We propose a graph-based representation learning framework for video summarization. First, we convert an input video to a graph where nodes correspond to each of the video frames. Then, we impose sparsity on the graph by connecting only those pairs of nodes that are within a specified temporal distance. We then formulate the video summarization task as a binary node classification problem, precisely classifying video frames whether they should belong to the output summary video. A graph constructed this way aims to capture long-range interactions among video frames, and the sparsity ensures the model trains without hitting the memory and compute bottleneck. Experiments on two datasets(SumMe and TVSum) demonstrate the effectiveness of the proposed nimble model compared to existing state-of-the-art summarization approaches while being one order of magnitude more efficient in compute time and memory
Recently, heterogeneous graph neural networks (HGNNs) have achieved impressive success in representation learning by capturing long-range dependencies and heterogeneity at the node level. However, few existing studies have delved into the utilization of node attributes in heterogeneous information networks (HINs). In this paper, we investigate the impact of inter-node attribute disparities on HGNNs performance within the benchmark task, i.e., node classification, and empirically find that typical models exhibit significant performance decline when classifying nodes whose attributes markedly differ from their neighbors. To alleviate this issue, we propose a novel Attribute-Guided heterogeneous Information Networks representation learning model with Transformer (AGHINT), which allows a more effective aggregation of neighbor node information under the guidance of attributes. Specifically, AGHINT transcends the constraints of the original graph structure by directly integrating higher-order similar neighbor features into the learning process and modifies the message-passing mechanism between nodes based on their attribute disparities. Extensive experimental results on three real-world heterogeneous graph benchmarks with target node attributes demonstrate that AGHINT outperforms the state-of-the-art.
Most previous heterogeneous graph embedding models represent elements in a heterogeneous graph as vector representations in a low-dimensional Euclidean space. However, because heterogeneous graphs inherently possess complex structures, such as hierarchical or power-law structures, distortions can occur when representing them in Euclidean space. To overcome this limitation, we propose Hyperbolic Heterogeneous Graph Attention Networks (HHGAT) that learn vector representations in hyperbolic spaces with meta-path instances. We conducted experiments on three real-world heterogeneous graph datasets, demonstrating that HHGAT outperforms state-of-the-art heterogeneous graph embedding models in node classification and clustering tasks.
We present Bi-Level Attention-Based Relational Graph Convolutional Networks (BR-GCN), unique neural network architectures that utilize masked self-attentional layers with relational graph convolutions, to effectively operate on highly multi-relational data. BR-GCN models use bi-level attention to learn node embeddings through (1) node-level attention, and (2) relation-level attention. The node-level self-attentional layers use intra-relational graph interactions to learn relation-specific node embeddings using a weighted aggregation of neighborhood features in a sparse subgraph region. The relation-level self-attentional layers use inter-relational graph interactions to learn the final node embeddings using a weighted aggregation of relation-specific node embeddings. The BR-GCN bi-level attention mechanism extends Transformer-based multiplicative attention from the natural language processing (NLP) domain, and Graph Attention Networks (GAT)-based attention, to large-scale heterogeneous graphs (HGs). On node classification, BR-GCN outperforms baselines from 0.29% to 14.95% as a stand-alone model, and on link prediction, BR-GCN outperforms baselines from 0.02% to 7.40% as an auto-encoder model. We also conduct ablation studies to evaluate the quality of BR-GCN's relation-level attention and discuss how its learning of graph structure may be transferred to enrich other graph neural networks (GNNs). Through various experiments, we show that BR-GCN's attention mechanism is both scalable and more effective in learning compared to state-of-the-art GNNs.
In the domain of dynamic graph representation learning (DGRL), the efficient and comprehensive capture of temporal evolution within real-world networks is crucial. Spiking Neural Networks (SNNs), known as their temporal dynamics and low-power characteristic, offer an efficient solution for temporal processing in DGRL task. However, owing to the spike-based information encoding mechanism of SNNs, existing DGRL methods employed SNNs face limitations in their representational capacity. Given this issue, we propose a novel framework named Spike-induced Graph Neural Network (SiGNN) for learning enhanced spatialtemporal representations on dynamic graphs. In detail, a harmonious integration of SNNs and GNNs is achieved through an innovative Temporal Activation (TA) mechanism. Benefiting from the TA mechanism, SiGNN not only effectively exploits the temporal dynamics of SNNs but also adeptly circumvents the representational constraints imposed by the binary nature of spikes. Furthermore, leveraging the inherent adaptability of SNNs, we explore an in-depth analysis of the evolutionary patterns within dynamic graphs across multiple time granularities. This approach facilitates the acquisition of a multiscale temporal node representation.Extensive experiments on various real-world dynamic graph datasets demonstrate the superior performance of SiGNN in the node classification task.
In recent years, Graph Neural Networks (GNNs) have made significant advancements, particularly in tasks such as node classification, link prediction, and graph representation. However, challenges arise from biases that can be hidden not only in the node attributes but also in the connections between entities. Therefore, ensuring fairness in graph neural network learning has become a critical problem. To address this issue, we propose a novel model for training fairness-aware GNN, which enhances the Counterfactual Augmented Fair Graph Neural Network Framework (CAF). Our approach integrates Supervised Contrastive Loss and Environmental Loss to enhance both accuracy and fairness. Experimental validation on three real datasets demonstrates the superiority of our proposed model over CAF and several other existing graph-based learning methods.
Message Passing Graph Neural Networks are known to suffer from two problems that are sometimes believed to be diametrically opposed: over-squashing and over-smoothing. The former results from topological bottlenecks that hamper the information flow from distant nodes and are mitigated by spectral gap maximization, primarily, by means of edge additions. However, such additions often promote over-smoothing that renders nodes of different classes less distinguishable. Inspired by the Braess phenomenon, we argue that deleting edges can address over-squashing and over-smoothing simultaneously. This insight explains how edge deletions can improve generalization, thus connecting spectral gap optimization to a seemingly disconnected objective of reducing computational resources by pruning graphs for lottery tickets. To this end, we propose a more effective spectral gap optimization framework to add or delete edges and demonstrate its effectiveness on large heterophilic datasets.
This paper investigates a link between Graph Neural Networks (GNNs) and Binary Programming (BP) problems, laying the groundwork for GNNs to approximate solutions for these computationally challenging problems. By analyzing the sensitivity of BP problems, we are able to frame the solution of BP problems as a heterophilic node classification task. We then propose Binary-Programming GNN (BPGNN), an architecture that integrates graph representation learning techniques with BP-aware features to approximate BP solutions efficiently. Additionally, we introduce a self-supervised data generation mechanism, to enable efficient and tractable training data acquisition even for large-scale BP problems. Experimental evaluations of BPGNN across diverse BP problem sizes showcase its superior performance compared to exhaustive search and heuristic approaches. Finally, we discuss open challenges in the under-explored field of BP problems with GNNs.
The emerging graph neural networks (GNNs) have demonstrated impressive performance on the node classification problem in complex networks. However, existing GNNs are mainly devised to classify nodes in a (partially) labeled graph. To classify nodes in a newly-collected unlabeled graph, it is desirable to transfer label information from an existing labeled graph. To address this cross-graph node classification problem, we propose a graph infomax method that is domain adaptive. Node representations are computed through neighborhood aggregation. Mutual information is maximized between node representations and global summaries, encouraging node representations to encode the global structural information. Conditional adversarial networks are employed to reduce the domain discrepancy by aligning the multimodal distributions of node representations. Experimental results in real-world datasets validate the performance of our method in comparison with the state-of-the-art baselines.
Graph Neural Networks (GNNs) often perform better for high-degree nodes than low-degree nodes on node classification tasks. This degree bias can reinforce social marginalization by, e.g., privileging celebrities and other high-degree actors in social networks during social and content recommendation. While researchers have proposed numerous hypotheses for why GNN degree bias occurs, we find via a survey of 38 degree bias papers that these hypotheses are often not rigorously validated, and can even be contradictory. Thus, we provide an analysis of the origins of degree bias in message-passing GNNs with different graph filters. We prove that high-degree test nodes tend to have a lower probability of misclassification regardless of how GNNs are trained. Moreover, we show that degree bias arises from a variety of factors that are associated with a node's degree (e.g., homophily of neighbors, diversity of neighbors). Furthermore, we show that during training, some GNNs may adjust their loss on low-degree nodes more slowly than on high-degree nodes; however, with sufficiently many epochs of training, message-passing GNNs can achieve their maximum possible training accuracy, which is not significantly limited by their expressive power. Throughout our analysis, we connect our findings to previously-proposed hypotheses for the origins of degree bias, supporting and unifying some while drawing doubt to others. We validate our theoretical findings on 8 common real-world networks, and based on our theoretical and empirical insights, describe a roadmap to alleviate degree bias.
Heterogeneous Graphs (HGs) effectively model complex relationships in the real world through multi-type nodes and edges. In recent years, inspired by self-supervised learning (SSL), contrastive learning (CL)-based Heterogeneous Graphs Neural Networks (HGNNs) have shown great potential in utilizing data augmentation and contrastive discriminators for downstream tasks. However, data augmentation remains limited due to the graph data's integrity. Furthermore, the contrastive discriminators suffer from sampling bias and lack local heterogeneous information. To tackle the above limitations, we propose a novel Generative-Contrastive Heterogeneous Graph Neural Network (GC-HGNN). Specifically, we propose a heterogeneous graph generative learning method that enhances CL-based paradigm. This paradigm includes: 1) A contrastive view augmentation strategy using a masked autoencoder. 2) Position-aware and semantics-aware positive sample sampling strategy for generating hard negative samples. 3) A hierarchical contrastive learning strategy aimed at capturing local and global information. Furthermore, the hierarchical contrastive learning and sampling strategies aim to constitute an enhanced contrastive discriminator under the generative-contrastive perspective. Finally, we compare our model with seventeen baselines on eight real-world datasets. Our model outperforms the latest baselines on node classification and link prediction tasks.
Hypergraphs are marked by complex topology, expressing higher-order interactions among multiple nodes with hyperedges, and better capturing the topology is essential for effective representation learning. Recent advances in generative self-supervised learning (SSL) suggest that hypergraph neural networks learned from generative self supervision have the potential to effectively encode the complex hypergraph topology. Designing a generative SSL strategy for hypergraphs, however, is not straightforward. Questions remain with regard to its generative SSL task, connection to downstream tasks, and empirical properties of learned representations. In light of the promises and challenges, we propose a novel generative SSL strategy for hypergraphs. We first formulate a generative SSL task on hypergraphs, hyperedge filling, and highlight its theoretical connection to node classification. Based on the generative SSL task, we propose a hypergraph SSL method, HypeBoy. HypeBoy learns effective general-purpose hypergraph representations, outperforming 16 baseline methods across 11 benchmark datasets.
The choice of a graph learning (GL) model (i.e., a GL algorithm and its hyperparameter settings) has a significant impact on the performance of downstream tasks. However, selecting the right GL model becomes increasingly difficult and time consuming as more and more GL models are developed. Accordingly, it is of great significance and practical value to equip users of GL with the ability to perform a near-instantaneous selection of an effective GL model without manual intervention. Despite the recent attempts to tackle this important problem, there has been no comprehensive benchmark environment to evaluate the performance of GL model selection methods. To bridge this gap, we present GLEMOS in this work, a comprehensive benchmark for instantaneous GL model selection that makes the following contributions. (i) GLEMOS provides extensive benchmark data for fundamental GL tasks, i.e., link prediction and node classification, including the performances of 366 models on 457 graphs on these tasks. (ii) GLEMOS designs multiple evaluation settings, and assesses how effectively representative model selection techniques perform in these different settings. (iii) GLEMOS is designed to be easily extended with new models, new graphs, and new performance records. (iv) Based on the experimental results, we discuss the limitations of existing approaches and highlight future research directions. To promote research on this significant problem, we make the benchmark data and code publicly available at https://github.com/facebookresearch/glemos.
Heterogeneous graphs are ubiquitous in real-world applications because they can represent various relationships between different types of entities. Therefore, learning embeddings in such graphs is a critical problem in graph machine learning. However, existing solutions for this problem fail to scale to large heterogeneous graphs due to their high computational complexity. To address this issue, we propose a Multi-Level Embedding framework of nodes on a heterogeneous graph (HeteroMILE) - a generic methodology that allows contemporary graph embedding methods to scale to large graphs. HeteroMILE repeatedly coarsens the large sized graph into a smaller size while preserving the backbone structure of the graph before embedding it, effectively reducing the computational cost by avoiding time-consuming processing operations. It then refines the coarsened embedding to the original graph using a heterogeneous graph convolution neural network. We evaluate our approach using several popular heterogeneous graph datasets. The experimental results show that HeteroMILE can substantially reduce computational time (approximately 20x speedup) and generate an embedding of better quality for link prediction and node classification.
Node classification on graphs is of great importance in many applications. Due to the limited labeling capability and evolution in real-world open scenarios, novel classes can emerge on unlabeled testing nodes. However, little attention has been paid to novel class discovery on graphs. Discovering novel classes is challenging as novel and known class nodes are correlated by edges, which makes their representations indistinguishable when applying message passing GNNs. Furthermore, the novel classes lack labeling information to guide the learning process. In this paper, we propose a novel method Open-world gRAph neuraL network (ORAL) to tackle these challenges. ORAL first detects correlations between classes through semi-supervised prototypical learning. Inter-class correlations are subsequently eliminated by the prototypical attention network, leading to distinctive representations for different classes. Furthermore, to fully explore multi-scale graph features for alleviating label deficiencies, ORAL generates pseudo-labels by aligning and ensembling label estimations from multiple stacked prototypical attention networks. Extensive experiments on several benchmark datasets show the effectiveness of our proposed method.
Continuous graph neural models based on differential equations have expanded the architecture of graph neural networks (GNNs). Due to the connection between graph diffusion and message passing, diffusion-based models have been widely studied. However, diffusion naturally drives the system towards an equilibrium state, leading to issues like over-smoothing. To this end, we propose GRADE inspired by graph aggregation-diffusion equations, which includes the delicate balance between nonlinear diffusion and aggregation induced by interaction potentials. The node representations obtained through aggregation-diffusion equations exhibit metastability, indicating that features can aggregate into multiple clusters. In addition, the dynamics within these clusters can persist for long time periods, offering the potential to alleviate over-smoothing effects. This nonlinear diffusion in our model generalizes existing diffusion-based models and establishes a connection with classical GNNs. We prove that GRADE achieves competitive performance across various benchmarks and alleviates the over-smoothing issue in GNNs evidenced by the enhanced Dirichlet energy.
While electronic health records (EHRs) are widely used across various applications in healthcare, most applications use the EHRs in their raw (tabular) format. Relying on raw or simple data pre-processing can greatly limit the performance or even applicability of downstream tasks using EHRs. To address this challenge, we present HealthGAT, a novel graph attention network framework that utilizes a hierarchical approach to generate embeddings from EHR, surpassing traditional graph-based methods. Our model iteratively refines the embeddings for medical codes, resulting in improved EHR data analysis. We also introduce customized EHR-centric auxiliary pre-training tasks to leverage the rich medical knowledge embedded within the data. This approach provides a comprehensive analysis of complex medical relationships and offers significant advancement over standard data representation techniques. HealthGAT has demonstrated its effectiveness in various healthcare scenarios through comprehensive evaluations against established methodologies. Specifically, our model shows outstanding performance in node classification and downstream tasks such as predicting readmissions and diagnosis classifications. Our code is available at https://github.com/healthylaife/HealthGAT
Under circumstances of heterophily, where nodes with different labels tend to be connected based on semantic meanings, Graph Neural Networks (GNNs) often exhibit suboptimal performance. Current studies on graph heterophily mainly focus on aggregation calibration or neighbor extension and address the heterophily issue by utilizing node features or structural information to improve GNN representations. In this paper, we propose and demonstrate that the valuable semantic information inherent in heterophily can be utilized effectively in graph learning by investigating the distribution of neighbors for each individual node within the graph. The theoretical analysis is carried out to demonstrate the efficacy of the idea in enhancing graph learning. Based on this analysis, we propose HiGNN, an innovative approach that constructs an additional new graph structure, that integrates heterophilous information by leveraging node distribution to enhance connectivity between nodes that share similar semantic characteristics. We conduct empirical assessments on node classification tasks using both homophilous and heterophilous benchmark datasets and compare HiGNN to popular GNN baselines and SoTA methods, confirming the effectiveness in improving graph representations. In addition, by incorporating heterophilous information, we demonstrate a notable enhancement in existing GNN-based approaches, and the homophily degree across real-world datasets, thus affirming the efficacy of our approach.
Graph representation learning is a fundamental research issue in various domains of applications, of which the inductive learning problem is particularly challenging as it requires models to generalize to unseen graph structures during inference. In recent years, graph neural networks (GNNs) have emerged as powerful graph models for inductive learning tasks such as node classification, whereas they typically heavily rely on the annotated nodes under a fully supervised training setting. Compared with the GNN-based methods, variational graph auto-encoders (VGAEs) are known to be more generalizable to capture the internal structural information of graphs independent of node labels and have achieved prominent performance on multiple unsupervised learning tasks. However, so far there is still a lack of work focusing on leveraging the VGAE framework for inductive learning, due to the difficulties in training the model in a supervised manner and avoiding over-fitting the proximity information of graphs. To solve these problems and improve the model performance of VGAEs for inductive graph representation learning, in this work, we propose the Self-Label Augmented VGAE model. To leverage the label information for training, our model takes node labels as one-hot encoded inputs and then performs label reconstruction in model training. To overcome the scarcity problem of node labels for semi-supervised settings, we further propose the Self-Label Augmentation Method (SLAM), which uses pseudo labels generated by our model with a node-wise masking approach to enhance the label information. Experiments on benchmark inductive learning graph datasets verify that our proposed model archives promising results on node classification with particular superiority under semi-supervised learning settings.
We propose DyGFormer, a new Transformer-based architecture for dynamic graph learning. DyGFormer is conceptually simple and only needs to learn from nodes' historical first-hop interactions by: (1) a neighbor co-occurrence encoding scheme that explores the correlations of the source node and destination node based on their historical sequences; (2) a patching technique that divides each sequence into multiple patches and feeds them to Transformer, allowing the model to effectively and efficiently benefit from longer histories. We also introduce DyGLib, a unified library with standard training pipelines, extensible coding interfaces, and comprehensive evaluating protocols to promote reproducible, scalable, and credible dynamic graph learning research. By performing exhaustive experiments on thirteen datasets for dynamic link prediction and dynamic node classification tasks, we find that DyGFormer achieves state-of-the-art performance on most of the datasets, demonstrating its effectiveness in capturing nodes' correlations and long-term temporal dependencies. Moreover, some results of baselines are inconsistent with previous reports, which may be caused by their diverse but less rigorous implementations, showing the importance of DyGLib. All the used resources are publicly available at https://github.com/yule-BUAA/DyGLib.