Chest X-rays have been widely used for COVID-19 screening; however, 3D computed tomography (CT) is a more effective modality. We present our findings on COVID-19 severity prediction from chest CT scans using the STOIC dataset. We developed an ensemble deep learning based model that incorporates multiple neural networks to improve predictions. To address data imbalance, we used slicing functions and data augmentation. We further improved performance using test time data augmentation. Our approach which employs a simple yet effective ensemble of deep learning-based models with strong test time augmentations, achieved results comparable to more complex methods and secured the fourth position in the STOIC2021 COVID-19 AI Challenge. Our code is available on online: at: https://github.com/aleemsidra/stoic2021- baseline-finalphase-main.
Deep learning models form one of the most powerful machine learning models for the extraction of important features. Most of the designs of deep neural models, i.e., the initialization of parameters, are still manually tuned. Hence, obtaining a model with high performance is exceedingly time-consuming and occasionally impossible. Optimizing the parameters of the deep networks, therefore, requires improved optimization algorithms with high convergence rates. The single objective-based optimization methods generally used are mostly time-consuming and do not guarantee optimum performance in all cases. Mathematical optimization problems containing multiple objective functions that must be optimized simultaneously fall under the category of multi-objective optimization sometimes referred to as Pareto optimization. Multi-objective optimization problems form one of the alternatives yet useful options for parameter optimization. However, this domain is a bit less explored. In this survey, we focus on exploring the effectiveness of multi-objective optimization strategies for parameter optimization in conjunction with deep neural networks. The case studies used in this study focus on how the two methods are combined to provide valuable insights into the generation of predictions and analysis in multiple applications.
Tabular data is the most widely used data format in machine learning (ML). While tree-based methods outperform DL-based methods in supervised learning, recent literature reports that self-supervised learning with Transformer-based models outperforms tree-based methods. In the existing literature on self-supervised learning for tabular data, contrastive learning is the predominant method. In contrastive learning, data augmentation is important to generate different views. However, data augmentation for tabular data has been difficult due to the unique structure and high complexity of tabular data. In addition, three main components are proposed together in existing methods: model structure, self-supervised learning methods, and data augmentation. Therefore, previous works have compared the performance without comprehensively considering these components, and it is not clear how each component affects the actual performance. In this study, we focus on data augmentation to address these issues. We propose a novel data augmentation method, $\textbf{M}$ask $\textbf{T}$oken $\textbf{R}$eplacement ($\texttt{MTR}$), which replaces the mask token with a portion of each tokenized column; $\texttt{MTR}$ takes advantage of the properties of Transformer, which is becoming the predominant DL-based architecture for tabular data, to perform data augmentation for each column embedding. Through experiments with 13 diverse public datasets in both supervised and self-supervised learning scenarios, we show that $\texttt{MTR}$ achieves competitive performance against existing data augmentation methods and improves model performance. In addition, we discuss specific scenarios in which $\texttt{MTR}$ is most effective and identify the scope of its application. The code is available at https://github.com/somaonishi/MTR/.
The increasing use of deep learning techniques has reduced interpretation time and, ideally, reduced interpreter bias by automatically deriving geological maps from digital outcrop models. However, accurate validation of these automated mapping approaches is a significant challenge due to the subjective nature of geological mapping and the difficulty in collecting quantitative validation data. Additionally, many state-of-the-art deep learning methods are limited to 2D image data, which is insufficient for 3D digital outcrops, such as hyperclouds. To address these challenges, we present Tinto, a multi-sensor benchmark digital outcrop dataset designed to facilitate the development and validation of deep learning approaches for geological mapping, especially for non-structured 3D data like point clouds. Tinto comprises two complementary sets: 1) a real digital outcrop model from Corta Atalaya (Spain), with spectral attributes and ground-truth data, and 2) a synthetic twin that uses latent features in the original datasets to reconstruct realistic spectral data (including sensor noise and processing artifacts) from the ground-truth. The point cloud is dense and contains 3,242,964 labeled points. We used these datasets to explore the abilities of different deep learning approaches for automated geological mapping. By making Tinto publicly available, we hope to foster the development and adaptation of new deep learning tools for 3D applications in Earth sciences. The dataset can be accessed through this link: https://doi.org/10.14278/rodare.2256.
Sea surface temperature (SST) forecasts help with managing the marine ecosystem and the aquaculture impacted by anthropogenic climate change. Numerical dynamical models are resource intensive for SST forecasts; machine learning (ML) models could reduce high computational requirements and have been in the focus of the research community recently. ML models normally require a large amount of data for training. Environmental data are collected on regularly-spaced grids, so early work mainly used grid-based deep learning (DL) for prediction. However, both grid data and the corresponding DL approaches have inherent problems. As geometric DL has emerged, graphs as a more generalized data structure and graph neural networks (GNNs) have been introduced to the spatiotemporal domains. In this work, we preliminarily explored graph re-sampling and GNNs for global SST forecasts, and GNNs show better one month ahead SST prediction than the persistence model in most oceans in terms of root mean square errors.
Visual quality inspection in high performance manufacturing can benefit from automation, due to cost savings and improved rigor. Deep learning techniques are the current state of the art for generic computer vision tasks like classification and object detection. Manufacturing data can pose a challenge for deep learning because data is highly repetitive and there are few images of defects or deviations to learn from. Deep learning models trained with such data can be fragile and sensitive to context, and can under-detect new defects not found in the training data. In this work, we explore training defect detection models to learn specific defects out of context, so that they are more likely to be detected in new situations. We demonstrate how models trained on diverse images containing a common defect type can pick defects out in new circumstances. Such generic models could be more robust to new defects not found data collected for training, and can reduce data collection impediments to implementing visual inspection on production lines. Additionally, we demonstrate that object detection models trained to predict a label and bounding box outperform classifiers that predict a label only on held out test data typical of manufacturing inspection tasks. Finally, we studied the factors that affect generalization in order to train models that work under a wider range of conditions.
Solar flares are energetic events in the solar atmosphere that are often linked with solar radio bursts (SRBs). SRBs are observed at metric to decametric wavelengths and are classified into five spectral classes (Type I--V) based on their signature in dynamic spectra. The automatic detection and classification of SRBs is a challenge due to their heterogeneous form. Near-realtime detection and classification of SRBs has become a necessity in recent years due to large data rates generated by advanced radio telescopes such as the LOw Frequency ARray (LOFAR). In this study, we implement congruent deep learning models to automatically detect and classify Type III SRBs. We generated simulated Type III SRBs, which were comparable to Type IIIs seen in real observations, using a deep learning method known as Generative Adversarial Network (GAN). This simulated data was combined with observations from LOFAR to produce a training set that was used to train an object detection model known as YOLOv2 (You Only Look Once). Using this congruent deep learning model system, we can accurately detect Type III SRBs at a mean Average Precision (mAP) value of 77.71%.
Though robustness of networks to random attacks has been widely studied, intentional destruction by an intelligent agent is not tractable with previous methods. Here we devise a single-player game on a lattice that mimics the logic of an attacker attempting to destroy a network. The objective of the game is to disable all nodes in the fewest number of steps. We develop a reinforcement learning approach using deep Q-learning that is capable of learning to play this game successfully, and in so doing, to optimally attack a network. Because the learning algorithm is universal, we train agents on different definitions of robustness and compare the learned strategies. We find that superficially similar definitions of robustness induce different strategies in the trained agent, implying that optimally attacking or defending a network is sensitive the particular objective. Our method provides a new approach to understand network robustness, with potential applications to other discrete processes in disordered systems.
Java is very powerful, but in Deep Learning field, its capabilities probably has not been sufficiently exploited. Compared to the Java-based deep-learning-frameworks, the Python-based (PyTorch, TensorFlow, etc) are undoubtedly the mainstream, due to their easy-to-use, flexibility and better ecosystem. Dragon-Alpha is a Java-based Tensor Computing Framework, with easy-to-use, high-scalability and high-performance, trying to break Java's dilemma in deep learning field and make it more effective. Dragon-Alpha supports different levels of APIs, and can be used as a deep-learning-framework through its user-friendly high-level APIs. Dragon-Alpha has potential to aggregate computing-power across heterogeneous platforms and devices, based on its multi-layer architecture and Java's big-data ecosystem. Dragon-Alpha has its asynchronized APIs to improve parallelism, and highly-optimized CUDA library cu32 which adopts unique convolution\deconvolution operators for small feature maps. The experiments show that, compared to PyTorch&cuDNN, Dragon-Alpha&cu32 costs less time and memory (75.38% to 97.32%, 29.2% to 66.4%), to train some typical neural networks (AlexNet, VGG, GoogleNet, ResNet) on Cifar-10.
With the growth of computer vision applications, deep learning, and edge computing contribute to ensuring practical collaborative intelligence (CI) by distributing the workload among edge devices and the cloud. However, running separate single-task models on edge devices is inefficient regarding the required computational resource and time. In this context, multi-task learning allows leveraging a single deep learning model for performing multiple tasks, such as semantic segmentation and depth estimation on incoming video frames. This single processing pipeline generates common deep features that are shared among multi-task modules. However, in a collaborative intelligence scenario, generating common deep features has two major issues. First, the deep features may inadvertently contain input information exposed to the downstream modules (violating input privacy). Second, the generated universal features expose a piece of collective information than what is intended for a certain task, in which features for one task can be utilized to perform another task (violating task privacy). This paper proposes a novel deep learning-based privacy-cognizant feature generation process called MetaMorphosis that limits inference capability to specific tasks at hand. To achieve this, we propose a channel squeeze-excitation based feature metamorphosis module, Cross-SEC, to achieve distinct attention of all tasks and a de-correlation loss function with differential-privacy to train a deep learning model that produces distinct privacy-aware features as an output for the respective tasks. With extensive experimentation on four datasets consisting of diverse images related to scene understanding and facial attributes, we show that MetaMorphosis outperforms recent adversarial learning and universal feature generation methods by guaranteeing privacy requirements in an efficient way for image and video analytics.
Statistical shape modeling is the computational process of discovering significant shape parameters from segmented anatomies captured by medical images (such as MRI and CT scans), which can fully describe subject-specific anatomy in the context of a population. The presence of substantial non-linear variability in human anatomy often makes the traditional shape modeling process challenging. Deep learning techniques can learn complex non-linear representations of shapes and generate statistical shape models that are more faithful to the underlying population-level variability. However, existing deep learning models still have limitations and require established/optimized shape models for training. We propose Mesh2SSM, a new approach that leverages unsupervised, permutation-invariant representation learning to estimate how to deform a template point cloud to subject-specific meshes, forming a correspondence-based shape model. Mesh2SSM can also learn a population-specific template, reducing any bias due to template selection. The proposed method operates directly on meshes and is computationally efficient, making it an attractive alternative to traditional and deep learning-based SSM approaches.
Deep learning based channel state information (CSI) feedback in frequency division duplex systems has drawn much attention in both academia and industry. In this paper, we focus on integrating the Type-II codebook in the beyond fifth-generation (B5G) wireless systems with deep learning to enhance the performance of CSI feedback. In contrast to its counterpart in Release 16, the Type-II codebook in Release 17 (R17) exploits the angular-delay-domain partial reciprocity between uplink and downlink channels and selects part of angular-delay-domain ports for measuring and feeding back the downlink CSI, where the performance of the conventional deep learning methods is limited due to the deficiency of sparse structures. To address this issue, we propose the new paradigm of adopting deep learning to improve the performance of R17 Type-II codebook. Firstly, considering the relatively low signal-to-noise ratio of uplink channels, deep learning is utilized to refine the selection of the dominant angular-delay-domain ports, where the focal loss is harnessed to solve the class imbalance problem. Secondly, we propose to reconstruct the downlink CSI by way of deep learning based on the feedback of R17 Type-II codebook at the base station, where the information of sparse structures can be effectively leveraged. Finally, a weighted shortcut module is designed to facilitate the accurate reconstruction, and a two-stage loss function with the combination of the mean squared error and sum rate is proposed for adapting to actual multi-user scenarios. Simulation results demonstrate that our proposed angular-delay-domain port selection and CSI reconstruction paradigm can improve the sum rate performance by more than 10% compared with the traditional R17 Type-II codebook and deep learning benchmarks.
With the growing adoption of AI-based systems across everyday life, the need to understand their decision-making mechanisms is correspondingly increasing. The level at which we can trust the statistical inferences made from AI-based decision systems is an increasing concern, especially in high-risk systems such as criminal justice or medical diagnosis, where incorrect inferences may have tragic consequences. Despite their successes in providing solutions to problems involving real-world data, deep learning (DL) models cannot quantify the certainty of their predictions. These models are frequently quite confident, even when their solutions are incorrect. This work presents a method to infer prominent features in two DL classification models trained on clinical and non-clinical text by employing techniques from topological and geometric data analysis. We create a graph of a model's feature space and cluster the inputs into the graph's vertices by the similarity of features and prediction statistics. We then extract subgraphs demonstrating high-predictive accuracy for a given label. These subgraphs contain a wealth of information about features that the DL model has recognized as relevant to its decisions. We infer these features for a given label using a distance metric between probability measures, and demonstrate the stability of our method compared to the LIME and SHAP interpretability methods. This work establishes that we may gain insights into the decision mechanism of a DL model. This method allows us to ascertain if the model is making its decisions based on information germane to the problem or identifies extraneous patterns within the data.
Grant-free non-orthogonal multiple access has been regarded as a viable approach to accommodate access for a massive number of machine-type devices with small data packets. The sporadic activation of the devices creates a multiuser setup where it is suitable to use compressed sensing in order to detect the active devices and decode their data. We consider asynchronous access of machine-type devices that send data packets of different frame sizes, leading to data length diversity. We address the composite problem of activity detection, channel estimation, and data recovery by posing it as a structured sparse recovery, having three-level sparsity caused by sporadic activity, symbol delay, and data length diversity. We approach the problem through approximate message passing with a backward propagation algorithm (AMP-BP), tailored to exploit the sparsity, and in particular the data length diversity. Moreover, we unfold the proposed AMP-BP into a model-driven network, termed learned AMP-BP (LAMP-BP), which enhances detection performance. The results show that the proposed LAMP-BP outperforms existing methods in activity detection and data recovery accuracy.
End-to-end semantic communications (ESC) rely on deep neural networks (DNN) to boost communication efficiency by only transmitting the semantics of data, showing great potential for high-demand mobile applications. We argue that central to the success of ESC is the robust interpretation of conveyed semantics at the receiver side, especially for security-critical applications such as automatic driving and smart healthcare. However, robustifying semantic interpretation is challenging as ESC is extremely vulnerable to physical-layer adversarial attacks due to the openness of wireless channels and the fragileness of neural models. Toward ESC robustness in practice, we ask the following two questions: Q1: For attacks, is it possible to generate semantic-oriented physical-layer adversarial attacks that are imperceptible, input-agnostic and controllable? Q2: Can we develop a defense strategy against such semantic distortions and previously proposed adversaries? To this end, we first present MobileSC, a novel semantic communication framework that considers the computation and memory efficiency in wireless environments. Equipped with this framework, we propose SemAdv, a physical-layer adversarial perturbation generator that aims to craft semantic adversaries over the air with the abovementioned criteria, thus answering the Q1. To better characterize the realworld effects for robust training and evaluation, we further introduce a novel adversarial training method SemMixed to harden the ESC against SemAdv attacks and existing strong threats, thus answering the Q2. Extensive experiments on three public benchmarks verify the effectiveness of our proposed methods against various physical adversarial attacks. We also show some interesting findings, e.g., our MobileSC can even be more robust than classical block-wise communication systems in the low SNR regime.
Activation functions are essential to deep learning networks. Popular and versatile activation functions are mostly monotonic functions, some non-monotonic activation functions are being explored and show promising performance. But by introducing non-monotonicity, they also alter the positive input, which is proved to be unnecessary by the success of ReLU and its variants. In this paper, we double down on the non-monotonic activation functions' development and propose the Saturated Gaussian Error Linear Units by combining the characteristics of ReLU and non-monotonic activation functions. We present three new activation functions built with our proposed method: SGELU, SSiLU, and SMish, which are composed of the negative portion of GELU, SiLU, and Mish, respectively, and ReLU's positive portion. The results of image classification experiments on CIFAR-100 indicate that our proposed activation functions are highly effective and outperform state-of-the-art baselines across multiple deep learning architectures.
This paper introduces and explores a new programming paradigm, Model-based Programming, designed to address the challenges inherent in applying deep learning models to real-world applications. Despite recent significant successes of deep learning models across a range of tasks, their deployment in real business scenarios remains fraught with difficulties, such as complex model training, large computational resource requirements, and integration issues with existing programming languages. To ameliorate these challenges, we propose the concept of 'Model-based Programming' and present a novel programming language - M Language, tailored to a prospective model-centered programming paradigm. M Language treats models as basic computational units, enabling developers to concentrate more on crucial tasks such as model loading, fine-tuning, evaluation, and deployment, thereby enhancing the efficiency of creating deep learning applications. We posit that this innovative programming paradigm will stimulate the extensive application and advancement of deep learning technology and provide a robust foundation for a model-driven future.
The Quran is the holy scripture of Islam, and its recitation is an important aspect of the religion. Recognizing the recitation of the Holy Quran automatically is a challenging task due to its unique rules that are not applied in normal speaking speeches. A lot of research has been done in this domain, but previous works have detected recitation errors as a classification task or used traditional automatic speech recognition (ASR). In this paper, we proposed a novel end-to-end deep learning model for recognizing the recitation of the Holy Quran. The proposed model is a CNN-Bidirectional GRU encoder that uses CTC as an objective function, and a character-based decoder which is a beam search decoder. Moreover, all previous works were done on small private datasets consisting of short verses and a few chapters of the Holy Quran. As a result of using private datasets, no comparisons were done. To overcome this issue, we used a public dataset that has recently been published (Ar-DAD) and contains about 37 chapters that were recited by 30 reciters, with different recitation speeds and different types of pronunciation rules. The proposed model performance was evaluated using the most common evaluation metrics in speech recognition, word error rate (WER), and character error rate (CER). The results were 8.34% WER and 2.42% CER. We hope this research will be a baseline for comparisons with future research on this public new dataset (Ar-DAD).
In the ongoing quest for hybridizing discrete reasoning with neural nets, there is an increasing interest in neural architectures that can learn how to solve discrete reasoning or optimization problems from natural inputs. In this paper, we introduce a scalable neural architecture and loss function dedicated to learning the constraints and criteria of NP-hard reasoning problems expressed as discrete Graphical Models. Our loss function solves one of the main limitations of Besag's pseudo-loglikelihood, enabling learning of high energies. We empirically show it is able to efficiently learn how to solve NP-hard reasoning problems from natural inputs as the symbolic, visual or many-solutions Sudoku problems as well as the energy optimization formulation of the protein design problem, providing data efficiency, interpretability, and \textit{a posteriori} control over predictions.
Deep representation learning is a ubiquitous part of modern computer vision. While Euclidean space has been the de facto standard manifold for learning visual representations, hyperbolic space has recently gained rapid traction for learning in computer vision. Specifically, hyperbolic learning has shown a strong potential to embed hierarchical structures, learn from limited samples, quantify uncertainty, add robustness, limit error severity, and more. In this paper, we provide a categorization and in-depth overview of current literature on hyperbolic learning for computer vision. We research both supervised and unsupervised literature and identify three main research themes in each direction. We outline how hyperbolic learning is performed in all themes and discuss the main research problems that benefit from current advances in hyperbolic learning for computer vision. Moreover, we provide a high-level intuition behind hyperbolic geometry and outline open research questions to further advance research in this direction.