Deep learning has been shown to be useful to detect breast cancer metastases by analyzing whole slide images of sentinel lymph nodes. However, it requires extensive scanning and analysis of all the lymph nodes slides for each case. Our deep learning study focuses on breast cancer screening with only a small set of image patches from any sentinel lymph node, positive or negative for metastasis, to detect changes in tumor environment and not in the tumor itself. We design a convolutional neural network in the Python language to build a diagnostic model for this purpose. The excellent results from this preliminary study provided a proof of concept for incorporating automated metastatic screen into the digital pathology workflow to augment the pathologists' productivity. Our approach is unique since it provides a very rapid screen rather than an exhaustive search for tumor in all fields of all sentinel lymph nodes.
Automatic lesion analysis is critical in skin cancer diagnosis and ensures effective treatment. The computer aided diagnosis of such skin cancer in dermoscopic images can significantly reduce the clinicians workload and help improve diagnostic accuracy. Although researchers are working extensively to address this problem, early detection and accurate identification of skin lesions remain challenging. This research focuses on a two step framework for skin lesion segmentation followed by classification for lesion analysis. We explored the effectiveness of deep convolutional neural network based architectures by designing an encoder-decoder architecture for skin lesion segmentation and CNN based classification network. The proposed approaches are evaluated quantitatively in terms of the Accuracy, mean Intersection over Union and Dice Similarity Coefficient. Our cascaded end to end deep learning based approach is the first of its kind, where the classification accuracy of the lesion is significantly improved because of prior segmentation.
As autonomous systems increasingly rely on Deep Neural Networks (DNN) to implement the navigation pipeline functions, uncertainty estimation methods have become paramount for estimating confidence in DNN predictions. Bayesian Deep Learning (BDL) offers a principled approach to model uncertainties in DNNs. However, in DNN-based systems, not all the components use uncertainty estimation methods and typically ignore the uncertainty propagation between them. This paper provides a method that considers the uncertainty and the interaction between BDL components to capture the overall system uncertainty. We study the effect of uncertainty propagation in a BDL-based system for autonomous aerial navigation. Experiments show that our approach allows us to capture useful uncertainty estimates while slightly improving the system's performance in its final task. In addition, we discuss the benefits, challenges, and implications of adopting BDL to build dependable autonomous systems.
Large Language Models (LLMs) have been making big waves in the machine learning community within the past few years. The impressive scalability of LLMs due to the advent of deep learning can be seen as a continuation of empiricist lingusitic methods, as opposed to rule-based linguistic methods that are grounded in a nativist perspective. Current LLMs are generally inaccessible to resource-constrained researchers, due to a variety of factors including closed source code. This work argues that this lack of accessibility could instill a nativist bias in researchers new to computational linguistics, given that new researchers may only have rule-based, nativist approaches to study to produce new work. Also, given that there are numerous critics of deep learning claiming that LLMs and related methods may soon lose their relevancy, we speculate that such an event could trigger a new wave of nativism in the language processing community. To prevent such a dramatic shift and placing favor in hybrid methods of rules and deep learning, we call upon researchers to open source their LLM code wherever possible to allow both empircist and hybrid approaches to remain accessible.
In recent years, deep learning revolutionized machine learning and its applications, producing results comparable to human experts in several domains, including neuroscience. Each year, hundreds of scientific publications present applications of deep neural networks for biomedical data analysis. Due to the fast growth of the domain, it could be a complicated and extremely time-consuming task for worldwide researchers to have a clear perspective of the most recent and advanced software libraries. This work contributes to clarify the current situation in the domain, outlining the most useful libraries that implement and facilitate deep learning application to neuroscience, allowing scientists to identify the most suitable options for their research or clinical projects. This paper summarizes the main developments in Deep Learning and their relevance to Neuroscience; it then reviews neuroinformatic toolboxes and libraries, collected from the literature and from specific hubs of software projects oriented to neuroscience research. The selected tools are presented in tables detailing key features grouped by domain of application (e.g. data type, neuroscience area, task), model engineering (e.g. programming language, model customization) and technological aspect (e.g. interface, code source). The results show that, among a high number of available software tools, several libraries are standing out in terms of functionalities for neuroscience applications. The aggregation and discussion of this information can help the neuroscience community to devolop their research projects more efficiently and quickly, both by means of readily available tools, and by knowing which modules may be improved, connected or added.
This book is the result of a seminar in which we reviewed multimodal approaches and attempted to create a solid overview of the field, starting with the current state-of-the-art approaches in the two subfields of Deep Learning individually. Further, modeling frameworks are discussed where one modality is transformed into the other, as well as models in which one modality is utilized to enhance representation learning for the other. To conclude the second part, architectures with a focus on handling both modalities simultaneously are introduced. Finally, we also cover other modalities as well as general-purpose multi-modal models, which are able to handle different tasks on different modalities within one unified architecture. One interesting application (Generative Art) eventually caps off this booklet.
The undesired interaction of a quantum system with its environment generally leads to a coherence decay of superposition states in time. A precise knowledge of the spectral content of the noise induced by the environment is crucial to protect qubit coherence and optimize its employment in quantum device applications. We experimentally show that the use of neural networks can highly increase the accuracy of noise spectroscopy, by reconstructing the power spectral density that characterizes an ensemble of carbon impurities around a nitrogen-vacancy (NV) center in diamond. Neural networks are trained over spin coherence functions of the NV center subjected to different Carr-Purcell sequences, typically used for dynamical decoupling (DD). As a result, we determine that deep learning models can be more accurate than standard DD noise-spectroscopy techniques, by requiring at the same time a much smaller number of DD sequences.
Sample weighting is widely used in deep learning. A large number of weighting methods essentially utilize the learning difficulty of training samples to calculate their weights. In this study, this scheme is called difficulty-based weighting. Two important issues arise when explaining this scheme. First, a unified difficulty measure that can be theoretically guaranteed for training samples does not exist. The learning difficulties of the samples are determined by multiple factors including noise level, imbalance degree, margin, and uncertainty. Nevertheless, existing measures only consider a single factor or in part, but not in their entirety. Second, a comprehensive theoretical explanation is lacking with respect to demonstrating why difficulty-based weighting schemes are effective in deep learning. In this study, we theoretically prove that the generalization error of a sample can be used as a universal difficulty measure. Furthermore, we provide formal theoretical justifications on the role of difficulty-based weighting for deep learning, consequently revealing its positive influences on both the optimization dynamics and generalization performance of deep models, which is instructive to existing weighting schemes.
Finite element methods (FEM) are popular approaches for simulation of soft tissues with elastic or viscoelastic behavior. However, their usage in real-time applications, such as in virtual reality surgical training, is limited by computational cost. In this application scenario, which typically involves transportable simulators, the computing hardware severely constrains the size or the level of details of the simulated scene. To address this limitation, data-driven approaches have been suggested to simulate mechanical deformations by learning the mapping rules from FEM generated datasets. Herein, we propose a deep learning method for predicting displacement fields of soft tissues with viscoelastic properties. The main contribution of this work is the use of a physics-guided loss function for the optimization of the deep learning model parameters. The proposed deep learning model is based on convolutional (CNN) and recurrent layers (LSTM) to predict spatiotemporal variations. It is augmented with a mass conservation law in the lost function to prevent the generation of physically inconsistent results. The deep learning model is trained on a set of FEM datasets that are generated from a commercially available state-of-the-art numerical neurosurgery simulator. The use of the physics-guided loss function in a deep learning model has led to a better generalization in the prediction of deformations in unseen simulation cases. Moreover, the proposed method achieves a better accuracy over the conventional CNN models, where improvements were observed in unseen tissue from 8% to 30% depending on the magnitude of external forces. It is hoped that the present investigation will help in filling the gap in applying deep learning in virtual reality simulators, hence improving their computational performance (compared to FEM simulations) and ultimately their usefulness.
During the last decades, many studies have been dedicated to improving the performance of neural networks, for example, the network architectures, initialization, and activation. However, investigating the importance and effects of learnable padding methods in deep learning remains relatively open. To mitigate the gap, this paper proposes a novel trainable Padding Module that can be placed in a deep learning model. The Padding Module can optimize itself without requiring or influencing the model's entire loss function. To train itself, the Padding Module constructs a ground truth and a predictor from the inputs by leveraging the underlying structure in the input data for supervision. As a result, the Padding Module can learn automatically to pad pixels to the border of its input images or feature maps. The padding contents are realistic extensions to its input data and simultaneously facilitate the deep learning model's downstream task. Experiments have shown that the proposed Padding Module outperforms the state-of-the-art competitors and the baseline methods. For example, the Padding Module has 1.23% and 0.44% more classification accuracy than the zero padding when tested on the VGG16 and ResNet50.
This paper studies the notion of age in task-oriented communications that aims to execute a task at a receiver utilizing the data at its transmitter. The transmitter-receiver operations are modeled as an encoder-decoder pair that is jointly trained while considering channel effects. The encoder converts data samples into feature vectors of small dimension and transmits them with a small number of channel uses thereby reducing the number of transmissions and latency. Instead of reconstructing input samples, the decoder performs a task, e.g., classification, on the received signals. Applying different deep neural networks of encoder-decoder pairs on MNIST and CIFAR-10 image datasets, the classifier accuracy is shown to increase with the number of channel uses at the expense of longer service time. The peak age of task information (PAoTI) is introduced to analyze this accuracy-latency tradeoff when the age grows unless a received signal is classified correctly. By incorporating channel and traffic effects, design guidelines are obtained for task-oriented communications by characterizing how the PAoTI first decreases and then increases with the number of channel uses. A dynamic update mechanism is presented to adapt the number of channel uses to channel and traffic conditions, and reduce the PAoTI in task-oriented communications.
With the rise of internet technology amidst increasing rates of urbanization, sharing information has never been easier thanks to globally-adopted platforms for digital communication. The resulting output of massive amounts of user-generated data can be used to enhance our understanding of significant societal issues particularly for urbanizing areas. In order to better analyze protest behavior, we enhanced the GSR dataset and manually labeled all the images. We used deep learning techniques to analyze social media data to detect social unrest through image classification, which performed good in predict multi-attributes, then also used map visualization to display protest behaviors across the country.
Quantitative investment (``quant'') is an interdisciplinary field combining financial engineering, computer science, mathematics, statistics, etc. Quant has become one of the mainstream investment methodologies over the past decades, and has experienced three generations: Quant 1.0, trading by mathematical modeling to discover mis-priced assets in markets; Quant 2.0, shifting quant research pipeline from small ``strategy workshops'' to large ``alpha factories''; Quant 3.0, applying deep learning techniques to discover complex nonlinear pricing rules. Despite its advantage in prediction, deep learning relies on extremely large data volume and labor-intensive tuning of ``black-box'' neural network models. To address these limitations, in this paper, we introduce Quant 4.0 and provide an engineering perspective for next-generation quant. Quant 4.0 has three key differentiating components. First, automated AI changes quant pipeline from traditional hand-craft modeling to the state-of-the-art automated modeling, practicing the philosophy of ``algorithm produces algorithm, model builds model, and eventually AI creates AI''. Second, explainable AI develops new techniques to better understand and interpret investment decisions made by machine learning black-boxes, and explains complicated and hidden risk exposures. Third, knowledge-driven AI is a supplement to data-driven AI such as deep learning and it incorporates prior knowledge into modeling to improve investment decision, in particular for quantitative value investing. Moreover, we discuss how to build a system that practices the Quant 4.0 concept. Finally, we propose ten challenging research problems for quant technology, and discuss potential solutions, research directions, and future trends.
In this work, we propose a deep learning-based method to perform semiparametric regression analysis for spatially dependent data. To be specific, we use a sparsely connected deep neural network with rectified linear unit (ReLU) activation function to estimate the unknown regression function that describes the relationship between response and covariates in the presence of spatial dependence. Under some mild conditions, the estimator is proven to be consistent, and the rate of convergence is determined by three factors: (1) the architecture of neural network class, (2) the smoothness and (intrinsic) dimension of true mean function, and (3) the magnitude of spatial dependence. Our method can handle well large data set owing to the stochastic gradient descent optimization algorithm. Simulation studies on synthetic data are conducted to assess the finite sample performance, the results of which indicate that the proposed method is capable of picking up the intricate relationship between response and covariates. Finally, a real data analysis is provided to demonstrate the validity and effectiveness of the proposed method.
This paper introduces a new method based on Deep Galerkin Methods (DGMs) for solving high-dimensional stochastic Mean Field Games (MFGs). We achieve this by using two neural networks to approximate the unknown solutions of the MFG system and forward-backward conditions. Our method is efficient, even with a small number of iterations, and is capable of handling up to 300 dimensions with a single layer, which makes it faster than other approaches. In contrast, methods based on Generative Adversarial Networks (GANs) cannot solve MFGs with non-separable Hamiltonians. We demonstrate the effectiveness of our approach by applying it to a traffic flow problem, which was previously solved using the Newton iteration method only in the deterministic case. We compare the results of our method to analytical solutions and previous approaches, showing its efficiency. We also prove the convergence of our neural network approximation with a single hidden layer using the universal approximation theorem.
Deep learning (DL) has transformed applications in a variety of domains, including computer vision, natural language processing, and tabular data analysis. The search for improved DL model accuracy has led practitioners to explore increasingly large neural architectures, with some recent Transformer models spanning hundreds of billions of learnable parameters. These designs have introduced new scale-driven systems challenges for the DL space, such as memory bottlenecks, poor runtime efficiency, and high costs of model development. Efforts to address these issues have explored techniques such as parallelization of neural architectures, spilling data across the memory hierarchy, and memory-efficient data representations. This survey will explore the large-model training systems landscape, highlighting key challenges and the various techniques that have been used to address them.
Computational reconstruction plays a vital role in computer vision and computational photography. Most of the conventional optimization and deep learning techniques explore local information for reconstruction. Recently, nonlocal low-rank (NLR) reconstruction has achieved remarkable success in improving accuracy and generalization. However, the computational cost has inhibited NLR from seeking global structural similarity, which consequentially keeps it trapped in the tradeoff between accuracy and efficiency and prevents it from high-dimensional large-scale tasks. To address this challenge, we report here the global low-rank (GLR) optimization technique, realizing highly-efficient large-scale reconstruction with global self-similarity. Inspired by the self-attention mechanism in deep learning, GLR extracts exemplar image patches by feature detection instead of conventional uniform selection. This directly produces key patches using structural features to avoid burdensome computational redundancy. Further, it performs patch matching across the entire image via neural-based convolution, which produces the global similarity heat map in parallel, rather than conventional sequential block-wise matching. As such, GLR improves patch grouping efficiency by more than one order of magnitude. We experimentally demonstrate GLR's effectiveness on temporal, frequency, and spectral dimensions, including different computational imaging modalities of compressive temporal imaging, magnetic resonance imaging, and multispectral filter array demosaicing. This work presents the superiority of inherent fusion of deep learning strategies and iterative optimization, and breaks the persistent dilemma of the tradeoff between accuracy and efficiency for various large-scale reconstruction tasks.
Motion artifact reduction is one of the important research topics in MR imaging, as the motion artifact degrades image quality and makes diagnosis difficult. Recently, many deep learning approaches have been studied for motion artifact reduction. Unfortunately, most existing models are trained in a supervised manner, requiring paired motion-corrupted and motion-free images, or are based on a strict motion-corruption model, which limits their use for real-world situations. To address this issue, here we present an annealed score-based diffusion model for MRI motion artifact reduction. Specifically, we train a score-based model using only motion-free images, and then motion artifacts are removed by applying forward and reverse diffusion processes repeatedly to gradually impose a low-frequency data consistency. Experimental results verify that the proposed method successfully reduces both simulated and in vivo motion artifacts, outperforming the state-of-the-art deep learning methods.
The emerging drone aerial survey has the advantages of low cost, high efficiency, and flexible use. However, UAVs are often equipped with cheap POS systems and non-measurement cameras, and their flight attitudes are easily affected. How to realize the large-scale mapping of UAV image-free control supported by POS faces many technical problems. The most basic and important core technology is how to accurately realize the absolute orientation of images through advanced aerial triangulation technology. In traditional aerial triangulation, image matching algorithms are constrained to varying degrees by preset prior knowledge. In recent years, deep learning has developed rapidly in the field of photogrammetric computer vision. It has surpassed the performance of traditional handcrafted features in many aspects. It has shown stronger stability in image-based navigation and positioning tasks, especially it has better resistance to unfavorable factors such as blur, illumination changes, and geometric distortion. Based on the introduction of the key technologies of aerial triangulation without image control points, this paper proposes a new drone image registration method based on deep learning image features to solve the problem of high mismatch rate in traditional methods. It adopts SuperPoint as the feature detector, uses the superior generalization performance of CNN to extract precise feature points from the UAV image, thereby achieving high-precision aerial triangulation. Experimental results show that under the same pre-processing and post-processing conditions, compared with the traditional method based on the SIFT algorithm, this method achieves suitable precision more efficiently, which can meet the requirements of UAV aerial triangulation without image control points in large-scale surveys.
Through the generalization of deep learning, the research community has addressed critical challenges in the network security domain, like malware identification and anomaly detection. However, they have yet to discuss deploying them on Internet of Things (IoT) devices for day-to-day operations. IoT devices are often limited in memory and processing power, rendering the compute-intensive deep learning environment unusable. This research proposes a way to overcome this barrier by bypassing feature engineering in the deep learning pipeline and using raw packet data as input. We introduce a feature engineering-less machine learning (ML) process to perform malware detection on IoT devices. Our proposed model, "Feature engineering-less-ML (FEL-ML)," is a lighter-weight detection algorithm that expends no extra computations on "engineered" features. It effectively accelerates the low-powered IoT edge. It is trained on unprocessed byte-streams of packets. Aside from providing better results, it is quicker than traditional feature-based methods. FEL-ML facilitates resource-sensitive network traffic security with the added benefit of eliminating the significant investment by subject matter experts in feature engineering.