Social determinants of health (SDOH) affect health outcomes, and knowledge of SDOH can inform clinical decision-making. Automatically extracting SDOH information from clinical text requires data-driven information extraction models trained on annotated corpora that are heterogeneous and frequently include critical SDOH. This work presents a new corpus with SDOH annotations, a novel active learning framework, and the first extraction results on the new corpus. The Social History Annotation Corpus (SHAC) includes 4,480 social history sections with detailed annotation for 12 SDOH characterizing the status, extent, and temporal information of 18K distinct events. We introduce a novel active learning framework that selects samples for annotation using a surrogate text classification task as a proxy for a more complex event extraction task. The active learning framework successfully increases the frequency of health risk factors and improves automatic extraction of these events over undirected annotation. An event extraction model trained on SHAC achieves high extraction performance for substance use status (0.82-0.93 F1), employment status (0.81-0.86 F1), and living status type (0.81-0.93 F1) on data from three institutions.
Event extraction (EE) is one of the core information extraction tasks, whose purpose is to automatically identify and extract information about incidents and their actors from texts. This may be beneficial to several domains such as knowledge bases, question answering, information retrieval and summarization tasks, to name a few. The problem of extracting event information from texts is longstanding and usually relies on elaborately designed lexical and syntactic features, which, however, take a large amount of human effort and lack generalization. More recently, deep neural network approaches have been adopted as a means to learn underlying features automatically. However, existing networks do not make full use of syntactic features, which play a fundamental role in capturing very long-range dependencies. Also, most approaches extract each argument of an event separately without considering associations between arguments which ultimately leads to low efficiency, especially in sentences with multiple events. To address the two above-referred problems, we propose a novel joint event extraction framework that aims to extract multiple event triggers and arguments simultaneously by introducing shortest dependency path (SDP) in the dependency graph. We do this by eliminating irrelevant words in the sentence, thus capturing long-range dependencies. Also, an attention-based graph convolutional network is proposed, to carry syntactically related information along the shortest paths between argument candidates that captures and aggregates the latent associations between arguments; a problem that has been overlooked by most of the literature. Our results show a substantial improvement over state-of-the-art methods.
In this paper, we address a practical scenario where training data is released in a sequence of small-scale batches and annotation in earlier phases has lower quality than the later counterparts. To tackle the situation, we utilize a pre-trained transformer network to preserve and integrate the most salient document information from the earlier batches while focusing on the annotation (presumably with higher quality) from the current batch. Using event extraction as a case study, we demonstrate in the experiments that our proposed framework can perform better than conventional approaches (the improvement ranges from 3.6 to 14.9% absolute F-score gain), especially when there is more noise in the early annotation; and our approach spares 19.1% time with regard to the best conventional method.
We propose an approach to predict the natural gas price in several days using historical price data and events extracted from news headlines. Most previous methods treats price as an extrapolatable time series, those analyze the relation between prices and news either trim their price data correspondingly to a public news dataset, manually annotate headlines or use off-the-shelf tools. In comparison to off-the-shelf tools, our event extraction method detects not only the occurrence of phenomena but also the changes in attribution and characteristics from public sources. Instead of using sentence embedding as a feature, we use every word of the extracted events, encode and organize them before feeding to the learning models. Empirical results show favorable results, in terms of prediction performance, money saved and scalability.
We ask whether text understanding has progressed to where we may extract event information through incremental refinement of bleached statements derived from annotation manuals. Such a capability would allow for the trivial construction and extension of an extraction framework by intended end-users through declarations such as, "Some person was born in some location at some time." We introduce an example of a model that employs such statements, with experiments illustrating we can extract events under closed ontologies and generalize to unseen event types simply by reading new definitions.
Extraction of financial and economic events from text has previously been done mostly using rule-based methods, with more recent works employing machine learning techniques. This work is in line with this latter approach, leveraging relevant Wikipedia sections to extract weak labels for sentences describing economic events. Whereas previous weakly supervised approaches required a knowledge-base of such events, or corresponding financial figures, our approach requires no such additional data, and can be employed to extract economic events related to companies which are not even mentioned in the training data.
Event detection (ED), a sub-task of event extraction, involves identifying triggers and categorizing event mentions. Existing methods primarily rely upon supervised learning and require large-scale labeled event datasets which are unfortunately not readily available in many real-life applications. In this paper, we consider and reformulate the ED task with limited labeled data as a Few-Shot Learning problem. We propose a Dynamic-Memory-Based Prototypical Network (DMB-PN), which exploits Dynamic Memory Network (DMN) to not only learn better prototypes for event types, but also produce more robust sentence encodings for event mentions. Differing from vanilla prototypical networks simply computing event prototypes by averaging, which only consume event mentions once, our model is more robust and is capable of distilling contextual information from event mentions for multiple times due to the multi-hop mechanism of DMNs. The experiments show that DMB-PN not only deals with sample scarcity better than a series of baseline models but also performs more robustly when the variety of event types is relatively large and the instance quantity is extremely small.
We tackle the nested and overlapping event detection task and propose a novel search-based neural network (SBNN) structured prediction model that treats the task as a search problem on a relation graph of trigger-argument structures. Unlike existing structured prediction tasks such as dependency parsing, the task targets to detect DAG structures, which constitute events, from the relation graph. We define actions to construct events and use all the beams in a beam search to detect all event structures that may be overlapping and nested. The search process constructs events in a bottom-up manner while modelling the global properties for nested and overlapping structures simultaneously using neural networks. We show that the model achieves performance comparable to the state-of-the-art model Turku Event Extraction System (TEES) on the BioNLP Cancer Genetics (CG) Shared Task 2013 without the use of any syntactic and hand-engineered features. Further analyses on the development set show that our model is more computationally efficient while yielding higher F1-score performance.
We propose a joint event and temporal relation extraction model with shared representation learning and structured prediction. The proposed method has two advantages over existing work. First, it improves event representation by allowing the event and relation modules to share the same contextualized embeddings and neural representation learner. Second, it avoids error propagation in the conventional pipeline systems by leveraging structured inference and learning methods to assign both the event labels and the temporal relation labels jointly. Experiments show that the proposed method can improve both event extraction and temporal relation extraction over state-of-the-art systems, with the end-to-end F1 improved by 10% and 6.8% on two benchmark datasets respectively.
Due to the exponential growth of biomedical literature, event and relation extraction are important tasks in biomedical text mining. Most work only focus on relation extraction, and detect a single entity pair mention on a short span of text, which is not ideal due to long sentences that appear in biomedical contexts. We propose an approach to both relation and event extraction, for simultaneously predicting relationships between all mention pairs in a text. We also perform an empirical study to discuss different network setups for this purpose. The best performing model includes a set of multi-head attentions and convolutions, an adaptation of the transformer architecture, which offers self-attention the ability to strengthen dependencies among related elements, and models the interaction between features extracted by multiple attention heads. Experiment results demonstrate that our approach outperforms the state of the art on a set of benchmark biomedical corpora including BioNLP 2009, 2011, 2013 and BioCreative 2017 shared tasks.
We examine the capabilities of a unified, multi-task framework for three information extraction tasks: named entity recognition, relation extraction, and event extraction. Our framework (called DyGIE++) accomplishes all tasks by enumerating, refining, and scoring text spans designed to capture local (within-sentence) and global (cross-sentence) context. Our framework achieves state-of-the-art results across all tasks, on four datasets from a variety of domains. We perform experiments comparing different techniques to construct span representations. Contextualized embeddings like BERT perform well at capturing relationships among entities in the same or adjacent sentences, while dynamic span graph updates model long-range cross-sentence relationships. For instance, propagating span representations via predicted coreference links can enable the model to disambiguate challenging entity mentions. Our code is publicly available at https://github.com/dwadden/dygiepp and can be easily adapted for new tasks or datasets.
Event extraction from news articles is a commonly required prerequisite for various tasks, such as article summarization, article clustering, and news aggregation. Due to the lack of universally applicable and publicly available methods tailored to news datasets, many researchers redundantly implement event extraction methods for their own projects. The journalistic 5W1H questions are capable of describing the main event of an article, i.e., by answering who did what, when, where, why, and how. We provide an in-depth description of an improved version of Giveme5W1H, a system that uses syntactic and domain-specific rules to automatically extract the relevant phrases from English news articles to provide answers to these 5W1H questions. Given the answers to these questions, the system determines an article's main event. In an expert evaluation with three assessors and 120 articles, we determined an overall precision of p=0.73, and p=0.82 for answering the first four W questions, which alone can sufficiently summarize the main event reported on in a news article. We recently made our system publicly available, and it remains the only universal open-source 5W1H extractor capable of being applied to a wide range of use cases in news analysis.
Official reports of hate crimes in the US are under-reported relative to the actual number of such incidents. Further, despite statistical approximations, there are no official reports from a large number of US cities regarding incidents of hate. Here, we first demonstrate that event extraction and multi-instance learning, applied to a corpus of local news articles, can be used to predict instances of hate crime. We then use the trained model to detect incidents of hate in cities for which the FBI lacks statistics. Lastly, we train models on predicting homicide and kidnapping, compare the predictions to FBI reports, and establish that incidents of hate are indeed under-reported, compared to other types of crimes, in local press.
To extract the structured representations of open-domain events, Bayesian graphical models have made some progress. However, these approaches typically assume that all words in a document are generated from a single event. While this may be true for short text such as tweets, such an assumption does not generally hold for long text such as news articles. Moreover, Bayesian graphical models often rely on Gibbs sampling for parameter inference which may take long time to converge. To address these limitations, we propose an event extraction model based on Generative Adversarial Nets, called Adversarial-neural Event Model (AEM). AEM models an event with a Dirichlet prior and uses a generator network to capture the patterns underlying latent events. A discriminator is used to distinguish documents reconstructed from the latent events and the original documents. A byproduct of the discriminator is that the features generated by the learned discriminator network allow the visualization of the extracted events. Our model has been evaluated on two Twitter datasets and a news article dataset. Experimental results show that our model outperforms the baseline approaches on all the datasets, with more significant improvements observed on the news article dataset where an increase of 15\% is observed in F-measure.
The problem of event extraction is a relatively difficult task for low resource languages due to the non-availability of sufficient annotated data. Moreover, the task becomes complex for tail (rarely occurring) labels wherein extremely less data is available. In this paper, we present a new dataset (InDEE-2019) in the disaster domain for multiple Indic languages, collected from news websites. Using this dataset, we evaluate several rule-based mechanisms to augment deep learning based models. We formulate our problem of event extraction as a sequence labeling task and perform extensive experiments to study and understand the effectiveness of different approaches. We further show that tail labels can be easily incorporated by creating new rules without the requirement of large annotated data.
The work presented in this master thesis consists of extracting a set of events from texts written in natural language. For this purpose, we have based ourselves on the basic notions of the information extraction as well as the open information extraction. First, we applied an open information extraction(OIE) system for the relationship extraction, to highlight the importance of OIEs in event extraction, and we used the ontology to the event modeling. We tested the results of our approach with test metrics. As a result, the two-level event extraction approach has shown good performance results but requires a lot of expert intervention in the construction of classifiers and this will take time. In this context we have proposed an approach that reduces the expert intervention in the relation extraction, the recognition of entities and the reasoning which are automatic and based on techniques of adaptation and correspondence. Finally, to prove the relevance of the extracted results, we conducted a set of experiments using different test metrics as well as a comparative study.
We consider open domain event extraction, the task of extracting unconstraint types of events from news clusters. A novel latent variable neural model is constructed, which is scalable to very large corpus. A dataset is collected and manually annotated, with task-specific evaluation metrics being designed. Results show that the proposed unsupervised model gives better performance compared to the state-of-the-art method for event schema induction.
This work introduces a general method for automatically finding the locations where political events in text occurred. Using a novel set of 8,000 labeled sentences, I create a method to link automatically extracted events and locations in text. The model achieves human level performance on the annotation task and outperforms previous event geolocation systems. It can be applied to most event extraction systems across geographic contexts. I formalize the event--location linking task, describe the neural network model, describe the potential uses of such a system in political science, and demonstrate a workflow to answer an open question on the role of conventional military offensives in causing civilian casualties in the Syrian civil war.
Motivation: Biomedical event detection is fundamental for information extraction in molecular biology and biomedical research. The detected events form the central basis for comprehensive biomedical knowledge fusion, facilitating the digestion of massive information influx from literature. Limited by the feature context, the existing event detection models are mostly applicable for a single task. A general and scalable computational model is desiderated for biomedical knowledge management. Results: We consider and propose a bottom-up detection framework to identify the events from recognized arguments. To capture the relations between the arguments, we trained a bi-directional Long Short-Term Memory (LSTM) network to model their context embedding. Leveraging the compositional attributes, we further derived the candidate samples for training event classifiers. We built our models on the datasets from BioNLP Shared Task for evaluations. Our method achieved the average F-scores of 0.81 and 0.92 on BioNLPST-BGI and BioNLPST-BB datasets respectively. Comparing with 7 state-of-the-art methods, our method nearly doubled the existing F-score performance (0.92 vs 0.56) on the BioNLPST-BB dataset. Case studies were conducted to reveal the underlying reasons. Availability: https://github.com/cskyan/evntextrc
Most existing event extraction (EE) methods merely extract event arguments within the sentence scope. However, such sentence-level EE methods struggle to handle soaring amounts of documents from emerging applications, such as finance, legislation, health, etc., where event arguments always scatter across different sentences, and even multiple such event mentions frequently co-exist in the same document. To address these challenges, we propose a novel end-to-end model, Doc2EDAG, which can generate an entity-based directed acyclic graph to fulfill the document-level EE (DEE) effectively. Moreover, we reformalize a DEE task with the no-trigger-words design to ease the document-level event labeling. To demonstrate the effectiveness of Doc2EDAG, we build a large-scale real-world dataset consisting of Chinese financial announcements with the challenges mentioned above. Extensive experiments with comprehensive analyses illustrate the superiority of Doc2EDAG over state-of-the-art methods. Data and codes can be found at https://github.com/dolphin-zs/Doc2EDAG.