Correctly recognizing the behaviors of children with Autism Spectrum Disorder (ASD) is of vital importance for the diagnosis of Autism and timely early intervention. However, the observation and recording during the treatment from the parents of autistic children may not be accurate and objective. In such cases, automatic recognition systems based on computer vision and machine learning (in particular deep learning) technology can alleviate this issue to a large extent. Existing human action recognition models can now achieve persuasive performance on challenging activity datasets, e.g. daily activity, and sports activity. However, problem behaviors in children with ASD are very different from these general activities, and recognizing these problem behaviors via computer vision is less studied. In this paper, we first evaluate a strong baseline for action recognition, i.e. Video Swin Transformer, on two autism behaviors datasets (SSBD and ESBD) and show that it can achieve high accuracy and outperform the previous methods by a large margin, demonstrating the feasibility of vision-based problem behaviors recognition. Moreover, we propose language-assisted training to further enhance the action recognition performance. Specifically, we develop a two-branch multimodal deep learning framework by incorporating the "freely available" language description for each type of problem behavior. Experimental results demonstrate that incorporating additional language supervision can bring an obvious performance boost for the autism problem behaviors recognition task as compared to using the video information only (i.e. 3.49% improvement on ESBD and 1.46% on SSBD).
We present DLKoopman -- a software package for Koopman theory that uses deep learning to learn an encoding of a nonlinear dynamical system into a linear space, while simultaneously learning the linear dynamics. While several previous efforts have either restricted the ability to learn encodings, or been bespoke efforts designed for specific systems, DLKoopman is a generalized tool that can be applied to data-driven learning and optimization of any dynamical system. It can either be trained on data from individual states (snapshots) of a system and used to predict its unknown states, or trained on data from trajectories of a system and used to predict unknown trajectories for new initial states. DLKoopman is available on the Python Package Index (PyPI) as 'dlkoopman', and includes extensive documentation and tutorials. Additional contributions of the package include a novel metric called Average Normalized Absolute Error for evaluating performance, and a ready-to-use hyperparameter search module for improving performance.
From AlexNet to Inception, autoencoders to diffusion models, the development of novel and powerful deep learning models and learning algorithms has proceeded at breakneck speeds. In part, we believe that rapid iteration of model architecture and learning techniques by a large community of researchers over a common representation of the underlying entities has resulted in transferable deep learning knowledge. As a result, model scale, accuracy, fidelity, and compute performance have dramatically increased in computer vision and natural language processing. On the other hand, the lack of a common representation for chemical structure has hampered similar progress. To enable transferable deep learning, we identify the need for a robust 3-dimensional representation of materials such as molecules and crystals. The goal is to enable both materials property prediction and materials generation with 3D structures. While computationally costly, such representations can model a large set of chemical structures. We propose $\textit{ParticleGrid}$, a SIMD-optimized library for 3D structures, that is designed for deep learning applications and to seamlessly integrate with deep learning frameworks. Our highly optimized grid generation allows for generating grids on the fly on the CPU, reducing storage and GPU compute and memory requirements. We show the efficacy of 3D grids generated via $\textit{ParticleGrid}$ and accurately predict molecular energy properties using a 3D convolutional neural network. Our model is able to get 0.006 mean square error and nearly match the values calculated using computationally costly density functional theory at a fraction of the time.
Tables are everywhere, from scientific journals, papers, websites, and newspapers all the way to items we buy at the supermarket. Detecting them is thus of utmost importance to automatically understanding the content of a document. The performance of table detection has substantially increased thanks to the rapid development of deep learning networks. The goals of this survey are to provide a profound comprehension of the major developments in the field of Table Detection, offer insight into the different methodologies, and provide a systematic taxonomy of the different approaches. Furthermore, we provide an analysis of both classic and new applications in the field. Lastly, the datasets and source code of the existing models are organized to provide the reader with a compass on this vast literature. Finally, we go over the architecture of utilizing various object detection and table structure recognition methods to create an effective and efficient system, as well as a set of development trends to keep up with state-of-the-art algorithms and future research. We have also set up a public GitHub repository where we will be updating the most recent publications, open data, and source code. The GitHub repository is available at https://github.com/abdoelsayed2016/table-detection-structure-recognition.
Text generation tasks have gotten the attention of researchers in the last few years because of their applications on a large scale.In the past, many researchers focused on task-based text generations.Our research focuses on text generation based on the ideology and style of a specific author, and text generation on a topic that was not written by the same author in the past.Our trained model requires an input prompt containing initial few words of text to produce a few paragraphs of text based on the ideology and style of the author on which the model is trained.Our methodology to accomplish this task is based on Bi-LSTM.The Bi-LSTM model is used to make predictions at the character level, during the training corpus of a specific author is used along with the ground truth corpus.A pre-trained model is used to identify the sentences of ground truth having contradiction with the author's corpus to make our language model inclined.During training, we have achieved a perplexity score of 2.23 at the character level. The experiments show a perplexity score of around 3 over the test dataset.
We present MargNet, a deep learning-based classifier for identifying stars, quasars and compact galaxies using photometric parameters and images from the Sloan Digital Sky Survey (SDSS) Data Release 16 (DR16) catalogue. MargNet consists of a combination of Convolutional Neural Network (CNN) and Artificial Neural Network (ANN) architectures. Using a carefully curated dataset consisting of 240,000 compact objects and an additional 150,000 faint objects, the machine learns classification directly from the data, minimising the need for human intervention. MargNet is the first classifier focusing exclusively on compact galaxies and performs better than other methods to classify compact galaxies from stars and quasars, even at fainter magnitudes. This model and feature engineering in such deep learning architectures will provide greater success in identifying objects in the ongoing and upcoming surveys, such as Dark Energy Survey (DES) and images from the Vera C. Rubin Observatory.
Detecting and classifying diseases using X-ray images is one of the more challenging core tasks in the medical and research world. Due to the recent high interest in radiological images and AI, early detection of diseases in X-ray images has become notably more essential to prevent further spreading and flatten the curve. Innovations and revolutions of Computer Vision with Deep learning methods offer great promise for fast and accurate diagnosis of screening and detection from chest X-ray images (CXR). This work presents rapid detection of diseases in the lung using the efficient Deep learning pre-trained RepVGG algorithm for deep feature extraction and classification. We used X-ray images as an example to show the model's efficiency. To perform this task, we classify X-Ray images into Covid-19, Pneumonia, and Normal X-Ray images. Employ ROI object to improve the detection accuracy for lung extraction, followed by data pre-processing and augmentation. We are applying Artificial Intelligence technology for automatic highlighted detection of affected areas of people's lungs. Based on the X-Ray images, an algorithm was developed that classifies X-Ray images with height accuracy and power faster thanks to the architecture transformation of the model. We compared deep learning frameworks' accuracy and detection of disease. The study shows the high power of deep learning methods for X-ray images based on COVID-19 detection utilizing chest X-rays. The proposed framework offers better diagnostic accuracy by comparing popular deep learning models, i.e., VGG, ResNet50, inceptionV3, DenseNet, and InceptionResnetV2.
The last decade's research in artificial intelligence had a significant impact on the advance of autonomous driving. Yet, safety remains a major concern when it comes to deploying such systems in high-risk environments. The objective of this thesis is to develop methodological tools which provide reliable uncertainty estimates for deep neural networks. First, we introduce a new criterion to reliably estimate model confidence: the true class probability (TCP). We show that TCP offers better properties for failure prediction than current uncertainty measures. Since the true class is by essence unknown at test time, we propose to learn TCP criterion from data with an auxiliary model, introducing a specific learning scheme adapted to this context. The relevance of the proposed approach is validated on image classification and semantic segmentation datasets. Then, we extend our learned confidence approach to the task of domain adaptation where it improves the selection of pseudo-labels in self-training methods. Finally, we tackle the challenge of jointly detecting misclassification and out-of-distributions samples by introducing a new uncertainty measure based on evidential models and defined on the simplex.
Recent years have witnessed the great success of deep learning algorithms in the geoscience and remote sensing realm. Nevertheless, the security and robustness of deep learning models deserve special attention when addressing safety-critical remote sensing tasks. In this paper, we provide a systematic analysis of backdoor attacks for remote sensing data, where both scene classification and semantic segmentation tasks are considered. While most of the existing backdoor attack algorithms rely on visible triggers like squared patches with well-designed patterns, we propose a novel wavelet transform-based attack (WABA) method, which can achieve invisible attacks by injecting the trigger image into the poisoned image in the low-frequency domain. In this way, the high-frequency information in the trigger image can be filtered out in the attack, resulting in stealthy data poisoning. Despite its simplicity, the proposed method can significantly cheat the current state-of-the-art deep learning models with a high attack success rate. We further analyze how different trigger images and the hyper-parameters in the wavelet transform would influence the performance of the proposed method. Extensive experiments on four benchmark remote sensing datasets demonstrate the effectiveness of the proposed method for both scene classification and semantic segmentation tasks and thus highlight the importance of designing advanced backdoor defense algorithms to address this threat in remote sensing scenarios. The code will be available online at \url{https://github.com/ndraeger/waba}.
We present CardiacGen, a Deep Learning framework for generating synthetic but physiologically plausible cardiac signals like ECG. Based on the physiology of cardiovascular system function, we propose a modular hierarchical generative model and impose explicit regularizing constraints for training each module using multi-objective loss functions. The model comprises 2 modules, an HRV module focused on producing realistic Heart-Rate-Variability characteristics and a Morphology module focused on generating realistic signal morphologies for different modalities. We empirically show that in addition to having realistic physiological features, the synthetic data from CardiacGen can be used for data augmentation to improve the performance of Deep Learning based classifiers. CardiacGen code is available at https://github.com/SENSE-Lab-OSU/cardiac_gen_model.
The past decade has witnessed the advances of artificial intelligence with various applications in engineering. Recently, artificial neural network empowered inverse design for metasurfaces has been developed that can design on-demand meta-atoms with diverse shapes and high performance, where the design process based on artificial intelligence is fast and automatic. However, once the inverse-designed static meta-atom is fabricated, the function of the metasurface is fixed. Reconfigurable metasurfaces can realize dynamic functions, while applying artificial intelligence to design practical reconfigurable meta-atoms inversely has not been reported yet. Here, we present a deep-learning-empowered inverse design method for freeform reconfigurable metasurfaces, which can generate on-demand reconfigurable coding meta-atoms at self-defined frequency bands. To reduce the scale of dataset, a decoupling method of the reconfigurable meta-atom based on microwave network theory is proposed at first, which can convert the inverse design process for reconfigurable coding meta-atoms to the inverse design for static structures. A convolutional neural network model is trained to predict the responses of free-shaped meta-atoms, and the genetic algorithm is applied to generate the optimal structure patterns rapidly. As a demonstration of concept, several inverse-designed examples are generated with different self-defined spectrum responses in microwave band, and an inverse-designed wideband reconfigurable metasurface prototype is fabricated and measured for beam scanning applications with broad bandwidth. Our work paves the way for the fast and automatic design process of high-performance reconfigurable metasurfaces.
As mobile cameras with compact optics are unable to produce a strong bokeh effect, lots of interest is now devoted to deep learning-based solutions for this task. In this Mobile AI challenge, the target was to develop an efficient end-to-end AI-based bokeh effect rendering approach that can run on modern smartphone GPUs using TensorFlow Lite. The participants were provided with a large-scale EBB! bokeh dataset consisting of 5K shallow / wide depth-of-field image pairs captured using the Canon 7D DSLR camera. The runtime of the resulting models was evaluated on the Kirin 9000's Mali GPU that provides excellent acceleration results for the majority of common deep learning ops. A detailed description of all models developed in this challenge is provided in this paper.
Double-blind peer review is considered a pillar of academic research because it is perceived to ensure a fair, unbiased, and fact-centered scientific discussion. Yet, experienced researchers can often correctly guess from which research group an anonymous submission originates, biasing the peer-review process. In this work, we present a transformer-based, neural-network architecture that only uses the text content and the author names in the bibliography to attribute an anonymous manuscript to an author. To train and evaluate our method, we created the largest authorship identification dataset to date. It leverages all research papers publicly available on arXiv amounting to over 2 million manuscripts. In arXiv-subsets with up to 2,000 different authors, our method achieves an unprecedented authorship attribution accuracy, where up to 73% of papers are attributed correctly. We present a scaling analysis to highlight the applicability of the proposed method to even larger datasets when sufficient compute capabilities are more widely available to the academic community. Furthermore, we analyze the attribution accuracy in settings where the goal is to identify all authors of an anonymous manuscript. Thanks to our method, we are not only able to predict the author of an anonymous work, but we also provide empirical evidence of the key aspects that make a paper attributable. We have open-sourced the necessary tools to reproduce our experiments.
Machine Learning has become the bedrock of recent advances in text, image, video, and audio processing and generation. Most production systems deal with several models during deployment and training, each with a variety of tuned hyperparameters. Furthermore, data collection and processing aspects of ML pipelines are receiving increasing interest due to their importance in creating sustainable high-quality classifiers. We present EdnaML, a framework with a declarative API for reproducible deep learning. EdnaML provides low-level building blocks that can be composed manually, as well as a high-level pipeline orchestration API to automate data collection, data processing, classifier training, classifier deployment, and model monitoring. Our layered API allows users to manage ML pipelines at high-level component abstractions, while providing flexibility to modify any part of it through the building blocks. We present several examples of ML pipelines with EdnaML, including a large-scale fake news labeling and classification system with six sub-pipelines managed by EdnaML.
Histological staining is the gold standard for tissue examination in clinical pathology and life-science research, which visualizes the tissue and cellular structures using chromatic dyes or fluorescence labels to aid the microscopic assessment of tissue. However, the current histological staining workflow requires tedious sample preparation steps, specialized laboratory infrastructure, and trained histotechnologists, making it expensive, time-consuming, and not accessible in resource-limited settings. Deep learning techniques created new opportunities to revolutionize staining methods by digitally generating histological stains using trained neural networks, providing rapid, cost-effective, and accurate alternatives to standard chemical staining methods. These techniques, broadly referred to as virtual staining, were extensively explored by multiple research groups and demonstrated to be successful in generating various types of histological stains from label-free microscopic images of unstained samples; similar approaches were also used for transforming images of an already stained tissue sample into another type of stain, performing virtual stain-to-stain transformations. In this Review, we provide a comprehensive overview of the recent research advances in deep learning-enabled virtual histological staining techniques. The basic concepts and the typical workflow of virtual staining are introduced, followed by a discussion of representative works and their technical innovations. We also share our perspectives on the future of this emerging field, aiming to inspire readers from diverse scientific fields to further expand the scope of deep learning-enabled virtual histological staining techniques and their applications.
While neural networks-based photo processing solutions can provide a better image quality compared to the traditional ISP systems, their application to mobile devices is still very limited due to their very high computational complexity. In this paper, we present a novel MicroISP model designed specifically for edge devices, taking into account their computational and memory limitations. The proposed solution is capable of processing up to 32MP photos on recent smartphones using the standard mobile ML libraries and requiring less than 1 second to perform the inference, while for FullHD images it achieves real-time performance. The architecture of the model is flexible, allowing to adjust its complexity to devices of different computational power. To evaluate the performance of the model, we collected a novel Fujifilm UltraISP dataset consisting of thousands of paired photos captured with a normal mobile camera sensor and a professional 102MP medium-format FujiFilm GFX100 camera. The experiments demonstrated that, despite its compact size, the MicroISP model is able to provide comparable or better visual results than the traditional mobile ISP systems, while outperforming the previously proposed efficient deep learning based solutions. Finally, this model is also compatible with the latest mobile AI accelerators, achieving good runtime and low power consumption on smartphone NPUs and APUs. The code, dataset and pre-trained models are available on the project website: https://people.ee.ethz.ch/~ihnatova/microisp.html
Vision Transformer (ViT) is a pioneering deep learning framework that can address real-world computer vision issues, such as image classification and object recognition. Importantly, ViTs are proven to outperform traditional deep learning models, such as convolutional neural networks (CNNs). Relatively recently, a number of ViT mutations have been transplanted into the field of medical imaging, thereby resolving a variety of critical classification and segmentation challenges, especially in terms of brain imaging data. In this work, we provide a novel multimodal deep learning pipeline, MultiCrossViT, which is capable of analyzing both structural MRI (sMRI) and static functional network connectivity (sFNC) data for the prediction of schizophrenia disease. On a dataset with minimal training subjects, our novel model can achieve an AUC of 0.832. Finally, we visualize multiple brain regions and covariance patterns most relevant to schizophrenia based on the resulting ViT attention maps by extracting features from transformer encoders.
Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology.
Machine learning has been widely used in healthcare applications to approximate complex models, for clinical diagnosis, prognosis, and treatment. As deep learning has the outstanding ability to extract information from time series, its true capabilities on sparse, irregularly sampled, multivariate, and imbalanced physiological data are not yet fully explored. In this paper, we systematically examine the performance of machine learning models for the clinical prediction task based on the EHR, especially physiological time series. We choose Physionet 2019 challenge public dataset to predict Sepsis outcomes in ICU units. Ten baseline machine learning models are compared, including 3 deep learning methods and 7 non-deep learning methods, commonly used in the clinical prediction domain. Nine evaluation metrics with specific clinical implications are used to assess the performance of models. Besides, we sub-sample training dataset sizes and use learning curve fit to investigate the impact of the training dataset size on the performance of the machine learning models. We also propose the general pre-processing method for the physiology time-series data and use Dice Loss to deal with the dataset imbalanced problem. The results show that deep learning indeed outperforms non-deep learning, but with certain conditions: firstly, evaluating with some particular evaluation metrics (AUROC, AUPRC, Sensitivity, and FNR), but not others; secondly, the training dataset size is large enough (with an estimation of a magnitude of thousands).
Sentiment analysis is the computational study of opinions and emotions ex-pressed in text. Deep learning is a model that is currently producing state-of-the-art in various application domains, including sentiment analysis. Many researchers are using a hybrid approach that combines different deep learning models and has been shown to improve model performance. In sentiment analysis, input in text data is first converted into a numerical representation. The standard method used to obtain a text representation is the fine-tuned embedding method. However, this method does not pay attention to each word's context in the sentence. Therefore, the Bidirectional Encoder Representation from Transformer (BERT) model is used to obtain text representations based on the context and position of words in sentences. This research extends the previous hybrid deep learning using BERT representation for Indonesian sentiment analysis. Our simulation shows that the BERT representation improves the accuracies of all hybrid architectures. The BERT-based LSTM-CNN also reaches slightly better accuracies than other BERT-based hybrid architectures.