Representation learning is currently a very hot topic in modern machine learning, mostly due to the great success of the deep learning methods. In particular low-dimensional representation which discriminates classes can not only enhance the classification procedure, but also make it faster, while contrary to the high-dimensional embeddings can be efficiently used for visual based exploratory data analysis. In this paper we propose Maximum Entropy Linear Manifold (MELM), a multidimensional generalization of Multithreshold Entropy Linear Classifier model which is able to find a low-dimensional linear data projection maximizing discriminativeness of projected classes. As a result we obtain a linear embedding which can be used for classification, class aware dimensionality reduction and data visualization. MELM provides highly discriminative 2D projections of the data which can be used as a method for constructing robust classifiers. We provide both empirical evaluation as well as some interesting theoretical properties of our objective function such us scale and affine transformation invariance, connections with PCA and bounding of the expected balanced accuracy error.
In this paper, we propose and study random maxout features, which are constructed by first projecting the input data onto sets of randomly generated vectors with Gaussian elements, and then outputing the maximum projection value for each set. We show that the resulting random feature map, when used in conjunction with linear models, allows for the locally linear estimation of the function of interest in classification tasks, and for the locally linear embedding of points when used for dimensionality reduction or data visualization. We derive generalization bounds for learning that assess the error in approximating locally linear functions by linear functions in the maxout feature space, and empirically evaluate the efficacy of the approach on the MNIST and TIMIT classification tasks.
T-SNE is a well-known approach to embedding high-dimensional data and has been widely used in data visualization. The basic assumption of t-SNE is that the data are non-constrained in the Euclidean space and the local proximity can be modelled by Gaussian distributions. This assumption does not hold for a wide range of data types in practical applications, for instance spherical data for which the local proximity is better modelled by the von Mises-Fisher (vMF) distribution instead of the Gaussian. This paper presents a vMF-SNE embedding algorithm to embed spherical data. An iterative process is derived to produce an efficient embedding. The results on a simulation data set demonstrated that vMF-SNE produces better embeddings than t-SNE for spherical data.
Visualizing high dimensional data by projecting them into two or three dimensional space is one of the most effective ways to intuitively understand the data's underlying characteristics, for example their class neighborhood structure. While data visualization in low dimensional space can be efficient for revealing the data's underlying characteristics, classifying a new sample in the reduced-dimensional space is not always beneficial because of the loss of information in expressing the data. It is possible to classify the data in the high dimensional space, while visualizing them in the low dimensional space, but in this case, the visualization is often meaningless because it fails to illustrate the underlying characteristics that are crucial for the classification process. In this paper, the performance-preserving property of the previously proposed Restricted Radial Basis Function Network in reducing the dimension of labeled data is explained. Here, it is argued through empirical experiments that the internal representation of the Restricted Radial Basis Function Network, which during the supervised learning process organizes a visualizable two dimensional map, does not only preserve the topographical structure of high dimensional data but also captures their class neighborhood structures that are important for classifying them. Hence, unlike many of the existing dimension reduction methods, the Restricted Radial Basis Function Network offers two dimensional visualization that is strongly correlated with the classification process.
We present ShapeNet: a richly-annotated, large-scale repository of shapes represented by 3D CAD models of objects. ShapeNet contains 3D models from a multitude of semantic categories and organizes them under the WordNet taxonomy. It is a collection of datasets providing many semantic annotations for each 3D model such as consistent rigid alignments, parts and bilateral symmetry planes, physical sizes, keywords, as well as other planned annotations. Annotations are made available through a public web-based interface to enable data visualization of object attributes, promote data-driven geometric analysis, and provide a large-scale quantitative benchmark for research in computer graphics and vision. At the time of this technical report, ShapeNet has indexed more than 3,000,000 models, 220,000 models out of which are classified into 3,135 categories (WordNet synsets). In this report we describe the ShapeNet effort as a whole, provide details for all currently available datasets, and summarize future plans.
A main goal of data visualization is to find, from among all the available alternatives, mappings to the 2D/3D display which are relevant to the user. Assuming user interaction data, or other auxiliary data about the items or their relationships, the goal is to identify which aspects in the primary data support the user\'s input and, equally importantly, which aspects of the user\'s potentially noisy input have support in the primary data. For solving the problem, we introduce a multi-view embedding in which a latent factorization identifies which aspects in the two data views (primary data and user data) are related and which are specific to only one of them. The factorization is a generative model in which the display is parameterized as a part of the factorization and the other factors explain away the aspects not expressible in a two-dimensional display. Functioning of the model is demonstrated on several data sets.
In this paper, we propose the "adversarial autoencoder" (AAE), which is a probabilistic autoencoder that uses the recently proposed generative adversarial networks (GAN) to perform variational inference by matching the aggregated posterior of the hidden code vector of the autoencoder with an arbitrary prior distribution. Matching the aggregated posterior to the prior ensures that generating from any part of prior space results in meaningful samples. As a result, the decoder of the adversarial autoencoder learns a deep generative model that maps the imposed prior to the data distribution. We show how the adversarial autoencoder can be used in applications such as semi-supervised classification, disentangling style and content of images, unsupervised clustering, dimensionality reduction and data visualization. We performed experiments on MNIST, Street View House Numbers and Toronto Face datasets and show that adversarial autoencoders achieve competitive results in generative modeling and semi-supervised classification tasks.
Explicit high-order feature interactions efficiently capture essential structural knowledge about the data of interest and have been used for constructing generative models. We present a supervised discriminative High-Order Parametric Embedding (HOPE) approach to data visualization and compression. Compared to deep embedding models with complicated deep architectures, HOPE generates more effective high-order feature mapping through an embarrassingly simple shallow model. Furthermore, two approaches to generating a small number of exemplars conveying high-order interactions to represent large-scale data sets are proposed. These exemplars in combination with the feature mapping learned by HOPE effectively capture essential data variations. Moreover, through HOPE, these exemplars are employed to increase the computational efficiency of kNN classification for fast information retrieval by thousands of times. For classification in two-dimensional embedding space on MNIST and USPS datasets, our shallow method HOPE with simple Sigmoid transformations significantly outperforms state-of-the-art supervised deep embedding models based on deep neural networks, and even achieved historically low test error rate of 0.65% in two-dimensional space on MNIST, which demonstrates the representational efficiency and power of supervised shallow models with high-order feature interactions.
We propose the topic grids to detect anomaly and analyze the behavior based on the access log content. Content-based behavioral risk is quantified in the high dimensional space where the topics are generated from the log. The topics are being projected homogeneously into a space that is perception- and interaction-friendly to the human experts.
Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization. Despite their popularity, the current SNE methods experience a crowding problem when the data include highly imbalanced similarities. This implies that the data points with higher total similarity tend to get crowded around the display center. To solve this problem, we introduce a fast normalization method and normalize the similarity matrix to be doubly stochastic such that all the data points have equal total similarities. Furthermore, we show empirically and theoretically that the doubly stochasticity constraint often leads to embeddings which are approximately spherical. This suggests replacing a flat space with spheres as the embedding space. The spherical embedding eliminates the discrepancy between the center and the periphery in visualization, which efficiently resolves the crowding problem. We compared the proposed method (DOSNES) with the state-of-the-art SNE method on three real-world datasets and the results clearly indicate that our method is more favorable in terms of visualization quality.
We propose a novel probabilistic dimensionality reduction framework that can naturally integrate the generative model and the locality information of data. Based on this framework, we present a new model, which is able to learn a smooth skeleton of embedding points in a low-dimensional space from high-dimensional noisy data. The formulation of the new model can be equivalently interpreted as two coupled learning problem, i.e., structure learning and the learning of projection matrix. This interpretation motivates the learning of the embedding points that can directly form an explicit graph structure. We develop a new method to learn the embedding points that form a spanning tree, which is further extended to obtain a discriminative and compact feature representation for clustering problems. Unlike traditional clustering methods, we assume that centers of clusters should be close to each other if they are connected in a learned graph, and other cluster centers should be distant. This can greatly facilitate data visualization and scientific discovery in downstream analysis. Extensive experiments are performed that demonstrate that the proposed framework is able to obtain discriminative feature representations, and correctly recover the intrinsic structures of various real-world datasets.
This paper presents a deep nonlinear metric learning framework for data visualization on an image dataset. We propose the Triangular Similarity and prove its equivalence to the Cosine Similarity in measuring a data pair. Based on this novel similarity, a geometrically motivated loss function - the triangular loss - is then developed for optimizing a metric learning system comprising two identical CNNs. It is shown that this deep nonlinear system can be efficiently trained by a hybrid algorithm based on the conventional backpropagation algorithm. More interestingly, benefiting from classical manifold learning theories, the proposed system offers two different views to visualize the outputs, the second of which provides better classification results than the state-of-the-art methods in the visualizable spaces.
In this paper we present a data visualization method together with its potential usefulness in digital humanities and philosophy of language. We compile a multilingual parallel corpus from different versions of Wittgenstein's Tractatus Logico-Philosophicus, including the original in German and translations into English, Spanish, French, and Russian. Using this corpus, we compute a similarity measure between propositions and render a visual network of relations for different languages.
In the context of Smart Cities, indicator definitions have been used to calculate values that enable the comparison among different cities. The calculation of an indicator values has challenges as the calculation may need to combine some aspects of quality while addressing different levels of abstraction. Knowledge graphs (KGs) have been used successfully to support flexible representation, which can support improved understanding and data analysis in similar settings. This paper presents an operational description for a city KG, an indicator ontology that support indicator discovery and data visualization and an application capable of performing metadata analysis to automatically build and display dashboards according to discovered indicators. We describe our implementation in an urban mobility setting.
t-Distributed Stochastic Neighbor Embedding (t-SNE) is one of the most widely used dimensionality reduction methods for data visualization, but it has a perplexity hyperparameter that requires manual selection. In practice, proper tuning of t-SNE perplexity requires users to understand the inner working of the method as well as to have hands-on experience. We propose a model selection objective for t-SNE perplexity that requires negligible extra computation beyond that of the t-SNE itself. We empirically validate that the perplexity settings found by our approach are consistent with preferences elicited from human experts across a number of datasets. The similarities of our approach to Bayesian information criteria (BIC) and minimum description length (MDL) are also analyzed.
With the rise of Social Media, people obtain and share information almost instantly on a 24/7 basis. Many research areas have tried to gain valuable insights from these large volumes of freely available user generated content. With the goal of extracting knowledge from social media streams that might be useful in the context of intelligent transportation systems and smart cities, we designed and developed a framework that provides functionalities for parallel collection of geo-located tweets from multiple pre-defined bounding boxes (cities or regions), including filtering of non-complying tweets, text pre-processing for Portuguese and English language, topic modeling, and transportation-specific text classifiers, as well as, aggregation and data visualization. We performed an exploratory data analysis of geo-located tweets in 5 different cities: Rio de Janeiro, S\~ao Paulo, New York City, London and Melbourne, comprising a total of more than 43 million tweets in a period of 3 months. Furthermore, we performed a large scale topic modelling comparison between Rio de Janeiro and S\~ao Paulo. Interestingly, most of the topics are shared between both cities which despite being in the same country are considered very different regarding population, economy and lifestyle. We take advantage of recent developments in word embeddings and train such representations from the collections of geo-located tweets. We then use a combination of bag-of-embeddings and traditional bag-of-words to train travel-related classifiers in both Portuguese and English to filter travel-related content from non-related. We created specific gold-standard data to perform empirical evaluation of the resulting classifiers. Results are in line with research work in other application areas by showing the robustness of using word embeddings to learn word similarities that bag-of-words is not able to capture.
Adapted from biological sequence alignment, trace alignment is a process mining technique used to visualize and analyze workflow data. Any analysis done with this method, however, is affected by the alignment quality. The best existing trace alignment techniques use progressive guide-trees to heuristically approximate the optimal alignment in O(N2L2) time. These algorithms are heavily dependent on the selected guide-tree metric, often return sum-of-pairs-score-reducing errors that interfere with interpretation, and are computationally intensive for large datasets. To alleviate these issues, we propose process-oriented iterative multiple alignment (PIMA), which contains specialized optimizations to better handle workflow data. We demonstrate that PIMA is a flexible framework capable of achieving better sum-of-pairs score than existing trace alignment algorithms in only O(NL2) time. We applied PIMA to analyzing medical workflow data, showing how iterative alignment can better represent the data and facilitate the extraction of insights from data visualization.
Social Media users tend to mention entities when reacting to news events. The main purpose of this work is to create entity-centric aggregations of tweets on a daily basis. By applying topic modeling and sentiment analysis, we create data visualization insights about current events and people reactions to those events from an entity-centric perspective.
This paper reviews the state-of-the-art of semantic change computation, one emerging research field in computational linguistics, proposing a framework that summarizes the literature by identifying and expounding five essential components in the field: diachronic corpus, diachronic word sense characterization, change modelling, evaluation data and data visualization. Despite the potential of the field, the review shows that current studies are mainly focused on testifying hypotheses proposed in theoretical linguistics and that several core issues remain to be solved: the need for diachronic corpora of languages other than English, the need for comprehensive evaluation data for evaluation, the comparison and construction of approaches to diachronic word sense characterization and change modelling, and further exploration of data visualization techniques for hypothesis justification.
Visual analytics systems combine machine learning or other analytic techniques with interactive data visualization to promote sensemaking and analytical reasoning. It is through such techniques that people can make sense of large, complex data. While progress has been made, the tactful combination of machine learning and data visualization is still under-explored. This state-of-the-art report presents a summary of the progress that has been made by highlighting and synthesizing select research advances. Further, it presents opportunities and challenges to enhance the synergy between machine learning and visual analytics for impactful future research directions.