Continual relation extraction (CRE) aims to solve the problem of catastrophic forgetting when learning a sequence of newly emerging relations. Recent CRE studies have found that catastrophic forgetting arises from the model's lack of robustness against future analogous relations. To address the issue, we introduce rationale, i.e., the explanations of relation classification results generated by large language models (LLM), into CRE task. Specifically, we design the multi-task rationale tuning strategy to help the model learn current relations robustly. We also conduct contrastive rationale replay to further distinguish analogous relations. Experimental results on two standard benchmarks demonstrate that our method outperforms the state-of-the-art CRE models.
Multimodal information extraction is attracting research attention nowadays, which requires aggregating representations from different modalities. In this paper, we present the Intra- and Inter-Sample Relationship Modeling (I2SRM) method for this task, which contains two modules. Firstly, the intra-sample relationship modeling module operates on a single sample and aims to learn effective representations. Embeddings from textual and visual modalities are shifted to bridge the modality gap caused by distinct pre-trained language and image models. Secondly, the inter-sample relationship modeling module considers relationships among multiple samples and focuses on capturing the interactions. An AttnMixup strategy is proposed, which not only enables collaboration among samples but also augments data to improve generalization. We conduct extensive experiments on the multimodal named entity recognition datasets Twitter-2015 and Twitter-2017, and the multimodal relation extraction dataset MNRE. Our proposed method I2SRM achieves competitive results, 77.12% F1-score on Twitter-2015, 88.40% F1-score on Twitter-2017, and 84.12% F1-score on MNRE.
Objective To develop soft prompt-based learning algorithms for large language models (LLMs), examine the shape of prompts, prompt-tuning using frozen/unfrozen LLMs, transfer learning, and few-shot learning abilities. Methods We developed a soft prompt-based LLM model and compared 4 training strategies including (1) fine-tuning without prompts; (2) hard-prompt with unfrozen LLMs; (3) soft-prompt with unfrozen LLMs; and (4) soft-prompt with frozen LLMs. We evaluated 7 pretrained LLMs using the 4 training strategies for clinical concept and relation extraction on two benchmark datasets. We evaluated the transfer learning ability of the prompt-based learning algorithms in a cross-institution setting. We also assessed the few-shot learning ability. Results and Conclusion When LLMs are unfrozen, GatorTron-3.9B with soft prompting achieves the best strict F1-scores of 0.9118 and 0.8604 for concept extraction, outperforming the traditional fine-tuning and hard prompt-based models by 0.6~3.1% and 1.2~2.9%, respectively; GatorTron-345M with soft prompting achieves the best F1-scores of 0.8332 and 0.7488 for end-to-end relation extraction, outperforming the other two models by 0.2~2% and 0.6~11.7%, respectively. When LLMs are frozen, small (i.e., 345 million parameters) LLMs have a big gap to be competitive with unfrozen models; scaling LLMs up to billions of parameters makes frozen LLMs competitive with unfrozen LLMs. For cross-institute evaluation, soft prompting with a frozen GatorTron-8.9B model achieved the best performance. This study demonstrates that (1) machines can learn soft prompts better than humans, (2) frozen LLMs have better few-shot learning ability and transfer learning ability to facilitate muti-institution applications, and (3) frozen LLMs require large models.
Large language models (LLMs) can perform a new task by merely conditioning on task instructions and a few input-output examples, without optimizing any parameters. This is called In-Context Learning (ICL). In-context Information Extraction (IE) has recently garnered attention in the research community. However, the performance of In-context IE generally lags behind the state-of-the-art supervised expert models. We highlight a key reason for this shortfall: underspecified task description. The limited-length context struggles to thoroughly express the intricate IE task instructions and various edge cases, leading to misalignment in task comprehension with humans. In this paper, we propose a Guideline Learning (GL) framework for In-context IE which reflectively learns and follows guidelines. During the learning phrase, GL automatically synthesizes a set of guidelines based on a few error cases, and during inference, GL retrieves helpful guidelines for better ICL. Moreover, we propose a self-consistency-based active learning method to enhance the efficiency of GL. Experiments on event extraction and relation extraction show that GL can significantly improve the performance of in-context IE.
Relation extraction (RE) consistently involves a certain degree of labeled or unlabeled data even if under zero-shot setting. Recent studies have shown that large language models (LLMs) transfer well to new tasks out-of-the-box simply given a natural language prompt, which provides the possibility of extracting relations from text without any data and parameter tuning. This work focuses on the study of exploring LLMs, such as ChatGPT, as zero-shot relation extractors. On the one hand, we analyze the drawbacks of existing RE prompts and attempt to incorporate recent prompt techniques such as chain-of-thought (CoT) to improve zero-shot RE. We propose the summarize-and-ask (\textsc{SumAsk}) prompting, a simple prompt recursively using LLMs to transform RE inputs to the effective question answering (QA) format. On the other hand, we conduct comprehensive experiments on various benchmarks and settings to investigate the capabilities of LLMs on zero-shot RE. Specifically, we have the following findings: (i) \textsc{SumAsk} consistently and significantly improves LLMs performance on different model sizes, benchmarks and settings; (ii) Zero-shot prompting with ChatGPT achieves competitive or superior results compared with zero-shot and fully supervised methods; (iii) LLMs deliver promising performance in extracting overlapping relations; (iv) The performance varies greatly regarding different relations. Different from small language models, LLMs are effective in handling challenge none-of-the-above (NoTA) relation.
Joint entity and relation extraction is a process that identifies entity pairs and their relations using a single model. We focus on the problem of joint extraction in distantly-labeled data, whose labels are generated by aligning entity mentions with the corresponding entity and relation tags using a knowledge base (KB). One key challenge is the presence of noisy labels arising from both incorrect entity and relation annotations, which significantly impairs the quality of supervised learning. Existing approaches, either considering only one source of noise or making decisions using external knowledge, cannot well-utilize significant information in the training data. We propose DENRL, a generalizable framework that 1) incorporates a lightweight transformer backbone into a sequence labeling scheme for joint tagging, and 2) employs a noise-robust framework that regularizes the tagging model with significant relation patterns and entity-relation dependencies, then iteratively self-adapts to instances with less noise from both sources. Surprisingly, experiments on two benchmark datasets show that DENRL, using merely its own parametric distribution and simple data-driven heuristics, outperforms large language model-based baselines by a large margin with better interpretability.
Large Language Models (LLMs) combined with instruction tuning have made significant progress when generalizing to unseen tasks. However, they have been less successful in Information Extraction (IE), lagging behind task-specific models. Typically, IE tasks are characterized by complex annotation guidelines that describe the task and give examples to humans. Previous attempts to leverage such information have failed, even with the largest models, as they are not able to follow the guidelines out of the box. In this paper, we propose GoLLIE (Guideline-following Large Language Model for IE), a model able to improve zero-shot results on unseen IE tasks by virtue of being fine-tuned to comply with annotation guidelines. Comprehensive evaluation empirically demonstrates that GoLLIE is able to generalize to and follow unseen guidelines, outperforming previous attempts at zero-shot information extraction. The ablation study shows that detailed guidelines are key for good results.
Clinical texts, represented in electronic medical records (EMRs), contain rich medical information and are essential for disease prediction, personalised information recommendation, clinical decision support, and medication pattern mining and measurement. Relation extractions between medication mentions and temporal information can further help clinicians better understand the patients' treatment history. To evaluate the performances of deep learning (DL) and large language models (LLMs) in medication extraction and temporal relations classification, we carry out an empirical investigation of \textbf{MedTem} project using several advanced learning structures including BiLSTM-CRF and CNN-BiLSTM for a clinical domain named entity recognition (NER), and BERT-CNN for temporal relation extraction (RE), in addition to the exploration of different word embedding techniques. Furthermore, we also designed a set of post-processing roles to generate structured output on medications and the temporal relation. Our experiments show that CNN-BiLSTM slightly wins the BiLSTM-CRF model on the i2b2-2009 clinical NER task yielding 75.67, 77.83, and 78.17 for precision, recall, and F1 scores using Macro Average. BERT-CNN model also produced reasonable evaluation scores 64.48, 67.17, and 65.03 for P/R/F1 using Macro Avg on the temporal relation extraction test set from i2b2-2012 challenges. Code and Tools from MedTem will be hosted at \url{https://github.com/HECTA-UoM/MedTem}
Two distinct approaches have been proposed for relational triple extraction - pipeline and joint. Joint models, which capture interactions across triples, are the more recent development, and have been shown to outperform pipeline models for sentence-level extraction tasks. Document-level extraction is a more challenging setting where interactions across triples can be long-range, and individual triples can also span across sentences. Joint models have not been applied for document-level tasks so far. In this paper, we benchmark state-of-the-art pipeline and joint extraction models on sentence-level as well as document-level datasets. Our experiments show that while joint models outperform pipeline models significantly for sentence-level extraction, their performance drops sharply below that of pipeline models for the document-level dataset.
Temporal reasoning is a crucial NLP task, providing a nuanced understanding of time-sensitive contexts within textual data. Although recent advancements in LLMs have demonstrated their potential in temporal reasoning, the predominant focus has been on tasks such as temporal expression and temporal relation extraction. These tasks are primarily designed for the extraction of direct and past temporal cues and to engage in simple reasoning processes. A significant gap remains when considering complex reasoning tasks such as event forecasting, which requires multi-step temporal reasoning on events and prediction on the future timestamp. Another notable limitation of existing methods is their incapability to provide an illustration of their reasoning process, hindering explainability. In this paper, we introduce the first task of explainable temporal reasoning, to predict an event's occurrence at a future timestamp based on context which requires multiple reasoning over multiple events, and subsequently provide a clear explanation for their prediction. Our task offers a comprehensive evaluation of both the LLMs' complex temporal reasoning ability, the future event prediction ability, and explainability-a critical attribute for AI applications. To support this task, we present the first multi-source instruction-tuning dataset of explainable temporal reasoning (ExpTime) with 26k derived from the temporal knowledge graph datasets and their temporal reasoning paths, using a novel knowledge-graph-instructed-generation strategy. Based on the dataset, we propose the first open-source LLM series TimeLlaMA based on the foundation LlaMA2, with the ability of instruction following for explainable temporal reasoning. We compare the performance of our method and a variety of LLMs, where our method achieves the state-of-the-art performance of temporal prediction and explanation.
Unsupervised relation extraction (URE) aims at discovering underlying relations between named entity pairs from open-domain plain text without prior information on relational distribution. Existing URE models utilizing contrastive learning, which attract positive samples and repulse negative samples to promote better separation, have got decent effect. However, fine-grained relational semantic in relationship makes spurious negative samples, damaging the inherent hierarchical structure and hindering performances. To tackle this problem, we propose Siamese Representation Learning for Unsupervised Relation Extraction -- a novel framework to simply leverage positive pairs to representation learning, possessing the capability to effectively optimize relation representation of instances and retain hierarchical information in relational feature space. Experimental results show that our model significantly advances the state-of-the-art results on two benchmark datasets and detailed analyses demonstrate the effectiveness and robustness of our proposed model on unsupervised relation extraction.
Document-level relation extraction (DocRE) is an active area of research in natural language processing (NLP) concerned with identifying and extracting relationships between entities beyond sentence boundaries. Compared to the more traditional sentence-level relation extraction, DocRE provides a broader context for analysis and is more challenging because it involves identifying relationships that may span multiple sentences or paragraphs. This task has gained increased interest as a viable solution to build and populate knowledge bases automatically from unstructured large-scale documents (e.g., scientific papers, legal contracts, or news articles), in order to have a better understanding of relationships between entities. This paper aims to provide a comprehensive overview of recent advances in this field, highlighting its different applications in comparison to sentence-level relation extraction.
Document-level relation extraction (DocRE) aims to extract relations of all entity pairs in a document. A key challenge in DocRE is the cost of annotating such data which requires intensive human effort. Thus, we investigate the case of DocRE in a low-resource setting, and we find that existing models trained on low data overestimate the NA ("no relation") label, causing limited performance. In this work, we approach the problem from a calibration perspective and propose PRiSM, which learns to adapt logits based on relation semantic information. We evaluate our method on three DocRE datasets and demonstrate that integrating existing models with PRiSM improves performance by as much as 26.38 F1 score, while the calibration error drops as much as 36 times when trained with about 3% of data. The code is publicly available at https://github.com/brightjade/PRiSM.
Event understanding aims at understanding the content and relationship of events within texts, which covers multiple complicated information extraction tasks: event detection, event argument extraction, and event relation extraction. To facilitate related research and application, we present an event understanding toolkit OmniEvent, which features three desiderata: (1) Comprehensive. OmniEvent supports mainstream modeling paradigms of all the event understanding tasks and the processing of 15 widely-used English and Chinese datasets. (2) Fair. OmniEvent carefully handles the inconspicuous evaluation pitfalls reported in Peng et al. (2023), which ensures fair comparisons between different models. (3) Easy-to-use. OmniEvent is designed to be easily used by users with varying needs. We provide off-the-shelf models that can be directly deployed as web services. The modular framework also enables users to easily implement and evaluate new event understanding models with OmniEvent. The toolkit (https://github.com/THU-KEG/OmniEvent) is publicly released along with the demonstration website and video (https://omnievent.xlore.cn/).
Event Relation Extraction (ERE) aims to extract multiple kinds of relations among events in texts. However, existing methods singly categorize event relations as different classes, which are inadequately capturing the intrinsic semantics of these relations. To comprehensively understand their intrinsic semantics, in this paper, we obtain prototype representations for each type of event relation and propose a Prototype-Enhanced Matching (ProtoEM) framework for the joint extraction of multiple kinds of event relations. Specifically, ProtoEM extracts event relations in a two-step manner, i.e., prototype representing and prototype matching. In the first step, to capture the connotations of different event relations, ProtoEM utilizes examples to represent the prototypes corresponding to these relations. Subsequently, to capture the interdependence among event relations, it constructs a dependency graph for the prototypes corresponding to these relations and utilized a Graph Neural Network (GNN)-based module for modeling. In the second step, it obtains the representations of new event pairs and calculates their similarity with those prototypes obtained in the first step to evaluate which types of event relations they belong to. Experimental results on the MAVEN-ERE dataset demonstrate that the proposed ProtoEM framework can effectively represent the prototypes of event relations and further obtain a significant improvement over baseline models.
Relation triple extraction (RTE) is an essential task in information extraction and knowledge graph construction. Despite recent advancements, existing methods still exhibit certain limitations. They just employ generalized pre-trained models and do not consider the specificity of RTE tasks. Moreover, existing tagging-based approaches typically decompose the RTE task into two subtasks, initially identifying subjects and subsequently identifying objects and relations. They solely focus on extracting relational triples from subject to object, neglecting that once the extraction of a subject fails, it fails in extracting all triples associated with that subject. To address these issues, we propose BitCoin, an innovative Bidirectional tagging and supervised Contrastive learning based joint relational triple extraction framework. Specifically, we design a supervised contrastive learning method that considers multiple positives per anchor rather than restricting it to just one positive. Furthermore, a penalty term is introduced to prevent excessive similarity between the subject and object. Our framework implements taggers in two directions, enabling triples extraction from subject to object and object to subject. Experimental results show that BitCoin achieves state-of-the-art results on the benchmark datasets and significantly improves the F1 score on Normal, SEO, EPO, and multiple relation extraction tasks.
Recent span-based joint extraction models have demonstrated significant advantages in both entity recognition and relation extraction. These models treat text spans as candidate entities, and span pairs as candidate relationship tuples, achieving state-of-the-art results on datasets like ADE. However, these models encounter a significant number of non-entity spans or irrelevant span pairs during the tasks, impairing model performance significantly. To address this issue, this paper introduces a span-based multitask entity-relation joint extraction model. This approach employs the multitask learning to alleviate the impact of negative samples on entity and relation classifiers. Additionally, we leverage the Intersection over Union(IoU) concept to introduce the positional information into the entity classifier, achieving a span boundary detection. Furthermore, by incorporating the entity Logits predicted by the entity classifier into the embedded representation of entity pairs, the semantic input for the relation classifier is enriched. Experimental results demonstrate that our proposed SpERT.MT model can effectively mitigate the adverse effects of excessive negative samples on the model performance. Furthermore, the model demonstrated commendable F1 scores of 73.61\%, 53.72\%, and 83.72\% on three widely employed public datasets, namely CoNLL04, SciERC, and ADE, respectively.
Contextual Relation Extraction (CRE) is mainly used for constructing a knowledge graph with a help of ontology. It performs various tasks such as semantic search, query answering, and textual entailment. Relation extraction identifies the entities from raw texts and the relations among them. An efficient and accurate CRE system is essential for creating domain knowledge in the biomedical industry. Existing Machine Learning and Natural Language Processing (NLP) techniques are not suitable to predict complex relations from sentences that consist of more than two relations and unspecified entities efficiently. In this work, deep learning techniques have been used to identify the appropriate semantic relation based on the context from multiple sentences. Even though various machine learning models have been used for relation extraction, they provide better results only for binary relations, i.e., relations occurred exactly between the two entities in a sentence. Machine learning models are not suited for complex sentences that consist of the words that have various meanings. To address these issues, hybrid deep learning models have been used to extract the relations from complex sentence effectively. This paper explores the analysis of various deep learning models that are used for relation extraction.
Electronic health records contain an enormous amount of valuable information, but many are recorded in free text. Information extraction is the strategy to transform the sequence of characters into structured data, which can be employed for secondary analysis. However, the traditional information extraction components, such as named entity recognition and relation extraction, require annotated data to optimize the model parameters, which has become one of the major bottlenecks in building information extraction systems. With the large language models achieving good performances on various downstream NLP tasks without parameter tuning, it becomes possible to use large language models for zero-shot information extraction. In this study, we aim to explore whether the most popular large language model, ChatGPT, can extract useful information from the radiological reports. We first design the prompt template for the interested information in the CT reports. Then, we generate the prompts by combining the prompt template with the CT reports as the inputs of ChatGPT to obtain the responses. A post-processing module is developed to transform the responses into structured extraction results. We conducted the experiments with 847 CT reports collected from Peking University Cancer Hospital. The experimental results indicate that ChatGPT can achieve competitive performances for some extraction tasks compared with the baseline information extraction system, but some limitations need to be further improved.
Relation Extraction (RE) is the task of extracting semantic relationships between entities in a sentence and aligning them to relations defined in a vocabulary, which is generally in the form of a Knowledge Graph (KG) or an ontology. Various approaches have been proposed so far to address this task. However, applying these techniques to biomedical text often yields unsatisfactory results because it is hard to infer relations directly from sentences due to the nature of the biomedical relations. To address these issues, we present a novel technique called ReOnto, that makes use of neuro symbolic knowledge for the RE task. ReOnto employs a graph neural network to acquire the sentence representation and leverages publicly accessible ontologies as prior knowledge to identify the sentential relation between two entities. The approach involves extracting the relation path between the two entities from the ontology. We evaluate the effect of using symbolic knowledge from ontologies with graph neural networks. Experimental results on two public biomedical datasets, BioRel and ADE, show that our method outperforms all the baselines (approximately by 3\%).