Imaging and genomic data offer distinct and rich features, and their integration can unveil new insights into the complex landscape of diseases. In this study, we present a novel approach utilizing radiogenomic data including structural MRI images and gene expression data, for Alzheimer's disease detection. Our framework introduces a novel heterogeneous bipartite graph representation learning featuring two distinct node types: genes and images. The network can effectively classify Alzheimer's disease (AD) into three distinct stages:AD, Mild Cognitive Impairment (MCI), and Cognitive Normal (CN) classes, utilizing a small dataset. Additionally, it identified which genes play a significant role in each of these classification groups. We evaluate the performance of our approach using metrics including classification accuracy, recall, precision, and F1 score. The proposed technique holds potential for extending to radiogenomic-based classification to other diseases.
Large-scale pre-trained Vision-Language Models (VLMs) have significantly advanced transfer learning across diverse tasks. However, adapting these models with limited few-shot data often leads to overfitting, undermining their ability to generalize to new tasks. To address this, we propose Multi-Modal Representation Learning (MMRL), which introduces a shared, learnable, modality-agnostic representation space. MMRL generates space tokens projected into both text and image encoders as representation tokens, enabling more effective cross-modal interactions. Unlike prior methods that mainly optimize class token features, MMRL inserts representation tokens into higher encoder layers--where task-specific features are more prominent--while preserving general knowledge in the lower layers. During training, both class and representation features are jointly optimized: a trainable projection layer is applied to representation tokens for task adaptation, while the projection layer for class token remains frozen to retain pre-trained knowledge. To further promote generalization, we introduce a regularization term aligning class and text features with the frozen VLM's zero-shot features. At inference, a decoupling strategy uses both class and representation features for base tasks, but only class features for novel tasks due to their stronger generalization. Building upon this, we propose MMRL++, a parameter-efficient and interaction-aware extension that significantly reduces trainable parameters and enhances intra-modal interactions--particularly across the layers of representation tokens--allowing gradient sharing and instance-specific information to propagate more effectively through the network. Extensive experiments on 15 datasets demonstrate that MMRL and MMRL++ consistently outperform state-of-the-art methods, achieving a strong balance between task-specific adaptation and generalization.
Location Intelligence (LI), the science of transforming location-centric geospatial data into actionable knowledge, has become a cornerstone of modern spatial decision-making. The rapid evolution of Geospatial Representation Learning is fundamentally reshaping LI development through two successive technological revolutions: the deep learning breakthrough and the emerging large language model (LLM) paradigm. While deep neural networks (DNNs) have demonstrated remarkable success in automated feature extraction from structured geospatial data (e.g., satellite imagery, GPS trajectories), the recent integration of LLMs introduces transformative capabilities for cross-modal geospatial reasoning and unstructured geo-textual data processing. This survey presents a comprehensive review of geospatial representation learning across both technological eras, organizing them into a structured taxonomy based on the complete pipeline comprising: (1) data perspective, (2) methodological perspective and (3) application perspective. We also highlight current advancements, discuss existing limitations, and propose potential future research directions in the LLM era. This work offers a thorough exploration of the field and providing a roadmap for further innovation in LI. The summary of the up-to-date paper list can be found in https://github.com/CityMind-Lab/Awesome-Location-Intelligence and will undergo continuous updates.
Endoscopic video-based tasks, such as visual navigation and surgical phase recognition, play a crucial role in minimally invasive surgeries by providing real-time assistance. While recent video foundation models have shown promise, their applications are hindered by (1) computational inefficiencies and (2) suboptimal performance caused by limited data for pre-training in endoscopy. To address these issues, we present EndoMamba, a foundation model designed for real-time inference while learning generalized spatiotemporal representations. First, to mitigate computational inefficiencies, we propose the EndoMamba backbone, optimized for real-time inference. Inspired by recent advancements in state space models, EndoMamba integrates Bidirectional Mamba blocks for spatial modeling within individual frames and vanilla Mamba blocks for past-to-present reasoning across the temporal domain. This design enables both strong spatiotemporal modeling and efficient inference in online video streams. Second, we propose a self-supervised hierarchical pre-training diagram to enhance EndoMamba's representation learning using endoscopic videos and incorporating general video domain knowledge. Specifically, our approach combines masked reconstruction with auxiliary supervision, leveraging low-level reconstruction to capture spatial-temporal structures and high-level alignment to transfer broader knowledge from a pretrained general-video domain foundation model. Extensive experiments on four downstream tasks--classification, segmentation, surgical phase recognition, and localization--demonstrate that EndoMamba outperforms existing foundation models and task-specific methods while maintaining real-time inference speed. The source code is available at https://github.com/TianCuteQY/EndoMamba.
The Information Bottleneck (IB) method frequently suffers from unstable optimization, characterized by abrupt representation shifts near critical points of the IB trade-off parameter, beta. In this paper, I introduce a novel approach to achieve stable and convex IB optimization through symbolic continuation and entropy-regularized trajectories. I analytically prove convexity and uniqueness of the IB solution path when an entropy regularization term is included, and demonstrate how this stabilizes representation learning across a wide range of \b{eta} values. Additionally, I provide extensive sensitivity analyses around critical points (beta) with statistically robust uncertainty quantification (95% confidence intervals). The open-source implementation, experimental results, and reproducibility framework included in this work offer a clear path for practical deployment and future extension of my proposed method.
Most of the dynamic graph representation learning methods involve dividing a dynamic graph into discrete snapshots to capture the evolving behavior of nodes over time. Existing methods primarily capture only local or global structures of each node within a snapshot using message-passing and random walk-based methods. Then, they utilize sequence-based models (e.g., transformers) to encode the temporal evolution of node embeddings, and meta-learning techniques to update the model parameters. However, these approaches have two limitations. First, they neglect the extraction of global and local information simultaneously in each snapshot. Second, they fail to consider the model's performance in the current snapshot during parameter updates, resulting in a lack of temporal dependency management. Recently, HiPPO (High-order Polynomial Projection Operators) algorithm has gained attention for their ability to optimize and preserve sequence history in State Space Model (SSM). To address the aforementioned limitations in dynamic graph representation learning, we propose a novel method called Multi-view Dynamic Graph Embeddings with State Space Model Gradient Update (DyGSSM). Our approach combines Graph Convolution Networks (GCN) for local feature extraction and random walk with Gated Recurrent Unit (GRU) for global feature extraction in each snapshot. We then integrate the local and global features using a cross-attention mechanism. Additionally, we incorporate an SSM based on HiPPO algorithm to account for long-term dependencies when updating model parameters, ensuring that model performance in each snapshot informs subsequent updates. Experiments on five public datasets show that our method outperforms existing baseline and state-of-the-art (SOTA) methods in 17 out of 20 cases.
In this paper, we introduce MultiviewVLM, a vision-language model designed for unsupervised contrastive multiview representation learning of facial emotions from 3D/4D data. Our architecture integrates pseudo-labels derived from generated textual prompts to guide implicit alignment of emotional semantics. To capture shared information across multi-views, we propose a joint embedding space that aligns multiview representations without requiring explicit supervision. We further enhance the discriminability of our model through a novel multiview contrastive learning strategy that leverages stable positive-negative pair sampling. A gradient-friendly loss function is introduced to promote smoother and more stable convergence, and the model is optimized for distributed training to ensure scalability. Extensive experiments demonstrate that MultiviewVLM outperforms existing state-of-the-art methods and can be easily adapted to various real-world applications with minimal modifications.
Current applications of self-supervised learning to wireless channel representation often borrow paradigms developed for text and image processing, without fully addressing the unique characteristics and constraints of wireless communications. Aiming to fill this gap, we first propose WiMAE (Wireless Masked Autoencoder), a transformer-based encoder-decoder foundation model pretrained on a realistic open-source multi-antenna wireless channel dataset. Building upon this foundation, we develop ContraWiMAE, which enhances WiMAE by incorporating a contrastive learning objective alongside the reconstruction task in a unified multi-task framework. By warm-starting from pretrained WiMAE weights and generating positive pairs via noise injection, the contrastive component enables the model to capture both structural and discriminative features, enhancing representation quality beyond what reconstruction alone can achieve. Through extensive evaluation on unseen scenarios, we demonstrate the effectiveness of both approaches across multiple downstream tasks, with ContraWiMAE showing further improvements in linear separability and adaptability in diverse wireless environments. Comparative evaluations against a state-of-the-art wireless channel foundation model confirm the superior performance and data efficiency of our models, highlighting their potential as powerful baselines for future research in self-supervised wireless channel representation learning.
While pre-trained language models excel at semantic understanding, they often struggle to capture nuanced affective information critical for affective recognition tasks. To address these limitations, we propose a novel framework for enhancing emotion-aware embeddings in transformer-based models. Our approach introduces a continuous valence-arousal labeling system to guide contrastive learning, which captures subtle and multi-dimensional emotional nuances more effectively. Furthermore, we employ a dynamic token perturbation mechanism, using gradient-based saliency to focus on sentiment-relevant tokens, improving model sensitivity to emotional cues. The experimental results demonstrate that the proposed framework outperforms existing methods, achieving up to 15.5% improvement in the emotion classification benchmark, highlighting the importance of employing continuous labels. This improvement demonstrates that the proposed framework is effective in affective representation learning and enables precise and contextually relevant emotional understanding.
Long-term time series forecasting (LTSF) offers broad utility in practical settings like energy consumption and weather prediction. Accurately predicting long-term changes, however, is demanding due to the intricate temporal patterns and inherent multi-scale variations within time series. This work confronts key issues in LTSF, including the suboptimal use of multi-granularity information, the neglect of channel-specific attributes, and the unique nature of trend and seasonal components, by introducing a proficient MLP-based forecasting framework. Our method adeptly disentangles complex temporal dynamics using clear, concurrent predictions across various scales. These multi-scale forecasts are then skillfully integrated through a system that dynamically assigns importance to information from different granularities, sensitive to individual channel characteristics. To manage the specific features of temporal patterns, a two-pronged structure is utilized to model trend and seasonal elements independently. Experimental results on eight LTSF benchmarks demonstrate that MDMixer improves average MAE performance by 4.64% compared to the recent state-of-the-art MLP-based method (TimeMixer), while achieving an effective balance between training efficiency and model interpretability.
Causal inference has emerged as a promising approach to mitigate long-tail classification by handling the biases introduced by class imbalance. However, along with the change of advanced backbone models from Convolutional Neural Networks (CNNs) to Visual Transformers (ViT), existing causal models may not achieve an expected performance gain. This paper investigates the influence of existing causal models on CNNs and ViT variants, highlighting that ViT's global feature representation makes it hard for causal methods to model associations between fine-grained features and predictions, which leads to difficulties in classifying tail classes with similar visual appearance. To address these issues, this paper proposes TSCNet, a two-stage causal modeling method to discover fine-grained causal associations through multi-scale causal interventions. Specifically, in the hierarchical causal representation learning stage (HCRL), it decouples the background and objects, applying backdoor interventions at both the patch and feature level to prevent model from using class-irrelevant areas to infer labels which enhances fine-grained causal representation. In the counterfactual logits bias calibration stage (CLBC), it refines the optimization of model's decision boundary by adaptive constructing counterfactual balanced data distribution to remove the spurious associations in the logits caused by data distribution. Extensive experiments conducted on various long-tail benchmarks demonstrate that the proposed TSCNet can eliminate multiple biases introduced by data imbalance, which outperforms existing methods.
The use of large language models (LLMs) as feature enhancers to optimize node representations, which are then used as inputs for graph neural networks (GNNs), has shown significant potential in graph representation learning. However, the fundamental properties of this approach remain underexplored. To address this issue, we propose conducting a more in-depth analysis of this issue based on the interchange intervention method. First, we construct a synthetic graph dataset with controllable causal relationships, enabling precise manipulation of semantic relationships and causal modeling to provide data for analysis. Using this dataset, we conduct interchange interventions to examine the deeper properties of LLM enhancers and GNNs, uncovering their underlying logic and internal mechanisms. Building on the analytical results, we design a plug-and-play optimization module to improve the information transfer between LLM enhancers and GNNs. Experiments across multiple datasets and models validate the proposed module.
Graph Neural Networks (GNNs) address two key challenges in applying deep learning to graph-structured data: they handle varying size input graphs and ensure invariance under graph isomorphism. While GNNs have demonstrated broad applicability, understanding their expressive power remains an important question. In this paper, we show that bounded GNN architectures correspond to specific fragments of first-order logic (FO), including modal logic (ML), graded modal logic (GML), modal logic with the universal modality (ML(A)), the two-variable fragment (FO2) and its extension with counting quantifiers (C2). To establish these results, we apply methods and tools from finite model theory of first-order and modal logics to the domain of graph representation learning. This provides a unifying framework for understanding the logical expressiveness of GNNs within FO.
Nowadays, numerous online platforms can be described as multi-modal heterogeneous networks (MMHNs), such as Douban's movie networks and Amazon's product review networks. Accurately categorizing nodes within these networks is crucial for analyzing the corresponding entities, which requires effective representation learning on nodes. However, existing multi-modal fusion methods often adopt either early fusion strategies which may lose the unique characteristics of individual modalities, or late fusion approaches overlooking the cross-modal guidance in GNN-based information propagation. In this paper, we propose a novel model for node classification in MMHNs, named Heterogeneous Graph Neural Network with Inter-Modal Attention (HGNN-IMA). It learns node representations by capturing the mutual influence of multiple modalities during the information propagation process, within the framework of heterogeneous graph transformer. Specifically, a nested inter-modal attention mechanism is integrated into the inter-node attention to achieve adaptive multi-modal fusion, and modality alignment is also taken into account to encourage the propagation among nodes with consistent similarities across all modalities. Moreover, an attention loss is augmented to mitigate the impact of missing modalities. Extensive experiments validate the superiority of the model in the node classification task, providing an innovative view to handle multi-modal data, especially when accompanied with network structures.
This paper presents $\mathbf{OLinear}$, a $\mathbf{linear}$-based multivariate time series forecasting model that operates in an $\mathbf{o}$rthogonally transformed domain. Recent forecasting models typically adopt the temporal forecast (TF) paradigm, which directly encode and decode time series in the time domain. However, the entangled step-wise dependencies in series data can hinder the performance of TF. To address this, some forecasters conduct encoding and decoding in the transformed domain using fixed, dataset-independent bases (e.g., sine and cosine signals in the Fourier transform). In contrast, we utilize $\mathbf{OrthoTrans}$, a data-adaptive transformation based on an orthogonal matrix that diagonalizes the series' temporal Pearson correlation matrix. This approach enables more effective encoding and decoding in the decorrelated feature domain and can serve as a plug-in module to enhance existing forecasters. To enhance the representation learning for multivariate time series, we introduce a customized linear layer, $\mathbf{NormLin}$, which employs a normalized weight matrix to capture multivariate dependencies. Empirically, the NormLin module shows a surprising performance advantage over multi-head self-attention, while requiring nearly half the FLOPs. Extensive experiments on 24 benchmarks and 140 forecasting tasks demonstrate that OLinear consistently achieves state-of-the-art performance with high efficiency. Notably, as a plug-in replacement for self-attention, the NormLin module consistently enhances Transformer-based forecasters. The code and datasets are available at https://anonymous.4open.science/r/OLinear
Generalization in reinforcement learning (RL) remains a significant challenge, especially when agents encounter novel environments with unseen dynamics. Drawing inspiration from human compositional reasoning -- where known components are reconfigured to handle new situations -- we introduce World Modeling with Compositional Causal Components (WM3C). This novel framework enhances RL generalization by learning and leveraging compositional causal components. Unlike previous approaches focusing on invariant representation learning or meta-learning, WM3C identifies and utilizes causal dynamics among composable elements, facilitating robust adaptation to new tasks. Our approach integrates language as a compositional modality to decompose the latent space into meaningful components and provides theoretical guarantees for their unique identification under mild assumptions. Our practical implementation uses a masked autoencoder with mutual information constraints and adaptive sparsity regularization to capture high-level semantic information and effectively disentangle transition dynamics. Experiments on numerical simulations and real-world robotic manipulation tasks demonstrate that WM3C significantly outperforms existing methods in identifying latent processes, improving policy learning, and generalizing to unseen tasks.
Geometric representation learning in preserving the intrinsic geometric and topological properties for discrete non-Euclidean data is crucial in scientific applications. Previous research generally mapped non-Euclidean discrete data into Euclidean space during representation learning, which may lead to the loss of some critical geometric information. In this paper, we propose a novel Isometric Immersion Kernel Learning (IIKL) method to build Riemannian manifold and isometrically induce Riemannian metric from discrete non-Euclidean data. We prove that Isometric immersion is equivalent to the kernel function in the tangent bundle on the manifold, which explicitly guarantees the invariance of the inner product between vectors in the arbitrary tangent space throughout the learning process, thus maintaining the geometric structure of the original data. Moreover, a novel parameterized learning model based on IIKL is introduced, and an alternating training method for this model is derived using Maximum Likelihood Estimation (MLE), ensuring efficient convergence. Experimental results proved that using the learned Riemannian manifold and its metric, our model preserved the intrinsic geometric representation of data in both 3D and high-dimensional datasets successfully, and significantly improved the accuracy of downstream tasks, such as data reconstruction and classification. It is showed that our method could reduce the inner product invariant loss by more than 90% compared to state-of-the-art (SOTA) methods, also achieved an average 40% improvement in downstream reconstruction accuracy and a 90% reduction in error for geometric metrics involving isometric and conformal.
We present an interpretability framework for unsupervised reinforcement learning (URL) agents, aimed at understanding how intrinsic motivation shapes attention, behavior, and representation learning. We analyze five agents DQN, RND, ICM, PPO, and a Transformer-RND variant trained on procedurally generated environments, using Grad-CAM, Layer-wise Relevance Propagation (LRP), exploration metrics, and latent space clustering. To capture how agents perceive and adapt over time, we introduce two metrics: attention diversity, which measures the spatial breadth of focus, and attention change rate, which quantifies temporal shifts in attention. Our findings show that curiosity-driven agents display broader, more dynamic attention and exploratory behavior than their extrinsically motivated counterparts. Among them, TransformerRND combines wide attention, high exploration coverage, and compact, structured latent representations. Our results highlight the influence of architectural inductive biases and training signals on internal agent dynamics. Beyond reward-centric evaluation, the proposed framework offers diagnostic tools to probe perception and abstraction in RL agents, enabling more interpretable and generalizable behavior.
AI fairness, also known as algorithmic fairness, aims to ensure that algorithms operate without bias or discrimination towards any individual or group. Among various AI algorithms, the Fair Representation Learning (FRL) approach has gained significant interest in recent years. However, existing FRL algorithms have a limitation: they are primarily designed for categorical sensitive attributes and thus cannot be applied to continuous sensitive attributes, such as age or income. In this paper, we propose an FRL algorithm for continuous sensitive attributes. First, we introduce a measure called the Expectation of Integral Probability Metrics (EIPM) to assess the fairness level of representation space for continuous sensitive attributes. We demonstrate that if the distribution of the representation has a low EIPM value, then any prediction head constructed on the top of the representation become fair, regardless of the selection of the prediction head. Furthermore, EIPM possesses a distinguished advantage in that it can be accurately estimated using our proposed estimator with finite samples. Based on these properties, we propose a new FRL algorithm called Fair Representation using EIPM with MMD (FREM). Experimental evidences show that FREM outperforms other baseline methods.
How do neural language models acquire a language's structure when trained for next-token prediction? We address this question by deriving theoretical scaling laws for neural network performance on synthetic datasets generated by the Random Hierarchy Model (RHM) -- an ensemble of probabilistic context-free grammars designed to capture the hierarchical structure of natural language while remaining analytically tractable. Previously, we developed a theory of representation learning based on data correlations that explains how deep learning models capture the hierarchical structure of the data sequentially, one layer at a time. Here, we extend our theoretical framework to account for architectural differences. In particular, we predict and empirically validate that convolutional networks, whose structure aligns with that of the generative process through locality and weight sharing, enjoy a faster scaling of performance compared to transformer models, which rely on global self-attention mechanisms. This finding clarifies the architectural biases underlying neural scaling laws and highlights how representation learning is shaped by the interaction between model architecture and the statistical properties of data.