Structure encoding has proven to be the key feature to distinguishing links in a graph. However, Structure encoding in the temporal graph keeps changing as the graph evolves, repeatedly computing such features can be time-consuming due to the high-order subgraph construction. We develop the Co-Neighbor Encoding Schema (CNES) to address this issue. Instead of recomputing the feature by the link, CNES stores information in the memory to avoid redundant calculations. Besides, unlike the existing memory-based dynamic graph learning method that stores node hidden states, we introduce a hashtable-based memory to compress the adjacency matrix for efficient structure feature construction and updating with vector computation in parallel. Furthermore, CNES introduces a Temporal-Diverse Memory to generate long-term and short-term structure encoding for neighbors with different structural information. A dynamic graph learning framework, Co-Neighbor Encoding Network (CNE-N), is proposed using the aforementioned techniques. Extensive experiments on thirteen public datasets verify the effectiveness and efficiency of the proposed method.
Knowledge Tracing aims to assess student learning states by predicting their performance in answering questions. Different from the existing research which utilizes fixed-length learning sequence to obtain the student states and regards KT as a static problem, this work is motivated by three dynamical characteristics: 1) The scales of students answering records are constantly growing; 2) The semantics of time intervals between the records vary; 3) The relationships between students, questions and concepts are evolving. The three dynamical characteristics above contain the great potential to revolutionize the existing knowledge tracing methods. Along this line, we propose a Dynamic Graph-based Knowledge Tracing model, namely DyGKT. In particular, a continuous-time dynamic question-answering graph for knowledge tracing is constructed to deal with the infinitely growing answering behaviors, and it is worth mentioning that it is the first time dynamic graph learning technology is used in this field. Then, a dual time encoder is proposed to capture long-term and short-term semantics among the different time intervals. Finally, a multiset indicator is utilized to model the evolving relationships between students, questions, and concepts via the graph structural feature. Numerous experiments are conducted on five real-world datasets, and the results demonstrate the superiority of our model. All the used resources are publicly available at https://github.com/PengLinzhi/DyGKT.
In recent years, spiking neural networks (SNNs) have attracted substantial interest due to their potential to replicate the energy-efficient and event-driven processing of biological neurons. Despite this, the application of SNNs in graph representation learning, particularly for non-Euclidean data, remains underexplored, and the influence of spiking dynamics on graph learning is not yet fully understood. This work seeks to address these gaps by examining the unique properties and benefits of spiking dynamics in enhancing graph representation learning. We propose a spike-based graph neural network model that incorporates spiking dynamics, enhanced by a novel spatial-temporal feature normalization (STFN) technique, to improve training efficiency and model stability. Our detailed analysis explores the impact of rate coding and temporal coding on SNN performance, offering new insights into their advantages for deep graph networks and addressing challenges such as the oversmoothing problem. Experimental results demonstrate that our SNN models can achieve competitive performance with state-of-the-art graph neural networks (GNNs) while considerably reducing computational costs, highlighting the potential of SNNs for efficient neuromorphic computing applications in complex graph-based scenarios.
Acquiring reviewers for academic submissions is a challenging recommendation scenario. Recent graph learning-driven models have made remarkable progress in the field of recommendation, but their performance in the academic reviewer recommendation task may suffer from a significant false negative issue. This arises from the assumption that unobserved edges represent negative samples. In fact, the mechanism of anonymous review results in inadequate exposure of interactions between reviewers and submissions, leading to a higher number of unobserved interactions compared to those caused by reviewers declining to participate. Therefore, investigating how to better comprehend the negative labeling of unobserved interactions in academic reviewer recommendations is a significant challenge. This study aims to tackle the ambiguous nature of unobserved interactions in academic reviewer recommendations. Specifically, we propose an unsupervised Pseudo Neg-Label strategy to enhance graph contrastive learning (GCL) for recommending reviewers for academic submissions, which we call RevGNN. RevGNN utilizes a two-stage encoder structure that encodes both scientific knowledge and behavior using Pseudo Neg-Label to approximate review preference. Extensive experiments on three real-world datasets demonstrate that RevGNN outperforms all baselines across four metrics. Additionally, detailed further analyses confirm the effectiveness of each component in RevGNN.
Continual graph learning (CGL) is an important and challenging task that aims to extend static GNNs to dynamic task flow scenarios. As one of the mainstream CGL methods, the experience replay (ER) method receives widespread attention due to its superior performance. However, existing ER methods focus on identifying samples by feature significance or topological relevance, which limits their utilization of comprehensive graph data. In addition, the topology-based ER methods only consider local topological information and add neighboring nodes to the buffer, which ignores the global topological information and increases memory overhead. To bridge these gaps, we propose a novel method called Feature-Topology Fusion-based Experience Replay (FTF-ER) to effectively mitigate the catastrophic forgetting issue with enhanced efficiency. Specifically, from an overall perspective to maximize the utilization of the entire graph data, we propose a highly complementary approach including both feature and global topological information, which can significantly improve the effectiveness of the sampled nodes. Moreover, to further utilize global topological information, we propose Hodge Potential Score (HPS) as a novel module to calculate the topological importance of nodes. HPS derives a global node ranking via Hodge decomposition on graphs, providing more accurate global topological information compared to neighbor sampling. By excluding neighbor sampling, HPS significantly reduces buffer storage costs for acquiring topological information and simultaneously decreases training time. Compared with state-of-the-art methods, FTF-ER achieves a significant improvement of 3.6% in AA and 7.1% in AF on the OGB-Arxiv dataset, demonstrating its superior performance in the class-incremental learning setting.
Summarizing web graphs is challenging due to the heterogeneity of the modeled information and its changes over time. We investigate the use of neural networks for lifelong graph summarization. Assuming we observe the web graph at a certain time, we train the networks to summarize graph vertices. We apply this trained network to summarize the vertices of the changed graph at the next point in time. Subsequently, we continue training and evaluating the network to perform lifelong graph summarization. We use the GNNs Graph-MLP and GraphSAINT, as well as an MLP baseline, to summarize the temporal graphs. We compare $1$-hop and $2$-hop summaries. We investigate the impact of reusing parameters from a previous snapshot by measuring the backward and forward transfer and the forgetting rate of the neural networks. Our extensive experiments on ten weekly snapshots of a web graph with over $100$M edges, sampled in 2012 and 2022, show that all networks predominantly use $1$-hop information to determine the summary, even when performing $2$-hop summarization. Due to the heterogeneity of web graphs, in some snapshots, the $2$-hop summary produces over ten times more vertex summaries than the $1$-hop summary. When using the network trained on the last snapshot from 2012 and applying it to the first snapshot of 2022, we observe a strong drop in accuracy. We attribute this drop over the ten-year time warp to the strongly increased heterogeneity of the web graph in 2022.
Predicting traffic accidents is the key to sustainable city management, which requires effective address of the dynamic and complex spatiotemporal characteristics of cities. Current data-driven models often struggle with data sparsity and typically overlook the integration of diverse urban data sources and the high-order dependencies within them. Additionally, they frequently rely on predefined topologies or weights, limiting their adaptability in spatiotemporal predictions. To address these issues, we introduce the Spatiotemporal Multiview Adaptive HyperGraph Learning (SMA-Hyper) model, a dynamic deep learning framework designed for traffic accident prediction. Building on previous research, this innovative model incorporates dual adaptive spatiotemporal graph learning mechanisms that enable high-order cross-regional learning through hypergraphs and dynamic adaptation to evolving urban data. It also utilises contrastive learning to enhance global and local data representations in sparse datasets and employs an advance attention mechanism to fuse multiple views of accident data and urban functional features, thereby enriching the contextual understanding of risk factors. Extensive testing on the London traffic accident dataset demonstrates that the SMA-Hyper model significantly outperforms baseline models across various temporal horizons and multistep outputs, affirming the effectiveness of its multiview fusion and adaptive learning strategies. The interpretability of the results further underscores its potential to improve urban traffic management and safety by leveraging complex spatiotemporal urban data, offering a scalable framework adaptable to diverse urban environments.
Inferring gene regulatory networks (GRNs) from single-cell RNA sequencing (scRNA-seq) data is a complex challenge that requires capturing the intricate relationships between genes and their regulatory interactions. In this study, we tackle this challenge by leveraging the single-cell BERT-based pre-trained transformer model (scBERT), trained on extensive unlabeled scRNA-seq data, to augment structured biological knowledge from existing GRNs. We introduce a novel joint graph learning approach that combines the rich contextual representations learned by pre-trained single-cell language models with the structured knowledge encoded in GRNs using graph neural networks (GNNs). By integrating these two modalities, our approach effectively reasons over boththe gene expression level constraints provided by the scRNA-seq data and the structured biological knowledge inherent in GRNs. We evaluate our method on human cell benchmark datasets from the BEELINE study with cell type-specific ground truth networks. The results demonstrate superior performance over current state-of-the-art baselines, offering a deeper understanding of cellular regulatory mechanisms.
Since Multimodal Emotion Recognition in Conversation (MERC) can be applied to public opinion monitoring, intelligent dialogue robots, and other fields, it has received extensive research attention in recent years. Unlike traditional unimodal emotion recognition, MERC can fuse complementary semantic information between multiple modalities (e.g., text, audio, and vision) to improve emotion recognition. However, previous work ignored the inter-modal alignment process and the intra-modal noise information before multimodal fusion but directly fuses multimodal features, which will hinder the model for representation learning. In this study, we have developed a novel approach called Masked Graph Learning with Recursive Alignment (MGLRA) to tackle this problem, which uses a recurrent iterative module with memory to align multimodal features, and then uses the masked GCN for multimodal feature fusion. First, we employ LSTM to capture contextual information and use a graph attention-filtering mechanism to eliminate noise effectively within the modality. Second, we build a recurrent iteration module with a memory function, which can use communication between different modalities to eliminate the gap between modalities and achieve the preliminary alignment of features between modalities. Then, a cross-modal multi-head attention mechanism is introduced to achieve feature alignment between modalities and construct a masked GCN for multimodal feature fusion, which can perform random mask reconstruction on the nodes in the graph to obtain better node feature representation. Finally, we utilize a multilayer perceptron (MLP) for emotion recognition. Extensive experiments on two benchmark datasets (i.e., IEMOCAP and MELD) demonstrate that {MGLRA} outperforms state-of-the-art methods.
Graph Neural Networks (GNNs) have attracted immense attention in the past decade due to their numerous real-world applications built around graph-structured data. On the other hand, Large Language Models (LLMs) with extensive pretrained knowledge and powerful semantic comprehension abilities have recently shown a remarkable ability to benefit applications using vision and text data. In this paper, we investigate how LLMs can be leveraged in a computationally efficient fashion to benefit rich graph-structured data, a modality relatively unexplored in LLM literature. Prior works in this area exploit LLMs to augment every node features in an ad-hoc fashion (not scalable for large graphs), use natural language to describe the complex structural information of graphs, or perform computationally expensive finetuning of LLMs in conjunction with GNNs. We propose E-LLaGNN (Efficient LLMs augmented GNNs), a framework with an on-demand LLM service that enriches message passing procedure of graph learning by enhancing a limited fraction of nodes from the graph. More specifically, E-LLaGNN relies on sampling high-quality neighborhoods using LLMs, followed by on-demand neighborhood feature enhancement using diverse prompts from our prompt catalog, and finally information aggregation using message passing from conventional GNN architectures. We explore several heuristics-based active node selection strategies to limit the computational and memory footprint of LLMs when handling millions of nodes. Through extensive experiments & ablation on popular graph benchmarks of varying scales (Cora, PubMed, ArXiv, & Products), we illustrate the effectiveness of our E-LLaGNN framework and reveal many interesting capabilities such as improved gradient flow in deep GNNs, LLM-free inference ability etc.
In this study, we present the Graph Sub-Graph Network (GSN), a novel hybrid image classification model merging the strengths of Convolutional Neural Networks (CNNs) for feature extraction and Graph Neural Networks (GNNs) for structural modeling. GSN employs k-means clustering to group graph nodes into clusters, facilitating the creation of subgraphs. These subgraphs are then utilized to learn representative `atoms` for dictionary learning, enabling the identification of sparse, class-distinguishable features. This integrated approach is particularly relevant in domains like medical imaging, where discerning subtle feature differences is crucial for accurate classification. To evaluate the performance of our proposed GSN, we conducted experiments on benchmark datasets, including PascalVOC and HAM10000. Our results demonstrate the efficacy of our model in optimizing dictionary configurations across varied classes, which contributes to its effectiveness in medical classification tasks. This performance enhancement is primarily attributed to the integration of CNNs, GNNs, and graph learning techniques, which collectively improve the handling of datasets with limited labeled examples. Specifically, our experiments show that the model achieves a higher accuracy on benchmark datasets such as Pascal VOC and HAM10000 compared to conventional CNN approaches.
Graph Out-of-Distribution (OOD), requiring that models trained on biased data generalize to the unseen test data, has considerable real-world applications. One of the most mainstream methods is to extract the invariant subgraph by aligning the original and augmented data with the help of environment augmentation. However, these solutions might lead to the loss or redundancy of semantic subgraphs and result in suboptimal generalization. To address this challenge, we propose exploiting Probability of Necessity and Sufficiency (PNS) to extract sufficient and necessary invariant substructures. Beyond that, we further leverage the domain variant subgraphs related to the labels to boost the generalization performance in an ensemble manner. Specifically, we first consider the data generation process for graph data. Under mild conditions, we show that the sufficient and necessary invariant subgraph can be extracted by minimizing an upper bound, built on the theoretical advance of the probability of necessity and sufficiency. To further bridge the theory and algorithm, we devise the model called Sufficiency and Necessity Inspired Graph Learning (SNIGL), which ensembles an invariant subgraph classifier on top of latent sufficient and necessary invariant subgraphs, and a domain variant subgraph classifier specific to the test domain for generalization enhancement. Experimental results demonstrate that our SNIGL model outperforms the state-of-the-art techniques on six public benchmarks, highlighting its effectiveness in real-world scenarios.
Node classification is an essential problem in graph learning. However, many models typically obtain unsatisfactory performance when applied to few-shot scenarios. Some studies have attempted to combine meta-learning with graph neural networks to solve few-shot node classification on graphs. Despite their promising performance, some limitations remain. First, they employ the node encoding mechanism of homophilic graphs to learn node embeddings, even in heterophilic graphs. Second, existing models based on meta-learning ignore the interference of randomness in the learning process. Third, they are trained using only limited labeled nodes within the specific task, without explicitly utilizing numerous unlabeled nodes. Finally, they treat almost all sampled tasks equally without customizing them for their uniqueness. To address these issues, we propose a novel framework for few-shot node classification called Meta-GPS++. Specifically, we first adopt an efficient method to learn discriminative node representations on homophilic and heterophilic graphs. Then, we leverage a prototype-based approach to initialize parameters and contrastive learning for regularizing the distribution of node embeddings. Moreover, we apply self-training to extract valuable information from unlabeled nodes. Additionally, we adopt S$^2$ (scaling & shifting) transformation to learn transferable knowledge from diverse tasks. The results on real-world datasets show the superiority of Meta-GPS++. Our code is available here.
Recent years have witnessed a thriving growth of computing facilities connected at the network edge, cultivating edge networks as a fundamental infrastructure for supporting miscellaneous intelligent services.Meanwhile, Artificial Intelligence (AI) frontiers have extrapolated to the graph domain and promoted Graph Intelligence (GI). Given the inherent relation between graphs and networks, the interdiscipline of graph learning and edge networks, i.e., Edge GI or EGI, has revealed a novel interplay between them -- GI aids in optimizing edge networks, while edge networks facilitate GI model deployment. Driven by this delicate closed-loop, EGI is recognized as a promising solution to fully unleash the potential of edge computing power and is garnering growing attention. Nevertheless, research on EGI remains nascent, and there is a soaring demand within both the communications and AI communities for a dedicated venue to share recent advancements. To this end, this paper promotes the concept of EGI, explores its scope and core principles, and conducts a comprehensive survey concerning recent research efforts on this emerging field. Specifically, this paper introduces and discusses: 1) fundamentals of edge computing and graph learning,2) emerging techniques centering on the closed loop between graph intelligence and edge networks, and 3) open challenges and research opportunities of future EGI. By bridging the gap across communication, networking, and graph learning areas, we believe that this survey can garner increased attention, foster meaningful discussions, and inspire further research ideas in EGI.
We propose GLAudio: Graph Learning on Audio representation of the node features and the connectivity structure. This novel architecture propagates the node features through the graph network according to the discrete wave equation and then employs a sequence learning architecture to learn the target node function from the audio wave signal. This leads to a new paradigm of learning on graph-structured data, in which information propagation and information processing are separated into two distinct steps. We theoretically characterize the expressivity of our model, introducing the notion of the receptive field of a vertex, and investigate our model's susceptibility to over-smoothing and over-squashing both theoretically as well as experimentally on various graph datasets.
Graph Transformer is a new architecture that surpasses GNNs in graph learning. While there emerge inspiring algorithm advancements, their practical adoption is still limited, particularly on real-world graphs involving up to millions of nodes. We observe existing graph transformers fail on large-scale graphs mainly due to heavy computation, limited scalability and inferior model quality. Motivated by these observations, we propose TorchGT, the first efficient, scalable, and accurate graph transformer training system. TorchGT optimizes training at different levels. At algorithm level, by harnessing the graph sparsity, TorchGT introduces a Dual-interleaved Attention which is computation-efficient and accuracy-maintained. At runtime level, TorchGT scales training across workers with a communication-light Cluster-aware Graph Parallelism. At kernel level, an Elastic Computation Reformation further optimizes the computation by reducing memory access latency in a dynamic way. Extensive experiments demonstrate that TorchGT boosts training by up to 62.7x and supports graph sequence lengths of up to 1M.
Dynamic link prediction is a critical task in the analysis of evolving networks, with applications ranging from recommender systems to economic exchanges. However, the concept of the temporal receptive field, which refers to the temporal context that models use for making predictions, has been largely overlooked and insufficiently analyzed in existing research. In this study, we present a comprehensive analysis of the temporal receptive field in dynamic graph learning. By examining multiple datasets and models, we formalize the role of temporal receptive field and highlight their crucial influence on predictive accuracy. Our results demonstrate that appropriately chosen temporal receptive field can significantly enhance model performance, while for some models, overly large windows may introduce noise and reduce accuracy. We conduct extensive benchmarking to validate our findings, ensuring that all experiments are fully reproducible. Code is available at https://github.com/ykrmm/BenchmarkTW .
Fairness-aware graph learning has gained increasing attention in recent years. Nevertheless, there lacks a comprehensive benchmark to evaluate and compare different fairness-aware graph learning methods, which blocks practitioners from choosing appropriate ones for broader real-world applications. In this paper, we present an extensive benchmark on ten representative fairness-aware graph learning methods. Specifically, we design a systematic evaluation protocol and conduct experiments on seven real-world datasets to evaluate these methods from multiple perspectives, including group fairness, individual fairness, the balance between different fairness criteria, and computational efficiency. Our in-depth analysis reveals key insights into the strengths and limitations of existing methods. Additionally, we provide practical guidance for applying fairness-aware graph learning methods in applications. To the best of our knowledge, this work serves as an initial step towards comprehensively understanding representative fairness-aware graph learning methods to facilitate future advancements in this area.
Given partial measurements of a time-varying graph signal, we propose an algorithm to simultaneously estimate both the underlying graph topology and the missing measurements. The proposed algorithm operates by training an interpretable neural network, designed from the unrolling framework. The proposed technique can be used both as a graph learning and a graph signal reconstruction algorithm. This work enhances prior work in graph signal reconstruction by allowing the underlying graph to be unknown; and also builds on prior work in graph learning by tailoring the learned graph to the signal reconstruction task.
Lane topology, which is usually modeled by a centerline graph, is essential for high-level autonomous driving. For a high-quality graph, both topology connectivity and spatial continuity of centerline segments are critical. However, most of existing approaches pay more attention to connectivity while neglect the continuity. Such kind of centerline graph usually cause problem to planning of autonomous driving. To overcome this problem, we present an end-to-end network, CGNet, with three key modules: 1)Junction Aware Query Enhancement module, which provides positional prior to accurately predict junction points; 2)B\'ezier Space Connection module, which enforces continuity constraints on any two topologically connected segments in a B\'ezier space; 3) Iterative Topology Refinement module, which is a graph-based network with memory to iteratively refine the predicted topological connectivity. CGNet achieves state-of-the-art performance on both nuScenes and Argoverse2 datasets.