Machine Learning (ML) is one of the most exciting and dynamic areas of modern research and application. The purpose of this review is to provide an introduction to the core concepts and tools of machine learning in a manner easily understood and intuitive to physicists. The review begins by covering fundamental concepts in ML and modern statistics such as the bias-variance tradeoff, overfitting, regularization, generalization, and gradient descent before moving on to more advanced topics in both supervised and unsupervised learning. Topics covered in the review include ensemble models, deep learning and neural networks, clustering and data visualization, energy-based models (including MaxEnt models and Restricted Boltzmann Machines), and variational methods. Throughout, we emphasize the many natural connections between ML and statistical physics. A notable aspect of the review is the use of Python Jupyter notebooks to introduce modern ML/statistical packages to readers using physics-inspired datasets (the Ising Model and Monte-Carlo simulations of supersymmetric decays of proton-proton collisions). We conclude with an extended outlook discussing possible uses of machine learning for furthering our understanding of the physical world as well as open problems in ML where physicists may be able to contribute. (Notebooks are available at https://physics.bu.edu/~pankajm/MLnotebooks.html )
Excluding irrelevant features in a pattern recognition task plays an important role in maintaining a simpler machine learning model and optimizing the computational efficiency. Nowadays with the rise of large scale datasets, feature selection is in great demand as it becomes a central issue when facing high-dimensional datasets. The present study provides a new measure of saliency for features by employing a Sensitivity Analysis (SA) technique called the extended Fourier amplitude sensitivity test, and a well-trained Feedforward Neural Network (FNN) model, which ultimately leads to the selection of a promising optimal feature subset. Ideas of the paper are mainly demonstrated based on adopting FNN model for feature selection in classification problems. But in the end, a generalization framework is discussed in order to give insights into the usage in regression problems as well as expressing how other function approximate models can be deployed. Effectiveness of the proposed method is verified by result analysis and data visualization for a series of experiments over several well-known datasets drawn from UCI machine learning repository.
Rapidly creating effective visualizations using expressive grammars is challenging for users who have limited time and limited skills in statistics and data visualization. Even high-level, dedicated visualization tools often require users to manually select among data attributes, decide which transformations to apply, and specify mappings between visual encoding variables and raw or transformed attributes. In this paper we introduce Data2Vis, a neural translation model for automatically generating visualizations from given datasets. We formulate visualization generation as a sequence to sequence translation problem where data specifications are mapped to visualization specifications in a declarative language (Vega-Lite). To this end, we train a multilayered attention-based recurrent neural network (RNN) with long short-term memory (LSTM) units on a corpus of visualization specifications. Qualitative results show that our model learns the vocabulary and syntax for a valid visualization specification, appropriate transformations (count, bins, mean) and how to use common data selection patterns that occur within data visualizations. Data2Vis generates visualizations that are comparable to manually-created visualizations in a fraction of the time, with potential to learn more complex visualization strategies at scale.
Parametric embedding methods such as parametric t-SNE (pt-SNE) have been widely adopted for data visualization and out-of-sample data embedding without further computationally expensive optimization or approximation. However, the performance of pt-SNE is highly sensitive to the hyper-parameter batch size due to conflicting optimization goals, and often produces dramatically different embeddings with different choices of user-defined perplexities. To effectively solve these issues, we present parametric t-distributed stochastic exemplar-centered embedding methods. Our strategy learns embedding parameters by comparing given data only with precomputed exemplars, resulting in a cost function with linear computational and memory complexity, which is further reduced by noise contrastive samples. Moreover, we propose a shallow embedding network with high-order feature interactions for data visualization, which is much easier to tune but produces comparable performance in contrast to a deep neural network employed by pt-SNE. We empirically demonstrate, using several benchmark datasets, that our proposed methods significantly outperform pt-SNE in terms of robustness, visual effects, and quantitative evaluations.
Recent advances in deep neuroevolution have demonstrated that evolutionary algorithms, such as evolution strategies (ES) and genetic algorithms (GA), can scale to train deep neural networks to solve difficult reinforcement learning (RL) problems. However, it remains a challenge to analyze and interpret the underlying process of neuroevolution in such high dimensions. To begin to address this challenge, this paper presents an interactive data visualization tool called VINE (Visual Inspector for NeuroEvolution) aimed at helping neuroevolution researchers and end-users better understand and explore this family of algorithms. VINE works seamlessly with a breadth of neuroevolution algorithms, including ES and GA, and addresses the difficulty of observing the underlying dynamics of the learning process through an interactive visualization of the evolving agent's behavior characterizations over generations. As neuroevolution scales to neural networks with millions or more connections, visualization tools like VINE that offer fresh insight into the underlying dynamics of evolution become increasingly valuable and important for inspiring new innovations and applications.
A first line of attack in exploratory data analysis is data visualization, i.e., generating a 2-dimensional representation of data that makes clusters of similar points visually identifiable. Standard Johnson-Lindenstrauss dimensionality reduction does not produce data visualizations. The t-SNE heuristic of van der Maaten and Hinton, which is based on non-convex optimization, has become the de facto standard for visualization in a wide range of applications. This work gives a formal framework for the problem of data visualization - finding a 2-dimensional embedding of clusterable data that correctly separates individual clusters to make them visually identifiable. We then give a rigorous analysis of the performance of t-SNE under a natural, deterministic condition on the "ground-truth" clusters (similar to conditions assumed in earlier analyses of clustering) in the underlying data. These are the first provable guarantees on t-SNE for constructing good data visualizations. We show that our deterministic condition is satisfied by considerably general probabilistic generative models for clusterable data such as mixtures of well-separated log-concave distributions. Finally, we give theoretical evidence that t-SNE provably succeeds in partially recovering cluster structure even when the above deterministic condition is not met.
To see color, the human visual system combines the response of three types of cone cells in the retina--a compressive process that discards a significant amount of spectral information. Here, we present an approach to enhance human color vision by breaking its inherent binocular redundancy, providing different spectral content to each eye. We fabricated a set of optical filters that "splits" the response of the short-wavelength cone between the two eyes in individuals with typical trichromatic vision, simulating the presence of approximately four distinct cone types ("tetrachromacy"). Such an increase in the number of effective cone types can reduce the prevalence of metamers--pairs of distinct spectra that resolve to the same tristimulus values. This technique may result in an enhancement of spectral perception, with applications ranging from camouflage detection and anti-counterfeiting to new types of artwork and data visualization.