Identifying study-eligible patients within clinical databases is a critical step in clinical research. However, accurate query design typically requires extensive technical and biomedical expertise. We sought to create a system capable of generating data model-agnostic queries while also providing novel logical reasoning capabilities for complex clinical trial eligibility criteria. Materials and Methods: The task of query creation from eligibility criteria requires solving several text-processing problems, including named entity recognition and relation extraction, sequence-to-sequence transformation, normalization, and reasoning. We incorporated hybrid deep learning and rule-based modules for these, as well as a knowledge base of the Unified Medical Language System (UMLS) and linked ontologies. To enable data-model agnostic query creation, we introduce a novel method for tagging database schema elements using UMLS concepts. To evaluate our system, called LeafAI, we compared the capability of LeafAI to a human database programmer to identify patients who had been enrolled in 8 clinical trials conducted at our institution. We measured performance by the number of actual enrolled patients matched by generated queries. Results: LeafAI matched a mean 43% of enrolled patients with 27,225 eligible across 8 clinical trials, compared to 27% matched and 14,587 eligible in queries by a human database programmer. The human programmer spent 26 total hours crafting queries compared to several minutes by LeafAI. Conclusions: Our work contributes a state-of-the-art data model-agnostic query generation system capable of conditional reasoning using a knowledge base. We demonstrate that LeafAI can rival an experienced human programmer in finding patients eligible for clinical trials.
The goal of temporal relation extraction is to infer the temporal relation between two events in the document. Supervised models are dominant in this task. In this work, we investigate ChatGPT's ability on zero-shot temporal relation extraction. We designed three different prompt techniques to break down the task and evaluate ChatGPT. Our experiments show that ChatGPT's performance has a large gap with that of supervised methods and can heavily rely on the design of prompts. We further demonstrate that ChatGPT can infer more small relation classes correctly than supervised methods. The current shortcomings of ChatGPT on temporal relation extraction are also discussed in this paper. We found that ChatGPT cannot keep consistency during temporal inference and it fails in actively long-dependency temporal inference.
Sentence-level relation extraction aims to identify the relation between two entities for a given sentence. The existing works mostly focus on obtaining a better entity representation and adopting a multi-label classifier for relation extraction. A major limitation of these works is that they ignore background relational knowledge and the interrelation between entity types and candidate relations. In this work, we propose a new paradigm, Contrastive Learning with Descriptive Relation Prompts(CTL-DRP), to jointly consider entity information, relational knowledge and entity type restrictions. In particular, we introduce an improved entity marker and descriptive relation prompts when generating contextual embedding, and utilize contrastive learning to rank the restricted candidate relations. The CTL-DRP obtains a competitive F1-score of 76.7% on TACRED. Furthermore, the new presented paradigm achieves F1-scores of 85.8% and 91.6% on TACREV and Re-TACRED respectively, which are both the state-of-the-art performance.
Large language models (LLMs) have made significant progress in various domains, including healthcare. However, the specialized nature of clinical language understanding tasks presents unique challenges and limitations that warrant further investigation. In this study, we conduct a comprehensive evaluation of state-of-the-art LLMs, namely GPT-3.5, GPT-4, and Bard, within the realm of clinical language understanding tasks. These tasks span a diverse range, including named entity recognition, relation extraction, natural language inference, semantic textual similarity, document classification, and question-answering. We also introduce a novel prompting strategy, self-questioning prompting (SQP), tailored to enhance LLMs' performance by eliciting informative questions and answers pertinent to the clinical scenarios at hand. Our evaluation underscores the significance of task-specific learning strategies and prompting techniques for improving LLMs' effectiveness in healthcare-related tasks. Additionally, our in-depth error analysis on the challenging relation extraction task offers valuable insights into error distribution and potential avenues for improvement using SQP. Our study sheds light on the practical implications of employing LLMs in the specialized domain of healthcare, serving as a foundation for future research and the development of potential applications in healthcare settings.