Human-object interaction (HOI) detection aims to comprehend the intricate relationships between humans and objects, predicting $<human, action, object>$ triplets, and serving as the foundation for numerous computer vision tasks. The complexity and diversity of human-object interactions in the real world, however, pose significant challenges for both annotation and recognition, particularly in recognizing interactions within an open world context. This study explores the universal interaction recognition in an open-world setting through the use of Vision-Language (VL) foundation models and large language models (LLMs). The proposed method is dubbed as \emph{\textbf{UniHOI}}. We conduct a deep analysis of the three hierarchical features inherent in visual HOI detectors and propose a method for high-level relation extraction aimed at VL foundation models, which we call HO prompt-based learning. Our design includes an HO Prompt-guided Decoder (HOPD), facilitates the association of high-level relation representations in the foundation model with various HO pairs within the image. Furthermore, we utilize a LLM (\emph{i.e.} GPT) for interaction interpretation, generating a richer linguistic understanding for complex HOIs. For open-category interaction recognition, our method supports either of two input types: interaction phrase or interpretive sentence. Our efficient architecture design and learning methods effectively unleash the potential of the VL foundation models and LLMs, allowing UniHOI to surpass all existing methods with a substantial margin, under both supervised and zero-shot settings. The code and pre-trained weights are available at: \url{https://github.com/Caoyichao/UniHOI}.
End-to-end relation extraction (E2ERE) is an important and realistic application of natural language processing (NLP) in biomedicine. In this paper, we aim to compare three prevailing paradigms for E2ERE using a complex dataset focused on rare diseases involving discontinuous and nested entities. We use the RareDis information extraction dataset to evaluate three competing approaches (for E2ERE): NER $\rightarrow$ RE pipelines, joint sequence to sequence models, and generative pre-trained transformer (GPT) models. We use comparable state-of-the-art models and best practices for each of these approaches and conduct error analyses to assess their failure modes. Our findings reveal that pipeline models are still the best, while sequence-to-sequence models are not far behind; GPT models with eight times as many parameters are worse than even sequence-to-sequence models and lose to pipeline models by over 10 F1 points. Partial matches and discontinuous entities caused many NER errors contributing to lower overall E2E performances. We also verify these findings on a second E2ERE dataset for chemical-protein interactions. Although generative LM-based methods are more suitable for zero-shot settings, when training data is available, our results show that it is better to work with more conventional models trained and tailored for E2ERE. More innovative methods are needed to marry the best of the both worlds from smaller encoder-decoder pipeline models and the larger GPT models to improve E2ERE. As of now, we see that well designed pipeline models offer substantial performance gains at a lower cost and carbon footprint for E2ERE. Our contribution is also the first to conduct E2ERE for the RareDis dataset.
Recently, ChatGPT has attracted a lot of interest from both researchers and the general public. While the performance of ChatGPT in named entity recognition and relation extraction from Standard English texts is satisfactory, it remains to be seen if it can perform similarly for Malaysian English. Malaysian English is unique as it exhibits morphosyntactic and semantical adaptation from local contexts. In this study, we assess ChatGPT's capability in extracting entities and relations from the Malaysian English News (MEN) dataset. We propose a three-step methodology referred to as \textbf{\textit{educate-predict-evaluate}}. The performance of ChatGPT is assessed using F1-Score across 18 unique prompt settings, which were carefully engineered for a comprehensive review. From our evaluation, we found that ChatGPT does not perform well in extracting entities from Malaysian English news articles, with the highest F1-Score of 0.497. Further analysis shows that the morphosyntactic adaptation in Malaysian English caused the limitation. However, interestingly, this morphosyntactic adaptation does not impact the performance of ChatGPT for relation extraction.
Objective: Most existing fine-tuned biomedical large language models (LLMs) focus on enhancing performance in monolingual biomedical question answering and conversation tasks. To investigate the effectiveness of the fine-tuned LLMs on diverse biomedical NLP tasks in different languages, We present Taiyi, a bilingual fine-tuned LLM for diverse biomedical tasks. Materials and Methods: We first curated a comprehensive collection of 140 existing biomedical text mining datasets (102 English and 38 Chinese datasets) across over 10 task types. Subsequently, a two-stage strategy is proposed for supervised fine-tuning to optimize the model performance across varied tasks. Results: Experimental results on 13 test sets covering named entity recognition, relation extraction, text classification, question answering tasks demonstrate that Taiyi achieves superior performance compared to general LLMs. The case study involving additional biomedical NLP tasks further shows Taiyi's considerable potential for bilingual biomedical multi-tasking. Conclusion: Leveraging rich high-quality biomedical corpora and developing effective fine-tuning strategies can significantly improve the performance of LLMs within the biomedical domain. Taiyi shows the bilingual multi-tasking capability through supervised fine-tuning. However, those tasks such as information extraction that are not generation tasks in nature remain challenging for LLM-based generative approaches, and they still underperform the conventional discriminative approaches of smaller language models.
Extracting fine-grained experimental findings from literature can provide dramatic utility for scientific applications. Prior work has developed annotation schemas and datasets for limited aspects of this problem, failing to capture the real-world complexity and nuance required. Focusing on biomedicine, this work presents CARE -- a new IE dataset for the task of extracting clinical findings. We develop a new annotation schema capturing fine-grained findings as n-ary relations between entities and attributes, which unifies phenomena challenging for current IE systems such as discontinuous entity spans, nested relations, variable arity n-ary relations and numeric results in a single schema. We collect extensive annotations for 700 abstracts from two sources: clinical trials and case reports. We also demonstrate the generalizability of our schema to the computer science and materials science domains. We benchmark state-of-the-art IE systems on CARE, showing that even models such as GPT4 struggle. We release our resources to advance research on extracting and aggregating literature findings.
Interpolation-based Data Augmentation (DA) methods (Mixup) linearly interpolate the inputs and labels of two or more training examples. Mixup has more recently been adapted to the field of Natural Language Processing (NLP), mainly for sequence labeling tasks. However, such a simple adoption yields mixed or unstable improvements over the baseline models. We argue that the direct-adoption methods do not account for structures in NLP tasks. To this end, we propose SegMix, a collection of interpolation-based DA algorithms that can adapt to task-specific structures. SegMix poses fewer constraints on data structures, is robust to various hyperparameter settings, applies to more task settings, and adds little computational overhead. In the algorithm's core, we apply interpolation methods on task-specific meaningful segments, in contrast to applying them on sequences as in prior work. We find SegMix to be a flexible framework that combines rule-based DA methods with interpolation-based methods, creating interesting mixtures of DA techniques. We show that SegMix consistently improves performance over strong baseline models in Named Entity Recognition (NER) and Relation Extraction (RE) tasks, especially under data-scarce settings. Furthermore, this method is easy to implement and adds negligible training overhead.
Understanding events in texts is a core objective of natural language understanding, which requires detecting event occurrences, extracting event arguments, and analyzing inter-event relationships. However, due to the annotation challenges brought by task complexity, a large-scale dataset covering the full process of event understanding has long been absent. In this paper, we introduce MAVEN-Arg, which augments MAVEN datasets with event argument annotations, making the first all-in-one dataset supporting event detection, event argument extraction (EAE), and event relation extraction. As an EAE benchmark, MAVEN-Arg offers three main advantages: (1) a comprehensive schema covering 162 event types and 612 argument roles, all with expert-written definitions and examples; (2) a large data scale, containing 98,591 events and 290,613 arguments obtained with laborious human annotation; (3) the exhaustive annotation supporting all task variants of EAE, which annotates both entity and non-entity event arguments in document level. Experiments indicate that MAVEN-Arg is quite challenging for both fine-tuned EAE models and proprietary large language models (LLMs). Furthermore, to demonstrate the benefits of an all-in-one dataset, we preliminarily explore a potential application, future event prediction, with LLMs. MAVEN-Arg and codes can be obtained from https://github.com/THU-KEG/MAVEN-Argument.
Scientific information extraction (SciIE), which aims to automatically extract information from scientific literature, is becoming more important than ever. However, there are no existing SciIE datasets for polymer materials, which is an important class of materials used ubiquitously in our daily lives. To bridge this gap, we introduce POLYIE, a new SciIE dataset for polymer materials. POLYIE is curated from 146 full-length polymer scholarly articles, which are annotated with different named entities (i.e., materials, properties, values, conditions) as well as their N-ary relations by domain experts. POLYIE presents several unique challenges due to diverse lexical formats of entities, ambiguity between entities, and variable-length relations. We evaluate state-of-the-art named entity extraction and relation extraction models on POLYIE, analyze their strengths and weaknesses, and highlight some difficult cases for these models. To the best of our knowledge, POLYIE is the first SciIE benchmark for polymer materials, and we hope it will lead to more research efforts from the community on this challenging task. Our code and data are available on: https://github.com/jerry3027/PolyIE.
The sparsity of labelled data is an obstacle to the development of Relation Extraction models and the completion of databases in various biomedical areas. While being of high interest in drug-discovery, the natural-products literature, reporting the identification of potential bioactive compounds from organisms, is a concrete example of such an overlooked topic. To mark the start of this new task, we created the first curated evaluation dataset and extracted literature items from the LOTUS database to build training sets. To this end, we developed a new sampler inspired by diversity metrics in ecology, named Greedy Maximum Entropy sampler, or GME-sampler (https://github.com/idiap/gme-sampler). The strategic optimization of both balance and diversity of the selected items in the evaluation set is important given the resource-intensive nature of manual curation. After quantifying the noise in the training set, in the form of discrepancies between the input abstracts text and the expected output labels, we explored different strategies accordingly. Framing the task as an end-to-end Relation Extraction, we evaluated the performance of standard fine-tuning as a generative task and few-shot learning with open Large Language Models (LLaMA 7B-65B). In addition to their evaluation in few-shot settings, we explore the potential of open Large Language Models (Vicuna-13B) as synthetic data generator and propose a new workflow for this purpose. All evaluated models exhibited substantial improvements when fine-tuned on synthetic abstracts rather than the original noisy data. We provide our best performing (f1-score=59.0) BioGPT-Large model for end-to-end RE of natural-products relationships along with all the generated synthetic data and the evaluation dataset. See more details at https://github.com/idiap/abroad-re.
Information Extraction (IE) stands as a cornerstone in natural language processing, traditionally segmented into distinct sub-tasks. The advent of Large Language Models (LLMs) heralds a paradigm shift, suggesting the feasibility of a singular model addressing multiple IE subtasks. In this vein, we introduce the General Information Extraction Large Language Model (GIELLM), which integrates text Classification, Sentiment Analysis, Named Entity Recognition, Relation Extraction, and Event Extraction using a uniform input-output schema. This innovation marks the first instance of a model simultaneously handling such a diverse array of IE subtasks. Notably, the GIELLM leverages the Mutual Reinforcement Effect (MRE), enhancing performance in integrated tasks compared to their isolated counterparts. Our experiments demonstrate State-of-the-Art (SOTA) results in five out of six Japanese mixed datasets, significantly surpassing GPT-3.5-Turbo. Further, an independent evaluation using the novel Text Classification Relation and Event Extraction(TCREE) dataset corroborates the synergistic advantages of MRE in text and word classification. This breakthrough paves the way for most IE subtasks to be subsumed under a singular LLM framework. Specialized fine-tune task-specific models are no longer needed.
Document-level Relation Extraction (DocRE), which aims to extract relations from a long context, is a critical challenge in achieving fine-grained structural comprehension and generating interpretable document representations. Inspired by recent advances in in-context learning capabilities emergent from large language models (LLMs), such as ChatGPT, we aim to design an automated annotation method for DocRE with minimum human effort. Unfortunately, vanilla in-context learning is infeasible for document-level relation extraction due to the plenty of predefined fine-grained relation types and the uncontrolled generations of LLMs. To tackle this issue, we propose a method integrating a large language model (LLM) and a natural language inference (NLI) module to generate relation triples, thereby augmenting document-level relation datasets. We demonstrate the effectiveness of our approach by introducing an enhanced dataset known as DocGNRE, which excels in re-annotating numerous long-tail relation types. We are confident that our method holds the potential for broader applications in domain-specific relation type definitions and offers tangible benefits in advancing generalized language semantic comprehension.
Few-shot relation extraction involves identifying the type of relationship between two specific entities within a text, using a limited number of annotated samples. A variety of solutions to this problem have emerged by applying meta-learning and neural graph techniques which typically necessitate a training process for adaptation. Recently, the strategy of in-context learning has been demonstrating notable results without the need of training. Few studies have already utilized in-context learning for zero-shot information extraction. Unfortunately, the evidence for inference is either not considered or implicitly modeled during the construction of chain-of-thought prompts. In this paper, we propose a novel approach for few-shot relation extraction using large language models, named CoT-ER, chain-of-thought with explicit evidence reasoning. In particular, CoT-ER first induces large language models to generate evidences using task-specific and concept-level knowledge. Then these evidences are explicitly incorporated into chain-of-thought prompting for relation extraction. Experimental results demonstrate that our CoT-ER approach (with 0% training data) achieves competitive performance compared to the fully-supervised (with 100% training data) state-of-the-art approach on the FewRel1.0 and FewRel2.0 datasets.
Unified Sequence Labeling that articulates different sequence labeling problems such as Named Entity Recognition, Relation Extraction, Semantic Role Labeling, etc. in a generalized sequence-to-sequence format opens up the opportunity to make the maximum utilization of large language model knowledge toward structured prediction. Unfortunately, this requires formatting them into specialized augmented format unknown to the base pretrained language model (PLMs) necessitating finetuning to the target format. This significantly bounds its usefulness in data-limited settings where finetuning large models cannot properly generalize to the target format. To address this challenge and leverage PLM knowledge effectively, we propose FISH-DIP, a sample-aware dynamic sparse finetuning strategy that selectively focuses on a fraction of parameters, informed by feedback from highly regressing examples, during the fine-tuning process. By leveraging the dynamism of sparsity, our approach mitigates the impact of well-learned samples and prioritizes underperforming instances for improvement in generalization. Across five tasks of sequence labeling, we demonstrate that FISH-DIP can smoothly optimize the model in low resource settings offering upto 40% performance improvements over full fine-tuning depending on target evaluation settings. Also, compared to in-context learning and other parameter-efficient fine-tuning approaches, FISH-DIP performs comparably or better, notably in extreme low-resource settings.
The NLP community typically relies on performance of a model on a held-out test set to assess generalization. Performance drops observed in datasets outside of official test sets are generally attributed to "out-of-distribution" effects. Here, we explore the foundations of generalizability and study the factors that affect it, articulating lessons from clinical studies. In clinical research, generalizability is an act of reasoning that depends on (a) internal validity of experiments to ensure controlled measurement of cause and effect, and (b) external validity or transportability of the results to the wider population. We demonstrate how learning spurious correlations, such as the distance between entities in relation extraction tasks, can affect a model's internal validity and in turn adversely impact generalization. We, therefore, present the need to ensure internal validity when building machine learning models in NLP. Our recommendations also apply to generative large language models, as they are known to be sensitive to even minor semantic preserving alterations. We also propose adapting the idea of matching in randomized controlled trials and observational studies to NLP evaluation to measure causation.
Relational extraction is one of the basic tasks related to information extraction in the field of natural language processing, and is an important link and core task in the fields of information extraction, natural language understanding, and information retrieval. None of the existing relation extraction methods can effectively solve the problem of triple overlap. The CasAug model proposed in this paper based on the CasRel framework combined with the semantic enhancement mechanism can solve this problem to a certain extent. The CasAug model enhances the semantics of the identified possible subjects by adding a semantic enhancement mechanism, First, based on the semantic coding of possible subjects, pre-classify the possible subjects, and then combine the subject lexicon to calculate the semantic similarity to obtain the similar vocabulary of possible subjects. According to the similar vocabulary obtained, each word in different relations is calculated through the attention mechanism. For the contribution of the possible subject, finally combine the relationship pre-classification results to weight the enhanced semantics of each relationship to find the enhanced semantics of the possible subject, and send the enhanced semantics combined with the possible subject to the object and relationship extraction module. Complete the final relation triplet extraction. The experimental results show that, compared with the baseline model, the CasAug model proposed in this paper has improved the effect of relation extraction, and CasAug's ability to deal with overlapping problems and extract multiple relations is also better than the baseline model, indicating that the semantic enhancement mechanism proposed in this paper It can further reduce the judgment of redundant relations and alleviate the problem of triple overlap.
Natural Language Processing (NLP) is a key technique for developing Medical Artificial Intelligence (AI) systems that leverage Electronic Health Record (EHR) data to build diagnostic and prognostic models. NLP enables the conversion of unstructured clinical text into structured data that can be fed into AI algorithms. The emergence of the transformer architecture and large language models (LLMs) has led to remarkable advances in NLP for various healthcare tasks, such as entity recognition, relation extraction, sentence similarity, text summarization, and question answering. In this article, we review the major technical innovations that underpin modern NLP models and present state-of-the-art NLP applications that employ LLMs in radiation oncology research. However, these LLMs are prone to many errors such as hallucinations, biases, and ethical violations, which necessitate rigorous evaluation and validation before clinical deployment. As such, we propose a comprehensive framework for assessing the NLP models based on their purpose and clinical fit, technical performance, bias and trust, legal and ethical implications, and quality assurance, prior to implementation in clinical radiation oncology. Our article aims to provide guidance and insights for researchers and clinicians who are interested in developing and using NLP models in clinical radiation oncology.
Relation Extraction from News Articles (RENA) is a browser-based tool designed to extract key entities and their semantic relationships in English language news articles related to infectious diseases. Constructed using the React framework, this system presents users with an elegant and user-friendly interface. It enables users to input a news article and select from a choice of two models to generate a comprehensive list of relations within the provided text. As a result, RENA allows real-time parsing of news articles to extract key information for epidemic surveillance, contributing to EPIWATCH, an open-source intelligence-based epidemic warning system.
The packing problem, also known as cutting or nesting, has diverse applications in logistics, manufacturing, layout design, and atlas generation. It involves arranging irregularly shaped pieces to minimize waste while avoiding overlap. Recent advances in machine learning, particularly reinforcement learning, have shown promise in addressing the packing problem. In this work, we delve deeper into a novel machine learning-based approach that formulates the packing problem as conditional generative modeling. To tackle the challenges of irregular packing, including object validity constraints and collision avoidance, our method employs the score-based diffusion model to learn a series of gradient fields. These gradient fields encode the correlations between constraint satisfaction and the spatial relationships of polygons, learned from teacher examples. During the testing phase, packing solutions are generated using a coarse-to-fine refinement mechanism guided by the learned gradient fields. To enhance packing feasibility and optimality, we introduce two key architectural designs: multi-scale feature extraction and coarse-to-fine relation extraction. We conduct experiments on two typical industrial packing domains, considering translations only. Empirically, our approach demonstrates spatial utilization rates comparable to, or even surpassing, those achieved by the teacher algorithm responsible for training data generation. Additionally, it exhibits some level of generalization to shape variations. We are hopeful that this method could pave the way for new possibilities in solving the packing problem.
Prevalent supervised learning methods in natural language processing (NLP) are notoriously data-hungry, which demand large amounts of high-quality annotated data. In practice, acquiring such data is a costly endeavor. Recently, the superior few-shot performance of large language models (LLMs) has propelled the development of dataset generation, where the training data are solely synthesized from LLMs. However, such an approach usually suffers from low-quality issues, and requires orders of magnitude more labeled data to achieve satisfactory performance. To fully exploit the potential of LLMs and make use of massive unlabeled data, we propose LLMaAA, which takes LLMs as annotators and puts them into an active learning loop to determine what to annotate efficiently. To learn robustly with pseudo labels, we optimize both the annotation and training processes: (1) we draw k-NN examples from a small demonstration pool as in-context examples, and (2) we adopt the example reweighting technique to assign training samples with learnable weights. Compared with previous approaches, LLMaAA features both efficiency and reliability. We conduct experiments and analysis on two classic NLP tasks, named entity recognition and relation extraction. With LLMaAA, task-specific models trained from LLM-generated labels can outperform the teacher within only hundreds of annotated examples, which is much more cost-effective than other baselines.
Document-level relation extraction (DocRE) involves identifying relations between entities distributed in multiple sentences within a document. Existing methods focus on building a heterogeneous document graph to model the internal structure of an entity and the external interaction between entities. However, there are two drawbacks in existing methods. On one hand, anaphor plays an important role in reasoning to identify relations between entities but is ignored by these methods. On the other hand, these methods achieve cross-sentence entity interactions implicitly by utilizing a document or sentences as intermediate nodes. Such an approach has difficulties in learning fine-grained interactions between entities across different sentences, resulting in sub-optimal performance. To address these issues, we propose an Anaphor-Assisted (AA) framework for DocRE tasks. Experimental results on the widely-used datasets demonstrate that our model achieves a new state-of-the-art performance.